Scutellaria lanipes chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058244.1 · 4–77 bp · −
psbA · PQ058244.1 · 374–1,432 bp · −
trnK-UUU · PQ058244.1 · 1,674–4,255 bp · −
matK · PQ058244.1 · 1,964–3,490 bp · −
rps16 · PQ058244.1 · 5,157–6,317 bp · −
trnQ-UUG · PQ058244.1 · 7,063–7,134 bp · −
trnS-GCU · PQ058244.1 · 8,263–8,350 bp · −
atpA · PQ058244.1 · 10,152–11,675 bp · −
atpF · PQ058244.1 · 11,757–12,986 bp · −
atpH · PQ058244.1 · 13,347–13,592 bp · −
atpI · PQ058244.1 · 14,580–15,323 bp · −
rps2 · PQ058244.1 · 15,669–16,379 bp · −
rpoC2 · PQ058244.1 · 16,594–20,799 bp · −
rpoC1 · PQ058244.1 · 20,954–23,790 bp · −
rpoB · PQ058244.1 · 23,817–27,029 bp · −
psbM · PQ058244.1 · 30,132–30,236 bp · −
trnD-GUC · PQ058244.1 · 30,762–30,835 bp · −
trnY-GUA · PQ058244.1 · 30,949–31,032 bp · −
trnE-UUC · PQ058244.1 · 31,092–31,164 bp · −
trnS-UGA · PQ058244.1 · 35,783–35,874 bp · −
trnfM-CAU · PQ058244.1 · 36,873–36,946 bp · −
rps14 · PQ058244.1 · 37,096–37,398 bp · −
psaB · PQ058244.1 · 37,527–39,731 bp · −
psaA · PQ058244.1 · 39,757–42,009 bp · −
ycf3 · PQ058244.1 · 42,702–44,623 bp · −
rps4 · PQ058244.1 · 45,885–46,490 bp · −
trnT-UGU · PQ058244.1 · 46,837–46,909 bp · −
ndhJ · PQ058244.1 · 49,172–49,648 bp · −
ndhK · PQ058244.1 · 49,757–50,434 bp · −
ndhC · PQ058244.1 · 50,488–50,850 bp · −
trnV-UAC · PQ058244.1 · 51,836–52,488 bp · −
atpE · PQ058244.1 · 52,943–53,344 bp · −
atpB · PQ058244.1 · 53,341–54,837 bp · −
psbJ · PQ058244.1 · 64,571–64,693 bp · −
psbL · PQ058244.1 · 64,827–64,943 bp · −
psbF · PQ058244.1 · 64,967–65,086 bp · −
psbE · PQ058244.1 · 65,101–65,352 bp · −
trnW-CCA · PQ058244.1 · 66,732–66,805 bp · −
trnP-UGG · PQ058244.1 · 66,976–67,049 bp · −
rpl20 · PQ058244.1 · 68,846–69,232 bp · −
rps12 · PQ058244.1 · 70,015–70,140 bp · −
rps12 · PQ058244.1 · 97,287–98,077 bp · −
clpP · PQ058244.1 · 70,282–72,210 bp · −
psbN · PQ058244.1 · 74,548–74,679 bp · −
rpoA · PQ058244.1 · 78,242–79,042 bp · −
rps11 · PQ058244.1 · 79,114–79,530 bp · −
rpl36 · PQ058244.1 · 79,632–79,745 bp · −
infA · PQ058244.1 · 79,840–80,073 bp · −
rps8 · PQ058244.1 · 80,197–80,607 bp · −
rpl14 · PQ058244.1 · 80,760–81,128 bp · −
rpl16 · PQ058244.1 · 81,255–82,487 bp · −
rps3 · PQ058244.1 · 82,643–83,305 bp · −
rpl22 · PQ058244.1 · 83,307–83,762 bp · −
rps19 · PQ058244.1 · 83,822–84,100 bp · −
rpl2 · PQ058244.1 · 84,155–85,636 bp · −
rpl23 · PQ058244.1 · 85,655–85,936 bp · −
trnI-CAU · PQ058244.1 · 86,096–86,169 bp · −
trnL-CAA · PQ058244.1 · 93,657–93,737 bp · −
ndhB · PQ058244.1 · 94,280–96,491 bp · −
rps7 · PQ058244.1 · 96,766–97,233 bp · −
trnN-GUU · PQ058244.1 · 108,117–108,188 bp · −
ndhF · PQ058244.1 · 109,245–111,506 bp · −
ndhD · PQ058244.1 · 113,886–115,415 bp · −
psaC · PQ058244.1 · 115,516–115,761 bp · −
ndhE · PQ058244.1 · 116,017–116,322 bp · −
ndhG · PQ058244.1 · 116,539–117,069 bp · −
ndhI · PQ058244.1 · 117,435–117,935 bp · −
ndhA · PQ058244.1 · 118,021–120,142 bp · −
ndhH · PQ058244.1 · 120,144–121,325 bp · −
rps15 · PQ058244.1 · 121,422–121,694 bp · −
ycf1 · PQ058244.1 · 121,892–127,528 bp · −
trnR-ACG · PQ058244.1 · 128,367–128,440 bp · −
rrn5 · PQ058244.1 · 128,675–128,795 bp · −
rrn4.5 · PQ058244.1 · 129,043–129,145 bp · −
rrn23 · PQ058244.1 · 129,244–132,055 bp · −
trnA-UGC · PQ058244.1 · 132,225–133,114 bp · −
trnI-GAU · PQ058244.1 · 133,179–134,199 bp · −
ycf68 · PQ058244.1 · 133,751–134,044 bp · −
rrn16 · PQ058244.1 · 134,498–135,988 bp · −
trnV-GAC · PQ058244.1 · 136,215–136,286 bp · −
ycf15 · PQ058244.1 · 142,538–142,735 bp · −
ycf2 · PQ058244.1 · 142,877–149,677 bp · −
psbK · PQ058244.1 · 7,459–7,644 bp · +
psbI · PQ058244.1 · 8,034–8,144 bp · +
trnG-UCC · PQ058244.1 · 9,053–9,809 bp · +
trnR-UCU · PQ058244.1 · 9,984–10,055 bp · +
trnC-GCA · PQ058244.1 · 28,190–28,260 bp · +
petN · PQ058244.1 · 28,976–29,065 bp · +
trnT-GGU · PQ058244.1 · 31,739–31,810 bp · +
psbD · PQ058244.1 · 33,117–34,178 bp · +
psbC · PQ058244.1 · 34,126–35,547 bp · +
psbZ · PQ058244.1 · 36,190–36,378 bp · +
trnG-GCC · PQ058244.1 · 36,655–36,725 bp · +
trnS-GGA · PQ058244.1 · 45,523–45,609 bp · +
trnL-UAA · PQ058244.1 · 47,591–48,150 bp · +
trnF-GAA · PQ058244.1 · 48,451–48,523 bp · +
trnM-CAU · PQ058244.1 · 52,677–52,749 bp · +
rbcL · PQ058244.1 · 55,588–57,051 bp · +
accD · PQ058244.1 · 57,765–59,243 bp · +
psaI · PQ058244.1 · 59,949–60,059 bp · +
ycf4 · PQ058244.1 · 60,493–61,047 bp · +
cemA · PQ058244.1 · 61,795–62,394 bp · +
petA · PQ058244.1 · 62,601–63,563 bp · +
petL · PQ058244.1 · 66,229–66,324 bp · +
petG · PQ058244.1 · 66,500–66,613 bp · +
psaJ · PQ058244.1 · 67,321–67,455 bp · +
rpl33 · PQ058244.1 · 67,931–68,131 bp · +
rps18 · PQ058244.1 · 68,306–68,611 bp · +
rps12 · PQ058244.1 · 137,858–138,648 bp · +
psbB · PQ058244.1 · 72,662–74,188 bp · +
psbT · PQ058244.1 · 74,380–74,487 bp · +
psbH · PQ058244.1 · 74,783–75,004 bp · +
petB · PQ058244.1 · 75,129–76,498 bp · +
petD · PQ058244.1 · 76,681–77,887 bp · +
ycf2 · PQ058244.1 · 86,258–93,058 bp · +
ycf15 · PQ058244.1 · 93,200–93,397 bp · +
trnV-GAC · PQ058244.1 · 99,649–99,720 bp · +
rrn16 · PQ058244.1 · 99,947–101,437 bp · +
trnI-GAU · PQ058244.1 · 101,736–102,756 bp · +
trnA-UGC · PQ058244.1 · 102,821–103,710 bp · +
rrn23 · PQ058244.1 · 103,880–106,691 bp · +
rrn4.5 · PQ058244.1 · 106,790–106,892 bp · +
rrn5 · PQ058244.1 · 107,140–107,260 bp · +
trnR-ACG · PQ058244.1 · 107,495–107,568 bp · +
rpl32 · PQ058244.1 · 111,834–112,010 bp · +
trnL-UAG · PQ058244.1 · 112,457–112,536 bp · +
ccsA · PQ058244.1 · 112,638–113,612 bp · +
trnN-GUU · PQ058244.1 · 127,747–127,818 bp · +
rps7 · PQ058244.1 · 138,702–139,169 bp · +
ndhB · PQ058244.1 · 139,444–141,655 bp · +
trnL-CAA · PQ058244.1 · 142,198–142,278 bp · +
trnI-CAU · PQ058244.1 · 149,766–149,839 bp · +
rpl23 · PQ058244.1 · 149,999–150,280 bp · +
rpl2 · PQ058244.1 · 150,299–151,780 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria lanipes
ANNOTATED PLASTOME
PQ058244.1
151,880 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37970 75940 113910 151880 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6317 1161 Locate
trnQ-UUG gene − 7063 7134 72 Locate
psbK gene + 7459 7644 186 Locate
psbI gene + 8034 8144 111 Locate
trnS-GCU gene − 8263 8350 88 Locate
trnG-UCC gene + 9053 9809 757 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11757 12986 1230 Locate
atpH gene − 13347 13592 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15669 16379 711 Locate
rpoC2 gene − 16594 20799 4206 Locate
rpoC1 gene − 20954 23790 2837 Locate
rpoB gene − 23817 27029 3213 Locate
trnC-GCA gene + 28190 28260 71 Locate
petN gene + 28976 29065 90 Locate
psbM gene − 30132 30236 105 Locate
trnD-GUC gene − 30762 30835 74 Locate
trnY-GUA gene − 30949 31032 84 Locate
trnE-UUC gene − 31092 31164 73 Locate
trnT-GGU gene + 31739 31810 72 Locate
psbD gene + 33117 34178 1062 Locate
psbC gene + 34126 35547 1422 Locate
trnS-UGA gene − 35783 35874 92 Locate
psbZ gene + 36190 36378 189 Locate
trnG-GCC gene + 36655 36725 71 Locate
trnfM-CAU gene − 36873 36946 74 Locate
rps14 gene − 37096 37398 303 Locate
psaB gene − 37527 39731 2205 Locate
psaA gene − 39757 42009 2253 Locate
ycf3 gene − 42702 44623 1922 Locate
trnS-GGA gene + 45523 45609 87 Locate
rps4 gene − 45885 46490 606 Locate
trnT-UGU gene − 46837 46909 73 Locate
trnL-UAA gene + 47591 48150 560 Locate
trnF-GAA gene + 48451 48523 73 Locate
ndhJ gene − 49172 49648 477 Locate
ndhK gene − 49757 50434 678 Locate
ndhC gene − 50488 50850 363 Locate
trnV-UAC gene − 51836 52488 653 Locate
trnM-CAU gene + 52677 52749 73 Locate
atpE gene − 52943 53344 402 Locate
atpB gene − 53341 54837 1497 Locate
rbcL gene + 55588 57051 1464 Locate
accD gene + 57765 59243 1479 Locate
psaI gene + 59949 60059 111 Locate
ycf4 gene + 60493 61047 555 Locate
cemA gene + 61795 62394 600 Locate
petA gene + 62601 63563 963 Locate
psbJ gene − 64571 64693 123 Locate
psbL gene − 64827 64943 117 Locate
psbF gene − 64967 65086 120 Locate
psbE gene − 65101 65352 252 Locate
petL gene + 66229 66324 96 Locate
petG gene + 66500 66613 114 Locate
trnW-CCA gene − 66732 66805 74 Locate
trnP-UGG gene − 66976 67049 74 Locate
psaJ gene + 67321 67455 135 Locate
rpl33 gene + 67931 68131 201 Locate
rps18 gene + 68306 68611 306 Locate
rpl20 gene − 68846 69232 387 Locate
rps12 gene − 70015 70140 126 Locate
clpP gene − 70282 72210 1929 Locate
psbB gene + 72662 74188 1527 Locate
psbT gene + 74380 74487 108 Locate
psbN gene − 74548 74679 132 Locate
psbH gene + 74783 75004 222 Locate
petB gene + 75129 76498 1370 Locate
petD gene + 76681 77887 1207 Locate
rpoA gene − 78242 79042 801 Locate
rps11 gene − 79114 79530 417 Locate
rpl36 gene − 79632 79745 114 Locate
infA gene − 79840 80073 234 Locate
rps8 gene − 80197 80607 411 Locate
rpl14 gene − 80760 81128 369 Locate
rpl16 gene − 81255 82487 1233 Locate
rps3 gene − 82643 83305 663 Locate
rpl22 gene − 83307 83762 456 Locate
rps19 gene − 83822 84100 279 Locate
rpl2 gene − 84155 85636 1482 Locate
rpl23 gene − 85655 85936 282 Locate
trnI-CAU gene − 86096 86169 74 Locate
ycf2 gene + 86258 93058 6801 Locate
ycf15 gene + 93200 93397 198 Locate
trnL-CAA gene − 93657 93737 81 Locate
ndhB gene − 94280 96491 2212 Locate
rps7 gene − 96766 97233 468 Locate
rps12 gene − 97287 98077 791 Locate
trnV-GAC gene + 99649 99720 72 Locate
rrn16 gene + 99947 101437 1491 Locate
trnI-GAU gene + 101736 102756 1021 Locate
trnA-UGC gene + 102821 103710 890 Locate
rrn23 gene + 103880 106691 2812 Locate
rrn4.5 gene + 106790 106892 103 Locate
rrn5 gene + 107140 107260 121 Locate
trnR-ACG gene + 107495 107568 74 Locate
trnN-GUU gene − 108117 108188 72 Locate
ndhF gene − 109245 111506 2262 Locate
rpl32 gene + 111834 112010 177 Locate
trnL-UAG gene + 112457 112536 80 Locate
ccsA gene + 112638 113612 975 Locate
ndhD gene − 113886 115415 1530 Locate
psaC gene − 115516 115761 246 Locate
ndhE gene − 116017 116322 306 Locate
ndhG gene − 116539 117069 531 Locate
ndhI gene − 117435 117935 501 Locate
ndhA gene − 118021 120142 2122 Locate
ndhH gene − 120144 121325 1182 Locate
rps15 gene − 121422 121694 273 Locate
ycf1 gene − 121892 127528 5637 Locate
trnN-GUU gene + 127747 127818 72 Locate
trnR-ACG gene − 128367 128440 74 Locate
rrn5 gene − 128675 128795 121 Locate
rrn4.5 gene − 129043 129145 103 Locate
rrn23 gene − 129244 132055 2812 Locate
trnA-UGC gene − 132225 133114 890 Locate
trnI-GAU gene − 133179 134199 1021 Locate
ycf68 gene − 133751 134044 294 Locate
rrn16 gene − 134498 135988 1491 Locate
trnV-GAC gene − 136215 136286 72 Locate
rps12 gene + 137858 138648 791 Locate
rps7 gene + 138702 139169 468 Locate
ndhB gene + 139444 141655 2212 Locate
trnL-CAA gene + 142198 142278 81 Locate
ycf15 gene − 142538 142735 198 Locate
ycf2 gene − 142877 149677 6801 Locate
trnI-CAU gene + 149766 149839 74 Locate
rpl23 gene + 149999 150280 282 Locate
rpl2 gene + 150299 151780 1482 Locate
Status Available
Accession PQ058244.1
Length 151,880 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources