Scutellaria leptosiphon chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420940.1 · 10–83 bp · −
psbA · MW420940.1 · 381–1,439 bp · −
trnK-UUU · MW420940.1 · 1,677–4,252 bp · −
matK · MW420940.1 · 1,963–3,489 bp · −
rps16 · MW420940.1 · 5,154–6,311 bp · −
trnQ-UUC · MW420940.1 · 7,442–7,513 bp · −
trnS-GCU · MW420940.1 · 8,641–8,728 bp · −
atpA · MW420940.1 · 10,524–12,047 bp · −
atpF · MW420940.1 · 12,128–13,356 bp · −
atpH · MW420940.1 · 13,715–13,960 bp · −
atpI · MW420940.1 · 14,948–15,691 bp · −
rps2 · MW420940.1 · 16,037–16,747 bp · −
rpoC2 · MW420940.1 · 16,964–21,175 bp · −
rpoC1 · MW420940.1 · 21,330–24,157 bp · −
rpoB · MW420940.1 · 24,184–27,396 bp · −
psbM · MW420940.1 · 30,428–30,532 bp · −
trnD-GUC · MW420940.1 · 31,058–31,131 bp · −
trnY-GUA · MW420940.1 · 31,245–31,328 bp · −
trnE-UUC · MW420940.1 · 31,388–31,460 bp · −
trnS-UCA · MW420940.1 · 36,077–36,169 bp · −
trnfM-CAU · MW420940.1 · 37,171–37,244 bp · −
rps14 · MW420940.1 · 37,399–37,701 bp · −
psaB · MW420940.1 · 37,830–40,034 bp · −
psaA · MW420940.1 · 40,060–42,312 bp · −
ycf3 · MW420940.1 · 43,005–44,926 bp · −
rps4 · MW420940.1 · 46,171–46,776 bp · −
trnT-UGU · MW420940.1 · 47,116–47,188 bp · −
ndhJ · MW420940.1 · 49,443–49,919 bp · −
ndhK · MW420940.1 · 50,028–50,705 bp · −
ndhC · MW420940.1 · 50,759–51,121 bp · −
trnV-UAC · MW420940.1 · 52,107–52,759 bp · −
atpE · MW420940.1 · 53,214–53,615 bp · −
atpB · MW420940.1 · 53,612–55,108 bp · −
pabJ · MW420940.1 · 64,846–64,968 bp · −
psbL · MW420940.1 · 65,102–65,218 bp · −
psbF · MW420940.1 · 65,242–65,361 bp · −
psbE · MW420940.1 · 65,376–65,627 bp · −
trnW-CCA · MW420940.1 · 67,005–67,078 bp · −
trnP-UGG · MW420940.1 · 67,249–67,322 bp · −
rpl20 · MW420940.1 · 69,120–69,506 bp · −
rps12 · MW420940.1 · 70,289–70,414 bp · −
rps12 · MW420940.1 · 98,150–98,378 bp · −
rps12 · MW420940.1 · 97,588–97,613 bp · −
clpP · MW420940.1 · 70,556–72,485 bp · −
psbN · MW420940.1 · 74,830–74,961 bp · −
rpoA · MW420940.1 · 78,481–79,335 bp · −
rps11 · MW420940.1 · 79,407–79,823 bp · −
rpl36 · MW420940.1 · 79,925–80,038 bp · −
infA · MW420940.1 · 80,133–80,366 bp · −
rps8 · MW420940.1 · 80,489–80,899 bp · −
rpl14 · MW420940.1 · 81,051–81,419 bp · −
rpl16 · MW420940.1 · 81,546–82,779 bp · −
rps3 · MW420940.1 · 82,935–83,597 bp · −
rpl22 · MW420940.1 · 83,599–84,054 bp · −
rps19 · MW420940.1 · 84,114–84,392 bp · −
rpl2 · MW420940.1 · 84,447–85,928 bp · −
rpl23 · MW420940.1 · 85,947–86,228 bp · −
trnI-CAU · MW420940.1 · 86,388–86,461 bp · −
trnL-CAA · MW420940.1 · 93,958–94,038 bp · −
ndhB · MW420940.1 · 94,581–96,792 bp · −
rps7 · MW420940.1 · 97,067–97,534 bp · −
ndhF · MW420940.1 · 109,542–111,803 bp · −
ndhD · MW420940.1 · 114,165–115,694 bp · −
psaC · MW420940.1 · 115,794–116,039 bp · −
ndhE · MW420940.1 · 116,295–116,600 bp · −
ndhG · MW420940.1 · 116,817–117,347 bp · −
ndhI · MW420940.1 · 117,714–118,214 bp · −
ndhA · MW420940.1 · 118,295–120,416 bp · −
ndhH · MW420940.1 · 120,418–121,599 bp · −
rps15 · MW420940.1 · 121,696–121,968 bp · −
ycf1 · MW420940.1 · 122,162–127,678 bp · −
trnR-ACG · MW420940.1 · 128,627–128,700 bp · −
rrn5 · MW420940.1 · 128,935–129,055 bp · −
rrn4.5 · MW420940.1 · 129,303–129,405 bp · −
rrn23 · MW420940.1 · 129,504–132,315 bp · −
trnA-UGC · MW420940.1 · 132,485–133,372 bp · −
trnI-GAU · MW420940.1 · 133,438–134,456 bp · −
rrn16 · MW420940.1 · 134,755–136,245 bp · −
trnV-GAC · MW420940.1 · 136,472–136,543 bp · −
ycf15 · MW420940.1 · 142,795–142,992 bp · −
ycf2 · MW420940.1 · 143,134–149,943 bp · −
psbK · MW420940.1 · 7,838–8,023 bp · +
psbI · MW420940.1 · 8,413–8,523 bp · +
trnG-CGA · MW420940.1 · 9,425–10,181 bp · +
trnR-UCU · MW420940.1 · 10,356–10,427 bp · +
trnC-GCA · MW420940.1 · 28,557–28,627 bp · +
petN · MW420940.1 · 29,338–29,427 bp · +
trnT-GGU · MW420940.1 · 32,036–32,107 bp · +
psbD · MW420940.1 · 33,411–34,472 bp · +
psbC · MW420940.1 · 34,420–35,841 bp · +
psbZ · MW420940.1 · 36,485–36,673 bp · +
trnG-GCC · MW420940.1 · 36,953–37,023 bp · +
trnS-GGA · MW420940.1 · 45,809–45,895 bp · +
trnL-UAA · MW420940.1 · 47,866–48,426 bp · +
trnF-GAA · MW420940.1 · 48,730–48,802 bp · +
trnM-CAU · MW420940.1 · 52,948–53,020 bp · +
rbcL · MW420940.1 · 55,881–57,323 bp · +
accD · MW420940.1 · 58,049–59,527 bp · +
psaI · MW420940.1 · 60,233–60,343 bp · +
ycf4 · MW420940.1 · 60,769–61,323 bp · +
cemA · MW420940.1 · 62,012–62,671 bp · +
petA · MW420940.1 · 62,878–63,840 bp · +
petL · MW420940.1 · 66,502–66,597 bp · +
petG · MW420940.1 · 66,773–66,886 bp · +
psbJ · MW420940.1 · 67,593–67,727 bp · +
rpl33 · MW420940.1 · 68,205–68,405 bp · +
rps18 · MW420940.1 · 68,580–68,885 bp · +
rps12 · MW420940.1 · 138,115–138,343 bp · +
rps12 · MW420940.1 · 138,880–138,905 bp · +
psbB · MW420940.1 · 72,944–74,470 bp · +
psbT · MW420940.1 · 74,662–74,769 bp · +
psbH · MW420940.1 · 75,065–75,286 bp · +
petB · MW420940.1 · 75,411–76,784 bp · +
petD · MW420940.1 · 76,967–78,172 bp · +
ycf2 · MW420940.1 · 86,550–93,359 bp · +
ycf15 · MW420940.1 · 93,501–93,698 bp · +
trnV-GAC · MW420940.1 · 99,950–100,021 bp · +
rrn16 · MW420940.1 · 100,248–101,738 bp · +
trnI-GAU · MW420940.1 · 102,037–103,055 bp · +
trnA-UGC · MW420940.1 · 103,121–104,008 bp · +
rrn23 · MW420940.1 · 104,178–106,989 bp · +
rrn4.5 · MW420940.1 · 107,088–107,190 bp · +
rrn5 · MW420940.1 · 107,438–107,558 bp · +
trnR-ACG · MW420940.1 · 107,793–107,866 bp · +
trnN-GUU · MW420940.1 · 108,414–108,485 bp · +
rpl32 · MW420940.1 · 112,131–112,307 bp · +
trnL-UAG · MW420940.1 · 112,754–112,833 bp · +
ccsA · MW420940.1 · 112,934–113,908 bp · +
trnN-GUU · MW420940.1 · 128,008–128,079 bp · +
rps7 · MW420940.1 · 138,959–139,426 bp · +
ndhB · MW420940.1 · 139,701–141,912 bp · +
trnL-CAA · MW420940.1 · 142,455–142,535 bp · +
trnI-CAU · MW420940.1 · 150,032–150,105 bp · +
rpl23 · MW420940.1 · 150,265–150,546 bp · +
rpl2 · MW420940.1 · 150,565–152,046 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria leptosiphon
ANNOTATED PLASTOME
MW420940.1
152,146 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38036 76073 114110 152146 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1677 4252 2576 Locate
matK gene − 1963 3489 1527 Locate
rps16 gene − 5154 6311 1158 Locate
trnQ-UUC gene − 7442 7513 72 Locate
psbK gene + 7838 8023 186 Locate
psbI gene + 8413 8523 111 Locate
trnS-GCU gene − 8641 8728 88 Locate
trnG-CGA gene + 9425 10181 757 Locate
trnR-UCU gene + 10356 10427 72 Locate
atpA gene − 10524 12047 1524 Locate
atpF gene − 12128 13356 1229 Locate
atpH gene − 13715 13960 246 Locate
atpI gene − 14948 15691 744 Locate
rps2 gene − 16037 16747 711 Locate
rpoC2 gene − 16964 21175 4212 Locate
rpoC1 gene − 21330 24157 2828 Locate
rpoB gene − 24184 27396 3213 Locate
trnC-GCA gene + 28557 28627 71 Locate
petN gene + 29338 29427 90 Locate
psbM gene − 30428 30532 105 Locate
trnD-GUC gene − 31058 31131 74 Locate
trnY-GUA gene − 31245 31328 84 Locate
trnE-UUC gene − 31388 31460 73 Locate
trnT-GGU gene + 32036 32107 72 Locate
psbD gene + 33411 34472 1062 Locate
psbC gene + 34420 35841 1422 Locate
trnS-UCA gene − 36077 36169 93 Locate
psbZ gene + 36485 36673 189 Locate
trnG-GCC gene + 36953 37023 71 Locate
trnfM-CAU gene − 37171 37244 74 Locate
rps14 gene − 37399 37701 303 Locate
psaB gene − 37830 40034 2205 Locate
psaA gene − 40060 42312 2253 Locate
ycf3 gene − 43005 44926 1922 Locate
trnS-GGA gene + 45809 45895 87 Locate
rps4 gene − 46171 46776 606 Locate
trnT-UGU gene − 47116 47188 73 Locate
trnL-UAA gene + 47866 48426 561 Locate
trnF-GAA gene + 48730 48802 73 Locate
ndhJ gene − 49443 49919 477 Locate
ndhK gene − 50028 50705 678 Locate
ndhC gene − 50759 51121 363 Locate
trnV-UAC gene − 52107 52759 653 Locate
trnM-CAU gene + 52948 53020 73 Locate
atpE gene − 53214 53615 402 Locate
atpB gene − 53612 55108 1497 Locate
rbcL gene + 55881 57323 1443 Locate
accD gene + 58049 59527 1479 Locate
psaI gene + 60233 60343 111 Locate
ycf4 gene + 60769 61323 555 Locate
cemA gene + 62012 62671 660 Locate
petA gene + 62878 63840 963 Locate
pabJ gene − 64846 64968 123 Locate
psbL gene − 65102 65218 117 Locate
psbF gene − 65242 65361 120 Locate
psbE gene − 65376 65627 252 Locate
petL gene + 66502 66597 96 Locate
petG gene + 66773 66886 114 Locate
trnW-CCA gene − 67005 67078 74 Locate
trnP-UGG gene − 67249 67322 74 Locate
psbJ gene + 67593 67727 135 Locate
rpl33 gene + 68205 68405 201 Locate
rps18 gene + 68580 68885 306 Locate
rpl20 gene − 69120 69506 387 Locate
rps12 gene − 70289 70414 126 Locate
clpP gene − 70556 72485 1930 Locate
psbB gene + 72944 74470 1527 Locate
psbT gene + 74662 74769 108 Locate
psbN gene − 74830 74961 132 Locate
psbH gene + 75065 75286 222 Locate
petB gene + 75411 76784 1374 Locate
petD gene + 76967 78172 1206 Locate
rpoA gene − 78481 79335 855 Locate
rps11 gene − 79407 79823 417 Locate
rpl36 gene − 79925 80038 114 Locate
infA gene − 80133 80366 234 Locate
rps8 gene − 80489 80899 411 Locate
rpl14 gene − 81051 81419 369 Locate
rpl16 gene − 81546 82779 1234 Locate
rps3 gene − 82935 83597 663 Locate
rpl22 gene − 83599 84054 456 Locate
rps19 gene − 84114 84392 279 Locate
rpl2 gene − 84447 85928 1482 Locate
rpl23 gene − 85947 86228 282 Locate
trnI-CAU gene − 86388 86461 74 Locate
ycf2 gene + 86550 93359 6810 Locate
ycf15 gene + 93501 93698 198 Locate
trnL-CAA gene − 93958 94038 81 Locate
ndhB gene − 94581 96792 2212 Locate
rps7 gene − 97067 97534 468 Locate
rps12 gene − 97588 97613 26 Locate
rps12 gene − 98150 98378 229 Locate
trnV-GAC gene + 99950 100021 72 Locate
rrn16 gene + 100248 101738 1491 Locate
trnI-GAU gene + 102037 103055 1019 Locate
trnA-UGC gene + 103121 104008 888 Locate
rrn23 gene + 104178 106989 2812 Locate
rrn4.5 gene + 107088 107190 103 Locate
rrn5 gene + 107438 107558 121 Locate
trnR-ACG gene + 107793 107866 74 Locate
trnN-GUU gene + 108414 108485 72 Locate
ndhF gene − 109542 111803 2262 Locate
rpl32 gene + 112131 112307 177 Locate
trnL-UAG gene + 112754 112833 80 Locate
ccsA gene + 112934 113908 975 Locate
ndhD gene − 114165 115694 1530 Locate
psaC gene − 115794 116039 246 Locate
ndhE gene − 116295 116600 306 Locate
ndhG gene − 116817 117347 531 Locate
ndhI gene − 117714 118214 501 Locate
ndhA gene − 118295 120416 2122 Locate
ndhH gene − 120418 121599 1182 Locate
rps15 gene − 121696 121968 273 Locate
ycf1 gene − 122162 127678 5517 Locate
trnN-GUU gene + 128008 128079 72 Locate
trnR-ACG gene − 128627 128700 74 Locate
rrn5 gene − 128935 129055 121 Locate
rrn4.5 gene − 129303 129405 103 Locate
rrn23 gene − 129504 132315 2812 Locate
trnA-UGC gene − 132485 133372 888 Locate
trnI-GAU gene − 133438 134456 1019 Locate
rrn16 gene − 134755 136245 1491 Locate
trnV-GAC gene − 136472 136543 72 Locate
rps12 gene + 138115 138343 229 Locate
rps12 gene + 138880 138905 26 Locate
rps7 gene + 138959 139426 468 Locate
ndhB gene + 139701 141912 2212 Locate
trnL-CAA gene + 142455 142535 81 Locate
ycf15 gene − 142795 142992 198 Locate
ycf2 gene − 143134 149943 6810 Locate
trnI-CAU gene + 150032 150105 74 Locate
rpl23 gene + 150265 150546 282 Locate
rpl2 gene + 150565 152046 1482 Locate
Status Available
Accession MW420940.1
Length 152,146 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 28 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources