Scutellaria laeteviolacea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075890.1 · 3–76 bp · −
psbA · PQ075890.1 · 369–1,427 bp · −
trnK-UUU · PQ075890.1 · 1,669–4,249 bp · −
matK · PQ075890.1 · 1,956–3,491 bp · −
rps16 · PQ075890.1 · 5,122–6,285 bp · −
trnQ-UUG · PQ075890.1 · 7,296–7,367 bp · −
trnS-GCU · PQ075890.1 · 8,497–8,584 bp · −
atpA · PQ075890.1 · 10,244–11,767 bp · −
atpF · PQ075890.1 · 11,850–13,077 bp · −
atpH · PQ075890.1 · 13,435–13,680 bp · −
atpI · PQ075890.1 · 14,669–15,412 bp · −
rps2 · PQ075890.1 · 15,760–16,470 bp · −
rpoC2 · PQ075890.1 · 16,687–20,892 bp · −
rpoC1 · PQ075890.1 · 21,047–23,876 bp · −
rpoB · PQ075890.1 · 23,903–27,115 bp · −
psbM · PQ075890.1 · 30,153–30,257 bp · −
trnD-GUC · PQ075890.1 · 30,784–30,857 bp · −
trnY-GUA · PQ075890.1 · 30,971–31,054 bp · −
trnE-UUC · PQ075890.1 · 31,114–31,186 bp · −
trnS-UGA · PQ075890.1 · 35,804–35,895 bp · −
trnfM-CAU · PQ075890.1 · 36,899–36,972 bp · −
rps14 · PQ075890.1 · 37,122–37,424 bp · −
psaB · PQ075890.1 · 37,552–39,756 bp · −
psaA · PQ075890.1 · 39,782–42,034 bp · −
ycf3 · PQ075890.1 · 42,705–44,627 bp · −
rps4 · PQ075890.1 · 45,867–46,472 bp · −
trnT-UGU · PQ075890.1 · 46,814–46,886 bp · −
ndhJ · PQ075890.1 · 49,154–49,630 bp · −
ndhK · PQ075890.1 · 49,738–50,415 bp · −
ndhC · PQ075890.1 · 50,468–50,830 bp · −
trnV-UAC · PQ075890.1 · 51,677–52,329 bp · −
atpE · PQ075890.1 · 52,798–53,199 bp · −
atpB · PQ075890.1 · 53,196–54,683 bp · −
psbJ · PQ075890.1 · 64,283–64,405 bp · −
psbL · PQ075890.1 · 64,539–64,655 bp · −
psbF · PQ075890.1 · 64,679–64,798 bp · −
psbE · PQ075890.1 · 64,813–65,064 bp · −
trnW-CCA · PQ075890.1 · 66,468–66,541 bp · −
trnP-UGG · PQ075890.1 · 66,711–66,784 bp · −
rpl20 · PQ075890.1 · 68,582–68,968 bp · −
rps12 · PQ075890.1 · 69,769–69,882 bp · −
rps12 · PQ075890.1 · 97,072–97,862 bp · −
clpP · PQ075890.1 · 70,025–71,948 bp · −
psbN · PQ075890.1 · 74,308–74,439 bp · −
rpoA · PQ075890.1 · 77,800–78,813 bp · −
rps11 · PQ075890.1 · 78,885–79,301 bp · −
rpl36 · PQ075890.1 · 79,403–79,516 bp · −
infA · PQ075890.1 · 79,612–79,845 bp · −
rps8 · PQ075890.1 · 79,965–80,375 bp · −
rpl14 · PQ075890.1 · 80,546–80,914 bp · −
rpl16 · PQ075890.1 · 81,041–82,267 bp · −
rps3 · PQ075890.1 · 82,422–83,084 bp · −
rpl22 · PQ075890.1 · 83,086–83,541 bp · −
rps19 · PQ075890.1 · 83,601–83,879 bp · −
rpl2 · PQ075890.1 · 83,934–85,416 bp · −
rpl23 · PQ075890.1 · 85,435–85,716 bp · −
trnI-CAU · PQ075890.1 · 85,876–85,949 bp · −
trnL-CAA · PQ075890.1 · 93,442–93,522 bp · −
ndhB · PQ075890.1 · 94,065–96,276 bp · −
rps7 · PQ075890.1 · 96,551–97,018 bp · −
trnN-GUU · PQ075890.1 · 107,895–107,966 bp · −
ndhF · PQ075890.1 · 109,043–111,283 bp · −
ndhD · PQ075890.1 · 113,798–115,300 bp · −
psaC · PQ075890.1 · 115,421–115,666 bp · −
ndhE · PQ075890.1 · 115,923–116,228 bp · −
ndhG · PQ075890.1 · 116,449–116,979 bp · −
ndhI · PQ075890.1 · 117,344–117,844 bp · −
ndhA · PQ075890.1 · 117,925–120,015 bp · −
ndhH · PQ075890.1 · 120,017–121,228 bp · −
rps15 · PQ075890.1 · 121,301–121,633 bp · −
ycf1 · PQ075890.1 · 121,840–127,485 bp · −
trnR-ACG · PQ075890.1 · 128,322–128,395 bp · −
rrn5 · PQ075890.1 · 128,630–128,750 bp · −
rrn4.5 · PQ075890.1 · 128,998–129,100 bp · −
rrn23 · PQ075890.1 · 129,199–132,011 bp · −
trnA-UGC · PQ075890.1 · 132,181–133,065 bp · −
trnI-GAU · PQ075890.1 · 133,130–134,150 bp · −
ycf68 · PQ075890.1 · 133,756–133,995 bp · −
rrn16 · PQ075890.1 · 134,449–135,939 bp · −
trnV-GAC · PQ075890.1 · 136,167–136,238 bp · −
ycf15 · PQ075890.1 · 142,484–142,732 bp · −
ycf2 · PQ075890.1 · 142,823–149,632 bp · −
psbK · PQ075890.1 · 7,692–7,877 bp · +
psbI · PQ075890.1 · 8,269–8,379 bp · +
trnG-UCC · PQ075890.1 · 9,145–9,905 bp · +
trnR-UCU · PQ075890.1 · 10,076–10,147 bp · +
trnC-GCA · PQ075890.1 · 28,296–28,366 bp · +
petN · PQ075890.1 · 29,078–29,167 bp · +
trnT-GGU · PQ075890.1 · 31,762–31,833 bp · +
psbD · PQ075890.1 · 33,136–34,197 bp · +
psbC · PQ075890.1 · 34,145–35,566 bp · +
psbZ · PQ075890.1 · 36,215–36,403 bp · +
trnG-GCC · PQ075890.1 · 36,675–36,745 bp · +
trnS-GGA · PQ075890.1 · 45,503–45,589 bp · +
trnL-UAA · PQ075890.1 · 47,572–48,132 bp · +
trnF-GAA · PQ075890.1 · 48,433–48,505 bp · +
trnM-CAU · PQ075890.1 · 52,510–52,582 bp · +
rbcL · PQ075890.1 · 55,439–56,899 bp · +
accD · PQ075890.1 · 57,622–59,088 bp · +
psaI · PQ075890.1 · 59,646–59,756 bp · +
ycf4 · PQ075890.1 · 60,190–60,744 bp · +
cemA · PQ075890.1 · 61,482–62,081 bp · +
petA · PQ075890.1 · 62,288–63,250 bp · +
petL · PQ075890.1 · 65,965–66,060 bp · +
petG · PQ075890.1 · 66,236–66,349 bp · +
psaJ · PQ075890.1 · 67,057–67,191 bp · +
rpl33 · PQ075890.1 · 67,665–67,865 bp · +
rps18 · PQ075890.1 · 68,040–68,345 bp · +
rps12 · PQ075890.1 · 137,808–138,598 bp · +
psbB · PQ075890.1 · 72,415–73,941 bp · +
psbT · PQ075890.1 · 74,133–74,234 bp · +
psbH · PQ075890.1 · 74,543–74,764 bp · +
petB · PQ075890.1 · 74,889–76,257 bp · +
petD · PQ075890.1 · 76,446–77,637 bp · +
ycf2 · PQ075890.1 · 86,038–92,847 bp · +
ycf15 · PQ075890.1 · 92,938–93,186 bp · +
trnV-GAC · PQ075890.1 · 99,432–99,503 bp · +
rrn16 · PQ075890.1 · 99,731–101,221 bp · +
trnI-GAU · PQ075890.1 · 101,520–102,540 bp · +
trnA-UGC · PQ075890.1 · 102,605–103,489 bp · +
rrn23 · PQ075890.1 · 103,659–106,471 bp · +
rrn4.5 · PQ075890.1 · 106,570–106,672 bp · +
rrn5 · PQ075890.1 · 106,920–107,040 bp · +
trnR-ACG · PQ075890.1 · 107,275–107,348 bp · +
rpl32 · PQ075890.1 · 111,804–111,980 bp · +
trnL-UAG · PQ075890.1 · 112,414–112,493 bp · +
ccsA · PQ075890.1 · 112,591–113,565 bp · +
trnN-GUU · PQ075890.1 · 127,704–127,775 bp · +
rps7 · PQ075890.1 · 138,652–139,119 bp · +
ndhB · PQ075890.1 · 139,394–141,605 bp · +
trnL-CAA · PQ075890.1 · 142,148–142,228 bp · +
trnI-CAU · PQ075890.1 · 149,721–149,794 bp · +
rpl23 · PQ075890.1 · 149,954–150,235 bp · +
rpl2 · PQ075890.1 · 150,254–151,736 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria laeteviolacea
ANNOTATED PLASTOME
PQ075890.1
151,831 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37958 75916 113873 151831 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1669 4249 2581 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5122 6285 1164 Locate
trnQ-UUG gene − 7296 7367 72 Locate
psbK gene + 7692 7877 186 Locate
psbI gene + 8269 8379 111 Locate
trnS-GCU gene − 8497 8584 88 Locate
trnG-UCC gene + 9145 9905 761 Locate
trnR-UCU gene + 10076 10147 72 Locate
atpA gene − 10244 11767 1524 Locate
atpF gene − 11850 13077 1228 Locate
atpH gene − 13435 13680 246 Locate
atpI gene − 14669 15412 744 Locate
rps2 gene − 15760 16470 711 Locate
rpoC2 gene − 16687 20892 4206 Locate
rpoC1 gene − 21047 23876 2830 Locate
rpoB gene − 23903 27115 3213 Locate
trnC-GCA gene + 28296 28366 71 Locate
petN gene + 29078 29167 90 Locate
psbM gene − 30153 30257 105 Locate
trnD-GUC gene − 30784 30857 74 Locate
trnY-GUA gene − 30971 31054 84 Locate
trnE-UUC gene − 31114 31186 73 Locate
trnT-GGU gene + 31762 31833 72 Locate
psbD gene + 33136 34197 1062 Locate
psbC gene + 34145 35566 1422 Locate
trnS-UGA gene − 35804 35895 92 Locate
psbZ gene + 36215 36403 189 Locate
trnG-GCC gene + 36675 36745 71 Locate
trnfM-CAU gene − 36899 36972 74 Locate
rps14 gene − 37122 37424 303 Locate
psaB gene − 37552 39756 2205 Locate
psaA gene − 39782 42034 2253 Locate
ycf3 gene − 42705 44627 1923 Locate
trnS-GGA gene + 45503 45589 87 Locate
rps4 gene − 45867 46472 606 Locate
trnT-UGU gene − 46814 46886 73 Locate
trnL-UAA gene + 47572 48132 561 Locate
trnF-GAA gene + 48433 48505 73 Locate
ndhJ gene − 49154 49630 477 Locate
ndhK gene − 49738 50415 678 Locate
ndhC gene − 50468 50830 363 Locate
trnV-UAC gene − 51677 52329 653 Locate
trnM-CAU gene + 52510 52582 73 Locate
atpE gene − 52798 53199 402 Locate
atpB gene − 53196 54683 1488 Locate
rbcL gene + 55439 56899 1461 Locate
accD gene + 57622 59088 1467 Locate
psaI gene + 59646 59756 111 Locate
ycf4 gene + 60190 60744 555 Locate
cemA gene + 61482 62081 600 Locate
petA gene + 62288 63250 963 Locate
psbJ gene − 64283 64405 123 Locate
psbL gene − 64539 64655 117 Locate
psbF gene − 64679 64798 120 Locate
psbE gene − 64813 65064 252 Locate
petL gene + 65965 66060 96 Locate
petG gene + 66236 66349 114 Locate
trnW-CCA gene − 66468 66541 74 Locate
trnP-UGG gene − 66711 66784 74 Locate
psaJ gene + 67057 67191 135 Locate
rpl33 gene + 67665 67865 201 Locate
rps18 gene + 68040 68345 306 Locate
rpl20 gene − 68582 68968 387 Locate
rps12 gene − 69769 69882 114 Locate
clpP gene − 70025 71948 1924 Locate
psbB gene + 72415 73941 1527 Locate
psbT gene + 74133 74234 102 Locate
psbN gene − 74308 74439 132 Locate
psbH gene + 74543 74764 222 Locate
petB gene + 74889 76257 1369 Locate
petD gene + 76446 77637 1192 Locate
rpoA gene − 77800 78813 1014 Locate
rps11 gene − 78885 79301 417 Locate
rpl36 gene − 79403 79516 114 Locate
infA gene − 79612 79845 234 Locate
rps8 gene − 79965 80375 411 Locate
rpl14 gene − 80546 80914 369 Locate
rpl16 gene − 81041 82267 1227 Locate
rps3 gene − 82422 83084 663 Locate
rpl22 gene − 83086 83541 456 Locate
rps19 gene − 83601 83879 279 Locate
rpl2 gene − 83934 85416 1483 Locate
rpl23 gene − 85435 85716 282 Locate
trnI-CAU gene − 85876 85949 74 Locate
ycf2 gene + 86038 92847 6810 Locate
ycf15 gene + 92938 93186 249 Locate
trnL-CAA gene − 93442 93522 81 Locate
ndhB gene − 94065 96276 2212 Locate
rps7 gene − 96551 97018 468 Locate
rps12 gene − 97072 97862 791 Locate
trnV-GAC gene + 99432 99503 72 Locate
rrn16 gene + 99731 101221 1491 Locate
trnI-GAU gene + 101520 102540 1021 Locate
trnA-UGC gene + 102605 103489 885 Locate
rrn23 gene + 103659 106471 2813 Locate
rrn4.5 gene + 106570 106672 103 Locate
rrn5 gene + 106920 107040 121 Locate
trnR-ACG gene + 107275 107348 74 Locate
trnN-GUU gene − 107895 107966 72 Locate
ndhF gene − 109043 111283 2241 Locate
rpl32 gene + 111804 111980 177 Locate
trnL-UAG gene + 112414 112493 80 Locate
ccsA gene + 112591 113565 975 Locate
ndhD gene − 113798 115300 1503 Locate
psaC gene − 115421 115666 246 Locate
ndhE gene − 115923 116228 306 Locate
ndhG gene − 116449 116979 531 Locate
ndhI gene − 117344 117844 501 Locate
ndhA gene − 117925 120015 2091 Locate
ndhH gene − 120017 121228 1212 Locate
rps15 gene − 121301 121633 333 Locate
ycf1 gene − 121840 127485 5646 Locate
trnN-GUU gene + 127704 127775 72 Locate
trnR-ACG gene − 128322 128395 74 Locate
rrn5 gene − 128630 128750 121 Locate
rrn4.5 gene − 128998 129100 103 Locate
rrn23 gene − 129199 132011 2813 Locate
trnA-UGC gene − 132181 133065 885 Locate
trnI-GAU gene − 133130 134150 1021 Locate
ycf68 gene − 133756 133995 240 Locate
rrn16 gene − 134449 135939 1491 Locate
trnV-GAC gene − 136167 136238 72 Locate
rps12 gene + 137808 138598 791 Locate
rps7 gene + 138652 139119 468 Locate
ndhB gene + 139394 141605 2212 Locate
trnL-CAA gene + 142148 142228 81 Locate
ycf15 gene − 142484 142732 249 Locate
ycf2 gene − 142823 149632 6810 Locate
trnI-CAU gene + 149721 149794 74 Locate
rpl23 gene + 149954 150235 282 Locate
rpl2 gene + 150254 151736 1483 Locate
Status Available
Accession PQ075890.1
Length 151,831 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources