Scutellaria laxa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059296.1 · 3–76 bp · −
psbA · PQ059296.1 · 368–1,426 bp · −
trnK-UUU · PQ059296.1 · 1,668–4,256 bp · −
matK · PQ059296.1 · 1,963–3,498 bp · −
rps16 · PQ059296.1 · 5,129–6,297 bp · −
trnQ-UUG · PQ059296.1 · 7,408–7,479 bp · −
trnS-GCU · PQ059296.1 · 8,610–8,697 bp · −
atpA · PQ059296.1 · 10,490–12,013 bp · −
atpF · PQ059296.1 · 12,096–13,323 bp · −
atpH · PQ059296.1 · 13,694–13,939 bp · −
atpI · PQ059296.1 · 14,935–15,678 bp · −
rps2 · PQ059296.1 · 16,027–16,863 bp · −
rpoC2 · PQ059296.1 · 16,954–21,159 bp · −
rpoC1 · PQ059296.1 · 21,314–24,151 bp · −
rpoB · PQ059296.1 · 24,178–27,390 bp · −
psbM · PQ059296.1 · 30,424–30,528 bp · −
trnD-GUC · PQ059296.1 · 31,055–31,128 bp · −
trnY-GUA · PQ059296.1 · 31,242–31,325 bp · −
trnE-UUC · PQ059296.1 · 31,385–31,457 bp · −
trnS-UGA · PQ059296.1 · 36,076–36,167 bp · −
trnfM-CAU · PQ059296.1 · 37,172–37,245 bp · −
rps14 · PQ059296.1 · 37,395–37,697 bp · −
psaB · PQ059296.1 · 37,825–40,029 bp · −
psaA · PQ059296.1 · 40,055–42,307 bp · −
ycf3 · PQ059296.1 · 42,982–44,904 bp · −
rps4 · PQ059296.1 · 46,162–46,767 bp · −
trnT-UGU · PQ059296.1 · 47,092–47,164 bp · −
ndhJ · PQ059296.1 · 49,438–49,914 bp · −
ndhK · PQ059296.1 · 50,022–50,699 bp · −
ndhC · PQ059296.1 · 50,752–51,114 bp · −
trnV-UAC · PQ059296.1 · 52,111–52,763 bp · −
atpE · PQ059296.1 · 53,226–53,627 bp · −
atpB · PQ059296.1 · 53,624–55,111 bp · −
psbJ · PQ059296.1 · 64,881–65,003 bp · −
psbL · PQ059296.1 · 65,137–65,253 bp · −
psbF · PQ059296.1 · 65,277–65,396 bp · −
psbE · PQ059296.1 · 65,411–65,662 bp · −
trnW-CCA · PQ059296.1 · 67,074–67,147 bp · −
trnP-UGG · PQ059296.1 · 67,317–67,390 bp · −
rpl20 · PQ059296.1 · 69,191–69,577 bp · −
rps12 · PQ059296.1 · 70,366–70,491 bp · −
rps12 · PQ059296.1 · 97,698–98,488 bp · −
clpP · PQ059296.1 · 70,628–72,561 bp · −
psbN · PQ059296.1 · 74,921–75,052 bp · −
rpoA · PQ059296.1 · 78,629–79,423 bp · −
rps11 · PQ059296.1 · 79,495–79,911 bp · −
rpl36 · PQ059296.1 · 80,013–80,126 bp · −
infA · PQ059296.1 · 80,222–80,455 bp · −
rps8 · PQ059296.1 · 80,575–80,985 bp · −
rpl14 · PQ059296.1 · 81,155–81,523 bp · −
rpl16 · PQ059296.1 · 81,650–82,893 bp · −
rps3 · PQ059296.1 · 83,048–83,710 bp · −
rpl22 · PQ059296.1 · 83,712–84,167 bp · −
rps19 · PQ059296.1 · 84,227–84,505 bp · −
rpl2 · PQ059296.1 · 84,560–86,042 bp · −
rpl23 · PQ059296.1 · 86,061–86,342 bp · −
trnI-CAU · PQ059296.1 · 86,502–86,575 bp · −
trnL-CAA · PQ059296.1 · 94,068–94,148 bp · −
ndhB · PQ059296.1 · 94,691–96,848 bp · −
rps7 · PQ059296.1 · 97,177–97,644 bp · −
trnN-GUU · PQ059296.1 · 108,528–108,599 bp · −
ndhF · PQ059296.1 · 109,676–111,916 bp · −
ndhD · PQ059296.1 · 114,429–115,931 bp · −
psaC · PQ059296.1 · 116,051–116,296 bp · −
ndhE · PQ059296.1 · 116,553–116,858 bp · −
ndhG · PQ059296.1 · 117,089–117,619 bp · −
ndhI · PQ059296.1 · 117,984–118,484 bp · −
ndhA · PQ059296.1 · 118,565–120,659 bp · −
ndhH · PQ059296.1 · 120,661–121,842 bp · −
rps15 · PQ059296.1 · 121,945–122,277 bp · −
ycf1 · PQ059296.1 · 122,489–128,128 bp · −
trnR-ACG · PQ059296.1 · 128,965–129,038 bp · −
rrn5 · PQ059296.1 · 129,273–129,393 bp · −
rrn4.5 · PQ059296.1 · 129,641–129,743 bp · −
rrn23 · PQ059296.1 · 129,842–132,654 bp · −
trnA-UGC · PQ059296.1 · 132,824–133,707 bp · −
trnI-GAU · PQ059296.1 · 133,772–134,792 bp · −
ycf68 · PQ059296.1 · 134,398–134,637 bp · −
rrn16 · PQ059296.1 · 135,091–136,581 bp · −
trnV-GAC · PQ059296.1 · 136,809–136,880 bp · −
ycf15 · PQ059296.1 · 143,134–143,382 bp · −
ycf2 · PQ059296.1 · 143,473–150,282 bp · −
psbK · PQ059296.1 · 7,804–7,989 bp · +
psbI · PQ059296.1 · 8,381–8,491 bp · +
trnG-UCC · PQ059296.1 · 9,377–10,128 bp · +
trnR-UCU · PQ059296.1 · 10,322–10,393 bp · +
trnC-GCA · PQ059296.1 · 28,560–28,630 bp · +
petN · PQ059296.1 · 29,349–29,438 bp · +
trnT-GGU · PQ059296.1 · 32,033–32,104 bp · +
psbD · PQ059296.1 · 33,410–34,471 bp · +
psbC · PQ059296.1 · 34,419–35,840 bp · +
psbZ · PQ059296.1 · 36,487–36,675 bp · +
trnG-GCC · PQ059296.1 · 36,947–37,017 bp · +
trnS-GGA · PQ059296.1 · 45,789–45,875 bp · +
trnL-UAA · PQ059296.1 · 47,849–48,410 bp · +
trnF-GAA · PQ059296.1 · 48,717–48,789 bp · +
trnM-CAU · PQ059296.1 · 52,944–53,016 bp · +
rbcL · PQ059296.1 · 55,863–57,326 bp · +
accD · PQ059296.1 · 58,061–59,527 bp · +
psaI · PQ059296.1 · 60,244–60,354 bp · +
ycf4 · PQ059296.1 · 60,788–61,342 bp · +
cemA · PQ059296.1 · 62,080–62,679 bp · +
petA · PQ059296.1 · 62,886–63,848 bp · +
petL · PQ059296.1 · 66,571–66,666 bp · +
petG · PQ059296.1 · 66,842–66,955 bp · +
psaJ · PQ059296.1 · 67,663–67,797 bp · +
rpl33 · PQ059296.1 · 68,272–68,472 bp · +
rps18 · PQ059296.1 · 68,647–68,952 bp · +
rps12 · PQ059296.1 · 138,458–139,248 bp · +
psbB · PQ059296.1 · 73,028–74,554 bp · +
psbT · PQ059296.1 · 74,746–74,847 bp · +
psbH · PQ059296.1 · 75,156–75,377 bp · +
petB · PQ059296.1 · 75,502–76,870 bp · +
petD · PQ059296.1 · 77,059–78,254 bp · +
ycf2 · PQ059296.1 · 86,664–93,473 bp · +
ycf15 · PQ059296.1 · 93,564–93,812 bp · +
trnV-GAC · PQ059296.1 · 100,066–100,137 bp · +
rrn16 · PQ059296.1 · 100,365–101,855 bp · +
trnI-GAU · PQ059296.1 · 102,154–103,174 bp · +
trnA-UGC · PQ059296.1 · 103,239–104,122 bp · +
rrn23 · PQ059296.1 · 104,292–107,104 bp · +
rrn4.5 · PQ059296.1 · 107,203–107,305 bp · +
rrn5 · PQ059296.1 · 107,553–107,673 bp · +
trnR-ACG · PQ059296.1 · 107,908–107,981 bp · +
rpl32 · PQ059296.1 · 112,437–112,613 bp · +
trnL-UAG · PQ059296.1 · 113,059–113,138 bp · +
ccsA · PQ059296.1 · 113,222–114,196 bp · +
trnN-GUU · PQ059296.1 · 128,347–128,418 bp · +
rps7 · PQ059296.1 · 139,302–139,769 bp · +
ndhB · PQ059296.1 · 140,098–142,255 bp · +
trnL-CAA · PQ059296.1 · 142,798–142,878 bp · +
trnI-CAU · PQ059296.1 · 150,371–150,444 bp · +
rpl23 · PQ059296.1 · 150,604–150,885 bp · +
rpl2 · PQ059296.1 · 150,904–152,386 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria laxa
ANNOTATED PLASTOME
PQ059296.1
152,481 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38120 76240 114361 152481 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 368 1426 1059 Locate
trnK-UUU gene − 1668 4256 2589 Locate
matK gene − 1963 3498 1536 Locate
rps16 gene − 5129 6297 1169 Locate
trnQ-UUG gene − 7408 7479 72 Locate
psbK gene + 7804 7989 186 Locate
psbI gene + 8381 8491 111 Locate
trnS-GCU gene − 8610 8697 88 Locate
trnG-UCC gene + 9377 10128 752 Locate
trnR-UCU gene + 10322 10393 72 Locate
atpA gene − 10490 12013 1524 Locate
atpF gene − 12096 13323 1228 Locate
atpH gene − 13694 13939 246 Locate
atpI gene − 14935 15678 744 Locate
rps2 gene − 16027 16863 837 Locate
rpoC2 gene − 16954 21159 4206 Locate
rpoC1 gene − 21314 24151 2838 Locate
rpoB gene − 24178 27390 3213 Locate
trnC-GCA gene + 28560 28630 71 Locate
petN gene + 29349 29438 90 Locate
psbM gene − 30424 30528 105 Locate
trnD-GUC gene − 31055 31128 74 Locate
trnY-GUA gene − 31242 31325 84 Locate
trnE-UUC gene − 31385 31457 73 Locate
trnT-GGU gene + 32033 32104 72 Locate
psbD gene + 33410 34471 1062 Locate
psbC gene + 34419 35840 1422 Locate
trnS-UGA gene − 36076 36167 92 Locate
psbZ gene + 36487 36675 189 Locate
trnG-GCC gene + 36947 37017 71 Locate
trnfM-CAU gene − 37172 37245 74 Locate
rps14 gene − 37395 37697 303 Locate
psaB gene − 37825 40029 2205 Locate
psaA gene − 40055 42307 2253 Locate
ycf3 gene − 42982 44904 1923 Locate
trnS-GGA gene + 45789 45875 87 Locate
rps4 gene − 46162 46767 606 Locate
trnT-UGU gene − 47092 47164 73 Locate
trnL-UAA gene + 47849 48410 562 Locate
trnF-GAA gene + 48717 48789 73 Locate
ndhJ gene − 49438 49914 477 Locate
ndhK gene − 50022 50699 678 Locate
ndhC gene − 50752 51114 363 Locate
trnV-UAC gene − 52111 52763 653 Locate
trnM-CAU gene + 52944 53016 73 Locate
atpE gene − 53226 53627 402 Locate
atpB gene − 53624 55111 1488 Locate
rbcL gene + 55863 57326 1464 Locate
accD gene + 58061 59527 1467 Locate
psaI gene + 60244 60354 111 Locate
ycf4 gene + 60788 61342 555 Locate
cemA gene + 62080 62679 600 Locate
petA gene + 62886 63848 963 Locate
psbJ gene − 64881 65003 123 Locate
psbL gene − 65137 65253 117 Locate
psbF gene − 65277 65396 120 Locate
psbE gene − 65411 65662 252 Locate
petL gene + 66571 66666 96 Locate
petG gene + 66842 66955 114 Locate
trnW-CCA gene − 67074 67147 74 Locate
trnP-UGG gene − 67317 67390 74 Locate
psaJ gene + 67663 67797 135 Locate
rpl33 gene + 68272 68472 201 Locate
rps18 gene + 68647 68952 306 Locate
rpl20 gene − 69191 69577 387 Locate
rps12 gene − 70366 70491 126 Locate
clpP gene − 70628 72561 1934 Locate
psbB gene + 73028 74554 1527 Locate
psbT gene + 74746 74847 102 Locate
psbN gene − 74921 75052 132 Locate
psbH gene + 75156 75377 222 Locate
petB gene + 75502 76870 1369 Locate
petD gene + 77059 78254 1196 Locate
rpoA gene − 78629 79423 795 Locate
rps11 gene − 79495 79911 417 Locate
rpl36 gene − 80013 80126 114 Locate
infA gene − 80222 80455 234 Locate
rps8 gene − 80575 80985 411 Locate
rpl14 gene − 81155 81523 369 Locate
rpl16 gene − 81650 82893 1244 Locate
rps3 gene − 83048 83710 663 Locate
rpl22 gene − 83712 84167 456 Locate
rps19 gene − 84227 84505 279 Locate
rpl2 gene − 84560 86042 1483 Locate
rpl23 gene − 86061 86342 282 Locate
trnI-CAU gene − 86502 86575 74 Locate
ycf2 gene + 86664 93473 6810 Locate
ycf15 gene + 93564 93812 249 Locate
trnL-CAA gene − 94068 94148 81 Locate
ndhB gene − 94691 96848 2158 Locate
rps7 gene − 97177 97644 468 Locate
rps12 gene − 97698 98488 791 Locate
trnV-GAC gene + 100066 100137 72 Locate
rrn16 gene + 100365 101855 1491 Locate
trnI-GAU gene + 102154 103174 1021 Locate
trnA-UGC gene + 103239 104122 884 Locate
rrn23 gene + 104292 107104 2813 Locate
rrn4.5 gene + 107203 107305 103 Locate
rrn5 gene + 107553 107673 121 Locate
trnR-ACG gene + 107908 107981 74 Locate
trnN-GUU gene − 108528 108599 72 Locate
ndhF gene − 109676 111916 2241 Locate
rpl32 gene + 112437 112613 177 Locate
trnL-UAG gene + 113059 113138 80 Locate
ccsA gene + 113222 114196 975 Locate
ndhD gene − 114429 115931 1503 Locate
psaC gene − 116051 116296 246 Locate
ndhE gene − 116553 116858 306 Locate
ndhG gene − 117089 117619 531 Locate
ndhI gene − 117984 118484 501 Locate
ndhA gene − 118565 120659 2095 Locate
ndhH gene − 120661 121842 1182 Locate
rps15 gene − 121945 122277 333 Locate
ycf1 gene − 122489 128128 5640 Locate
trnN-GUU gene + 128347 128418 72 Locate
trnR-ACG gene − 128965 129038 74 Locate
rrn5 gene − 129273 129393 121 Locate
rrn4.5 gene − 129641 129743 103 Locate
rrn23 gene − 129842 132654 2813 Locate
trnA-UGC gene − 132824 133707 884 Locate
trnI-GAU gene − 133772 134792 1021 Locate
ycf68 gene − 134398 134637 240 Locate
rrn16 gene − 135091 136581 1491 Locate
trnV-GAC gene − 136809 136880 72 Locate
rps12 gene + 138458 139248 791 Locate
rps7 gene + 139302 139769 468 Locate
ndhB gene + 140098 142255 2158 Locate
trnL-CAA gene + 142798 142878 81 Locate
ycf15 gene − 143134 143382 249 Locate
ycf2 gene − 143473 150282 6810 Locate
trnI-CAU gene + 150371 150444 74 Locate
rpl23 gene + 150604 150885 282 Locate
rpl2 gene + 150904 152386 1483 Locate
Status Available
Accession PQ059296.1
Length 152,481 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources