Scutellaria lateriflora chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058260.1 · 3–76 bp · −
psbA · PQ058260.1 · 379–1,437 bp · −
trnK-UUU · PQ058260.1 · 1,670–4,257 bp · −
matK · PQ058260.1 · 1,965–3,500 bp · −
rps16 · PQ058260.1 · 5,163–6,331 bp · −
trnQ-UUG · PQ058260.1 · 7,374–7,445 bp · −
trnS-GCU · PQ058260.1 · 8,581–8,668 bp · −
atpA · PQ058260.1 · 10,467–11,990 bp · −
atpF · PQ058260.1 · 12,064–13,291 bp · −
atpH · PQ058260.1 · 13,660–13,905 bp · −
atpI · PQ058260.1 · 14,902–15,645 bp · −
rps2 · PQ058260.1 · 15,987–16,697 bp · −
rpoC2 · PQ058260.1 · 16,914–21,119 bp · −
rpoC1 · PQ058260.1 · 21,274–24,109 bp · −
rpoB · PQ058260.1 · 24,136–27,348 bp · −
psbM · PQ058260.1 · 30,397–30,501 bp · −
trnD-GUC · PQ058260.1 · 31,027–31,100 bp · −
trnY-GUA · PQ058260.1 · 31,214–31,297 bp · −
trnE-UUC · PQ058260.1 · 31,357–31,429 bp · −
trnS-UGA · PQ058260.1 · 36,058–36,149 bp · −
trnfM-CAU · PQ058260.1 · 37,135–37,208 bp · −
rps14 · PQ058260.1 · 37,358–37,660 bp · −
psaB · PQ058260.1 · 37,788–39,992 bp · −
psaA · PQ058260.1 · 40,018–42,270 bp · −
ycf3 · PQ058260.1 · 42,946–44,868 bp · −
rps4 · PQ058260.1 · 46,125–46,730 bp · −
trnT-UGU · PQ058260.1 · 47,071–47,143 bp · −
ndhJ · PQ058260.1 · 49,435–49,911 bp · −
ndhK · PQ058260.1 · 50,019–50,696 bp · −
ndhC · PQ058260.1 · 50,749–51,111 bp · −
trnV-UAC · PQ058260.1 · 52,107–52,759 bp · −
atpE · PQ058260.1 · 53,222–53,623 bp · −
atpB · PQ058260.1 · 53,620–55,107 bp · −
psbJ · PQ058260.1 · 64,831–64,953 bp · −
psbL · PQ058260.1 · 65,087–65,203 bp · −
psbF · PQ058260.1 · 65,227–65,346 bp · −
psbE · PQ058260.1 · 65,361–65,612 bp · −
trnW-CCA · PQ058260.1 · 67,022–67,095 bp · −
trnP-UGG · PQ058260.1 · 67,265–67,338 bp · −
rpl20 · PQ058260.1 · 69,133–69,519 bp · −
rps12 · PQ058260.1 · 70,308–70,433 bp · −
rps12 · PQ058260.1 · 97,641–98,431 bp · −
clpP · PQ058260.1 · 70,557–72,492 bp · −
psbN · PQ058260.1 · 74,855–74,986 bp · −
rpoA · PQ058260.1 · 78,356–79,369 bp · −
rps11 · PQ058260.1 · 79,441–79,857 bp · −
rpl36 · PQ058260.1 · 79,959–80,072 bp · −
infA · PQ058260.1 · 80,168–80,401 bp · −
rps8 · PQ058260.1 · 80,522–80,932 bp · −
rpl14 · PQ058260.1 · 81,098–81,466 bp · −
rpl16 · PQ058260.1 · 81,593–82,836 bp · −
rps3 · PQ058260.1 · 82,991–83,653 bp · −
rpl22 · PQ058260.1 · 83,655–84,110 bp · −
rps19 · PQ058260.1 · 84,170–84,448 bp · −
rpl2 · PQ058260.1 · 84,503–85,985 bp · −
rpl23 · PQ058260.1 · 86,004–86,285 bp · −
trnI-CAU · PQ058260.1 · 86,445–86,518 bp · −
trnL-CAA · PQ058260.1 · 94,011–94,091 bp · −
ndhB · PQ058260.1 · 94,634–96,845 bp · −
rps7 · PQ058260.1 · 97,120–97,587 bp · −
trnN-GUU · PQ058260.1 · 108,467–108,538 bp · −
ndhF · PQ058260.1 · 109,615–111,855 bp · −
ndhD · PQ058260.1 · 114,371–115,894 bp · −
psaC · PQ058260.1 · 115,993–116,238 bp · −
ndhE · PQ058260.1 · 116,495–116,800 bp · −
ndhG · PQ058260.1 · 116,942–117,472 bp · −
ndhI · PQ058260.1 · 117,837–118,337 bp · −
ndhA · PQ058260.1 · 118,418–120,519 bp · −
ndhH · PQ058260.1 · 120,521–121,702 bp · −
rps15 · PQ058260.1 · 121,805–122,137 bp · −
ycf1 · PQ058260.1 · 122,344–128,004 bp · −
trnR-ACG · PQ058260.1 · 128,841–128,914 bp · −
rrn5 · PQ058260.1 · 129,149–129,269 bp · −
rrn4.5 · PQ058260.1 · 129,517–129,619 bp · −
rrn23 · PQ058260.1 · 129,718–132,530 bp · −
trnA-UGC · PQ058260.1 · 132,700–133,585 bp · −
trnI-GAU · PQ058260.1 · 133,650–134,670 bp · −
ycf68 · PQ058260.1 · 134,276–134,515 bp · −
rrn16 · PQ058260.1 · 134,969–136,459 bp · −
trnV-GAC · PQ058260.1 · 136,687–136,758 bp · −
ycf15 · PQ058260.1 · 143,006–143,254 bp · −
ycf2 · PQ058260.1 · 143,345–150,154 bp · −
psbK · PQ058260.1 · 7,770–7,955 bp · +
psbI · PQ058260.1 · 8,346–8,456 bp · +
trnG-UCC · PQ058260.1 · 9,360–10,124 bp · +
trnR-UCU · PQ058260.1 · 10,299–10,370 bp · +
trnC-GCA · PQ058260.1 · 28,512–28,582 bp · +
petN · PQ058260.1 · 29,293–29,382 bp · +
trnT-GGU · PQ058260.1 · 32,012–32,083 bp · +
psbD · PQ058260.1 · 33,392–34,453 bp · +
psbC · PQ058260.1 · 34,401–35,822 bp · +
psbZ · PQ058260.1 · 36,460–36,648 bp · +
trnG-GCC · PQ058260.1 · 36,920–36,990 bp · +
trnS-GGA · PQ058260.1 · 45,753–45,839 bp · +
trnL-UAA · PQ058260.1 · 47,827–48,407 bp · +
trnF-GAA · PQ058260.1 · 48,714–48,786 bp · +
trnM-CAU · PQ058260.1 · 52,940–53,012 bp · +
rbcL · PQ058260.1 · 55,853–57,316 bp · +
accD · PQ058260.1 · 58,027–59,493 bp · +
psaI · PQ058260.1 · 60,225–60,335 bp · +
ycf4 · PQ058260.1 · 60,769–61,323 bp · +
cemA · PQ058260.1 · 62,072–62,671 bp · +
petA · PQ058260.1 · 62,878–63,840 bp · +
petL · PQ058260.1 · 66,520–66,615 bp · +
petG · PQ058260.1 · 66,790–66,903 bp · +
psaJ · PQ058260.1 · 67,610–67,744 bp · +
rpl33 · PQ058260.1 · 68,216–68,416 bp · +
rps18 · PQ058260.1 · 68,591–68,896 bp · +
rps12 · PQ058260.1 · 138,330–139,120 bp · +
psbB · PQ058260.1 · 72,962–74,488 bp · +
psbT · PQ058260.1 · 74,680–74,781 bp · +
psbH · PQ058260.1 · 75,090–75,311 bp · +
petB · PQ058260.1 · 75,436–76,803 bp · +
petD · PQ058260.1 · 76,992–78,193 bp · +
ycf2 · PQ058260.1 · 86,607–93,416 bp · +
ycf15 · PQ058260.1 · 93,507–93,755 bp · +
trnV-GAC · PQ058260.1 · 100,003–100,074 bp · +
rrn16 · PQ058260.1 · 100,302–101,792 bp · +
trnI-GAU · PQ058260.1 · 102,091–103,111 bp · +
trnA-UGC · PQ058260.1 · 103,176–104,061 bp · +
rrn23 · PQ058260.1 · 104,231–107,043 bp · +
rrn4.5 · PQ058260.1 · 107,142–107,244 bp · +
rrn5 · PQ058260.1 · 107,492–107,612 bp · +
trnR-ACG · PQ058260.1 · 107,847–107,920 bp · +
rpl32 · PQ058260.1 · 112,366–112,542 bp · +
trnL-UAG · PQ058260.1 · 112,987–113,066 bp · +
ccsA · PQ058260.1 · 113,098–114,138 bp · +
trnN-GUU · PQ058260.1 · 128,223–128,294 bp · +
rps7 · PQ058260.1 · 139,174–139,641 bp · +
ndhB · PQ058260.1 · 139,916–142,127 bp · +
trnL-CAA · PQ058260.1 · 142,670–142,750 bp · +
trnI-CAU · PQ058260.1 · 150,243–150,316 bp · +
rpl23 · PQ058260.1 · 150,476–150,757 bp · +
rpl2 · PQ058260.1 · 150,776–152,258 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria lateriflora
ANNOTATED PLASTOME
PQ058260.1
152,353 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38088 76176 114265 152353 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1670 4257 2588 Locate
matK gene − 1965 3500 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUG gene − 7374 7445 72 Locate
psbK gene + 7770 7955 186 Locate
psbI gene + 8346 8456 111 Locate
trnS-GCU gene − 8581 8668 88 Locate
trnG-UCC gene + 9360 10124 765 Locate
trnR-UCU gene + 10299 10370 72 Locate
atpA gene − 10467 11990 1524 Locate
atpF gene − 12064 13291 1228 Locate
atpH gene − 13660 13905 246 Locate
atpI gene − 14902 15645 744 Locate
rps2 gene − 15987 16697 711 Locate
rpoC2 gene − 16914 21119 4206 Locate
rpoC1 gene − 21274 24109 2836 Locate
rpoB gene − 24136 27348 3213 Locate
trnC-GCA gene + 28512 28582 71 Locate
petN gene + 29293 29382 90 Locate
psbM gene − 30397 30501 105 Locate
trnD-GUC gene − 31027 31100 74 Locate
trnY-GUA gene − 31214 31297 84 Locate
trnE-UUC gene − 31357 31429 73 Locate
trnT-GGU gene + 32012 32083 72 Locate
psbD gene + 33392 34453 1062 Locate
psbC gene + 34401 35822 1422 Locate
trnS-UGA gene − 36058 36149 92 Locate
psbZ gene + 36460 36648 189 Locate
trnG-GCC gene + 36920 36990 71 Locate
trnfM-CAU gene − 37135 37208 74 Locate
rps14 gene − 37358 37660 303 Locate
psaB gene − 37788 39992 2205 Locate
psaA gene − 40018 42270 2253 Locate
ycf3 gene − 42946 44868 1923 Locate
trnS-GGA gene + 45753 45839 87 Locate
rps4 gene − 46125 46730 606 Locate
trnT-UGU gene − 47071 47143 73 Locate
trnL-UAA gene + 47827 48407 581 Locate
trnF-GAA gene + 48714 48786 73 Locate
ndhJ gene − 49435 49911 477 Locate
ndhK gene − 50019 50696 678 Locate
ndhC gene − 50749 51111 363 Locate
trnV-UAC gene − 52107 52759 653 Locate
trnM-CAU gene + 52940 53012 73 Locate
atpE gene − 53222 53623 402 Locate
atpB gene − 53620 55107 1488 Locate
rbcL gene + 55853 57316 1464 Locate
accD gene + 58027 59493 1467 Locate
psaI gene + 60225 60335 111 Locate
ycf4 gene + 60769 61323 555 Locate
cemA gene + 62072 62671 600 Locate
petA gene + 62878 63840 963 Locate
psbJ gene − 64831 64953 123 Locate
psbL gene − 65087 65203 117 Locate
psbF gene − 65227 65346 120 Locate
psbE gene − 65361 65612 252 Locate
petL gene + 66520 66615 96 Locate
petG gene + 66790 66903 114 Locate
trnW-CCA gene − 67022 67095 74 Locate
trnP-UGG gene − 67265 67338 74 Locate
psaJ gene + 67610 67744 135 Locate
rpl33 gene + 68216 68416 201 Locate
rps18 gene + 68591 68896 306 Locate
rpl20 gene − 69133 69519 387 Locate
rps12 gene − 70308 70433 126 Locate
clpP gene − 70557 72492 1936 Locate
psbB gene + 72962 74488 1527 Locate
psbT gene + 74680 74781 102 Locate
psbN gene − 74855 74986 132 Locate
psbH gene + 75090 75311 222 Locate
petB gene + 75436 76803 1368 Locate
petD gene + 76992 78193 1202 Locate
rpoA gene − 78356 79369 1014 Locate
rps11 gene − 79441 79857 417 Locate
rpl36 gene − 79959 80072 114 Locate
infA gene − 80168 80401 234 Locate
rps8 gene − 80522 80932 411 Locate
rpl14 gene − 81098 81466 369 Locate
rpl16 gene − 81593 82836 1244 Locate
rps3 gene − 82991 83653 663 Locate
rpl22 gene − 83655 84110 456 Locate
rps19 gene − 84170 84448 279 Locate
rpl2 gene − 84503 85985 1483 Locate
rpl23 gene − 86004 86285 282 Locate
trnI-CAU gene − 86445 86518 74 Locate
ycf2 gene + 86607 93416 6810 Locate
ycf15 gene + 93507 93755 249 Locate
trnL-CAA gene − 94011 94091 81 Locate
ndhB gene − 94634 96845 2212 Locate
rps7 gene − 97120 97587 468 Locate
rps12 gene − 97641 98431 791 Locate
trnV-GAC gene + 100003 100074 72 Locate
rrn16 gene + 100302 101792 1491 Locate
trnI-GAU gene + 102091 103111 1021 Locate
trnA-UGC gene + 103176 104061 886 Locate
rrn23 gene + 104231 107043 2813 Locate
rrn4.5 gene + 107142 107244 103 Locate
rrn5 gene + 107492 107612 121 Locate
trnR-ACG gene + 107847 107920 74 Locate
trnN-GUU gene − 108467 108538 72 Locate
ndhF gene − 109615 111855 2241 Locate
rpl32 gene + 112366 112542 177 Locate
trnL-UAG gene + 112987 113066 80 Locate
ccsA gene + 113098 114138 1041 Locate
ndhD gene − 114371 115894 1524 Locate
psaC gene − 115993 116238 246 Locate
ndhE gene − 116495 116800 306 Locate
ndhG gene − 116942 117472 531 Locate
ndhI gene − 117837 118337 501 Locate
ndhA gene − 118418 120519 2102 Locate
ndhH gene − 120521 121702 1182 Locate
rps15 gene − 121805 122137 333 Locate
ycf1 gene − 122344 128004 5661 Locate
trnN-GUU gene + 128223 128294 72 Locate
trnR-ACG gene − 128841 128914 74 Locate
rrn5 gene − 129149 129269 121 Locate
rrn4.5 gene − 129517 129619 103 Locate
rrn23 gene − 129718 132530 2813 Locate
trnA-UGC gene − 132700 133585 886 Locate
trnI-GAU gene − 133650 134670 1021 Locate
ycf68 gene − 134276 134515 240 Locate
rrn16 gene − 134969 136459 1491 Locate
trnV-GAC gene − 136687 136758 72 Locate
rps12 gene + 138330 139120 791 Locate
rps7 gene + 139174 139641 468 Locate
ndhB gene + 139916 142127 2212 Locate
trnL-CAA gene + 142670 142750 81 Locate
ycf15 gene − 143006 143254 249 Locate
ycf2 gene − 143345 150154 6810 Locate
trnI-CAU gene + 150243 150316 74 Locate
rpl23 gene + 150476 150757 282 Locate
rpl2 gene + 150776 152258 1483 Locate
Status Available
Accession PQ058260.1
Length 152,353 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources