Scutellaria linarioides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059316.1 · 3–76 bp · −
psbA · PQ059316.1 · 369–1,427 bp · −
trnK-UUU · PQ059316.1 · 1,661–4,249 bp · −
matK · PQ059316.1 · 1,956–3,491 bp · −
rps16 · PQ059316.1 · 5,122–6,289 bp · −
trnQ-UUG · PQ059316.1 · 7,309–7,380 bp · −
trnS-GCU · PQ059316.1 · 8,508–8,595 bp · −
atpA · PQ059316.1 · 10,377–11,900 bp · −
atpF · PQ059316.1 · 11,983–13,210 bp · −
atpH · PQ059316.1 · 13,573–13,818 bp · −
atpI · PQ059316.1 · 14,814–15,557 bp · −
rps2 · PQ059316.1 · 15,906–16,616 bp · −
rpoC2 · PQ059316.1 · 16,833–21,038 bp · −
rpoC1 · PQ059316.1 · 21,193–24,021 bp · −
rpoB · PQ059316.1 · 24,048–27,260 bp · −
psbM · PQ059316.1 · 30,296–30,400 bp · −
trnD-GUC · PQ059316.1 · 30,927–31,000 bp · −
trnY-GUA · PQ059316.1 · 31,114–31,197 bp · −
trnE-UUC · PQ059316.1 · 31,258–31,330 bp · −
trnS-UGA · PQ059316.1 · 35,945–36,036 bp · −
trnfM-CAU · PQ059316.1 · 37,040–37,113 bp · −
rps14 · PQ059316.1 · 37,263–37,565 bp · −
psaB · PQ059316.1 · 37,693–39,897 bp · −
psaA · PQ059316.1 · 39,923–42,175 bp · −
ycf3 · PQ059316.1 · 42,845–44,766 bp · −
rps4 · PQ059316.1 · 46,024–46,629 bp · −
trnT-UGU · PQ059316.1 · 46,970–47,042 bp · −
ndhJ · PQ059316.1 · 49,306–49,782 bp · −
ndhK · PQ059316.1 · 49,890–50,567 bp · −
ndhC · PQ059316.1 · 50,620–50,982 bp · −
trnV-UAC · PQ059316.1 · 51,838–52,490 bp · −
atpE · PQ059316.1 · 52,959–53,360 bp · −
atpB · PQ059316.1 · 53,357–54,844 bp · −
psbJ · PQ059316.1 · 64,446–64,568 bp · −
psbL · PQ059316.1 · 64,702–64,818 bp · −
psbF · PQ059316.1 · 64,842–64,961 bp · −
psbE · PQ059316.1 · 64,976–65,227 bp · −
trnW-CCA · PQ059316.1 · 66,639–66,712 bp · −
trnP-UGG · PQ059316.1 · 66,882–66,955 bp · −
rpl20 · PQ059316.1 · 68,755–69,141 bp · −
rps12 · PQ059316.1 · 69,930–70,055 bp · −
rps12 · PQ059316.1 · 97,266–98,056 bp · −
clpP · PQ059316.1 · 70,198–72,131 bp · −
psbN · PQ059316.1 · 74,491–74,622 bp · −
rpoA · PQ059316.1 · 77,991–79,004 bp · −
rps11 · PQ059316.1 · 79,077–79,493 bp · −
rpl36 · PQ059316.1 · 79,595–79,708 bp · −
infA · PQ059316.1 · 79,804–80,037 bp · −
rps8 · PQ059316.1 · 80,157–80,567 bp · −
rpl14 · PQ059316.1 · 80,739–81,107 bp · −
rpl16 · PQ059316.1 · 81,234–82,460 bp · −
rps3 · PQ059316.1 · 82,616–83,278 bp · −
rpl22 · PQ059316.1 · 83,280–83,735 bp · −
rps19 · PQ059316.1 · 83,795–84,073 bp · −
rpl2 · PQ059316.1 · 84,128–85,610 bp · −
rpl23 · PQ059316.1 · 85,629–85,910 bp · −
trnI-CAU · PQ059316.1 · 86,070–86,143 bp · −
trnL-CAA · PQ059316.1 · 93,636–93,716 bp · −
ndhB · PQ059316.1 · 94,259–96,470 bp · −
rps7 · PQ059316.1 · 96,745–97,212 bp · −
trnN-GUU · PQ059316.1 · 108,093–108,164 bp · −
ndhF · PQ059316.1 · 109,241–111,481 bp · −
ndhD · PQ059316.1 · 113,999–115,501 bp · −
psaC · PQ059316.1 · 115,621–115,866 bp · −
ndhE · PQ059316.1 · 116,123–116,428 bp · −
ndhG · PQ059316.1 · 116,650–117,180 bp · −
ndhI · PQ059316.1 · 117,542–118,042 bp · −
ndhA · PQ059316.1 · 118,123–120,214 bp · −
ndhH · PQ059316.1 · 120,216–121,427 bp · −
rps15 · PQ059316.1 · 121,500–121,832 bp · −
ycf1 · PQ059316.1 · 122,030–127,675 bp · −
trnR-ACG · PQ059316.1 · 128,505–128,578 bp · −
rrn5 · PQ059316.1 · 128,813–128,933 bp · −
rrn4.5 · PQ059316.1 · 129,181–129,283 bp · −
rrn23 · PQ059316.1 · 129,382–132,194 bp · −
trnA-UGC · PQ059316.1 · 132,364–133,245 bp · −
trnI-GAU · PQ059316.1 · 133,310–134,336 bp · −
ycf68 · PQ059316.1 · 133,942–134,181 bp · −
rrn16 · PQ059316.1 · 134,635–136,125 bp · −
trnV-GAC · PQ059316.1 · 136,353–136,424 bp · −
ycf15 · PQ059316.1 · 142,678–142,875 bp · −
ycf2 · PQ059316.1 · 143,017–149,826 bp · −
psbK · PQ059316.1 · 7,705–7,890 bp · +
psbI · PQ059316.1 · 8,280–8,390 bp · +
trnG-UCC · PQ059316.1 · 9,278–10,038 bp · +
trnR-UCU · PQ059316.1 · 10,209–10,280 bp · +
trnC-GCA · PQ059316.1 · 28,421–28,491 bp · +
petN · PQ059316.1 · 29,201–29,290 bp · +
trnT-GGU · PQ059316.1 · 31,906–31,977 bp · +
psbD · PQ059316.1 · 33,278–34,339 bp · +
psbC · PQ059316.1 · 34,287–35,708 bp · +
psbZ · PQ059316.1 · 36,356–36,544 bp · +
trnG-GCC · PQ059316.1 · 36,816–36,886 bp · +
trnS-GGA · PQ059316.1 · 45,652–45,738 bp · +
trnL-UAA · PQ059316.1 · 47,720–48,280 bp · +
trnF-GAA · PQ059316.1 · 48,586–48,658 bp · +
trnM-CAU · PQ059316.1 · 52,671–52,743 bp · +
rbcL · PQ059316.1 · 55,595–57,055 bp · +
accD · PQ059316.1 · 57,791–59,257 bp · +
psaI · PQ059316.1 · 59,815–59,925 bp · +
ycf4 · PQ059316.1 · 60,351–60,905 bp · +
cemA · PQ059316.1 · 61,643–62,242 bp · +
petA · PQ059316.1 · 62,449–63,411 bp · +
petL · PQ059316.1 · 66,136–66,231 bp · +
petG · PQ059316.1 · 66,407–66,520 bp · +
psaJ · PQ059316.1 · 67,228–67,362 bp · +
rpl33 · PQ059316.1 · 67,836–68,036 bp · +
rps18 · PQ059316.1 · 68,211–68,516 bp · +
rps12 · PQ059316.1 · 138,002–138,792 bp · +
psbB · PQ059316.1 · 72,598–74,124 bp · +
psbT · PQ059316.1 · 74,316–74,417 bp · +
psbH · PQ059316.1 · 74,726–74,947 bp · +
petB · PQ059316.1 · 75,072–76,438 bp · +
petD · PQ059316.1 · 76,627–77,828 bp · +
ycf2 · PQ059316.1 · 86,232–93,041 bp · +
ycf15 · PQ059316.1 · 93,183–93,380 bp · +
trnV-GAC · PQ059316.1 · 99,634–99,705 bp · +
rrn16 · PQ059316.1 · 99,933–101,423 bp · +
trnI-GAU · PQ059316.1 · 101,722–102,748 bp · +
trnA-UGC · PQ059316.1 · 102,813–103,694 bp · +
rrn23 · PQ059316.1 · 103,864–106,676 bp · +
rrn4.5 · PQ059316.1 · 106,775–106,877 bp · +
rrn5 · PQ059316.1 · 107,125–107,245 bp · +
trnR-ACG · PQ059316.1 · 107,480–107,553 bp · +
rpl32 · PQ059316.1 · 112,002–112,178 bp · +
trnL-UAG · PQ059316.1 · 112,616–112,695 bp · +
ccsA · PQ059316.1 · 112,792–113,766 bp · +
trnN-GUU · PQ059316.1 · 127,894–127,965 bp · +
rps7 · PQ059316.1 · 138,846–139,313 bp · +
ndhB · PQ059316.1 · 139,588–141,799 bp · +
trnL-CAA · PQ059316.1 · 142,342–142,422 bp · +
trnI-CAU · PQ059316.1 · 149,915–149,988 bp · +
rpl23 · PQ059316.1 · 150,148–150,429 bp · +
rpl2 · PQ059316.1 · 150,448–151,930 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria linarioides
ANNOTATED PLASTOME
PQ059316.1
152,025 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38006 76012 114019 152025 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1661 4249 2589 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5122 6289 1168 Locate
trnQ-UUG gene − 7309 7380 72 Locate
psbK gene + 7705 7890 186 Locate
psbI gene + 8280 8390 111 Locate
trnS-GCU gene − 8508 8595 88 Locate
trnG-UCC gene + 9278 10038 761 Locate
trnR-UCU gene + 10209 10280 72 Locate
atpA gene − 10377 11900 1524 Locate
atpF gene − 11983 13210 1228 Locate
atpH gene − 13573 13818 246 Locate
atpI gene − 14814 15557 744 Locate
rps2 gene − 15906 16616 711 Locate
rpoC2 gene − 16833 21038 4206 Locate
rpoC1 gene − 21193 24021 2829 Locate
rpoB gene − 24048 27260 3213 Locate
trnC-GCA gene + 28421 28491 71 Locate
petN gene + 29201 29290 90 Locate
psbM gene − 30296 30400 105 Locate
trnD-GUC gene − 30927 31000 74 Locate
trnY-GUA gene − 31114 31197 84 Locate
trnE-UUC gene − 31258 31330 73 Locate
trnT-GGU gene + 31906 31977 72 Locate
psbD gene + 33278 34339 1062 Locate
psbC gene + 34287 35708 1422 Locate
trnS-UGA gene − 35945 36036 92 Locate
psbZ gene + 36356 36544 189 Locate
trnG-GCC gene + 36816 36886 71 Locate
trnfM-CAU gene − 37040 37113 74 Locate
rps14 gene − 37263 37565 303 Locate
psaB gene − 37693 39897 2205 Locate
psaA gene − 39923 42175 2253 Locate
ycf3 gene − 42845 44766 1922 Locate
trnS-GGA gene + 45652 45738 87 Locate
rps4 gene − 46024 46629 606 Locate
trnT-UGU gene − 46970 47042 73 Locate
trnL-UAA gene + 47720 48280 561 Locate
trnF-GAA gene + 48586 48658 73 Locate
ndhJ gene − 49306 49782 477 Locate
ndhK gene − 49890 50567 678 Locate
ndhC gene − 50620 50982 363 Locate
trnV-UAC gene − 51838 52490 653 Locate
trnM-CAU gene + 52671 52743 73 Locate
atpE gene − 52959 53360 402 Locate
atpB gene − 53357 54844 1488 Locate
rbcL gene + 55595 57055 1461 Locate
accD gene + 57791 59257 1467 Locate
psaI gene + 59815 59925 111 Locate
ycf4 gene + 60351 60905 555 Locate
cemA gene + 61643 62242 600 Locate
petA gene + 62449 63411 963 Locate
psbJ gene − 64446 64568 123 Locate
psbL gene − 64702 64818 117 Locate
psbF gene − 64842 64961 120 Locate
psbE gene − 64976 65227 252 Locate
petL gene + 66136 66231 96 Locate
petG gene + 66407 66520 114 Locate
trnW-CCA gene − 66639 66712 74 Locate
trnP-UGG gene − 66882 66955 74 Locate
psaJ gene + 67228 67362 135 Locate
rpl33 gene + 67836 68036 201 Locate
rps18 gene + 68211 68516 306 Locate
rpl20 gene − 68755 69141 387 Locate
rps12 gene − 69930 70055 126 Locate
clpP gene − 70198 72131 1934 Locate
psbB gene + 72598 74124 1527 Locate
psbT gene + 74316 74417 102 Locate
psbN gene − 74491 74622 132 Locate
psbH gene + 74726 74947 222 Locate
petB gene + 75072 76438 1367 Locate
petD gene + 76627 77828 1202 Locate
rpoA gene − 77991 79004 1014 Locate
rps11 gene − 79077 79493 417 Locate
rpl36 gene − 79595 79708 114 Locate
infA gene − 79804 80037 234 Locate
rps8 gene − 80157 80567 411 Locate
rpl14 gene − 80739 81107 369 Locate
rpl16 gene − 81234 82460 1227 Locate
rps3 gene − 82616 83278 663 Locate
rpl22 gene − 83280 83735 456 Locate
rps19 gene − 83795 84073 279 Locate
rpl2 gene − 84128 85610 1483 Locate
rpl23 gene − 85629 85910 282 Locate
trnI-CAU gene − 86070 86143 74 Locate
ycf2 gene + 86232 93041 6810 Locate
ycf15 gene + 93183 93380 198 Locate
trnL-CAA gene − 93636 93716 81 Locate
ndhB gene − 94259 96470 2212 Locate
rps7 gene − 96745 97212 468 Locate
rps12 gene − 97266 98056 791 Locate
trnV-GAC gene + 99634 99705 72 Locate
rrn16 gene + 99933 101423 1491 Locate
trnI-GAU gene + 101722 102748 1027 Locate
trnA-UGC gene + 102813 103694 882 Locate
rrn23 gene + 103864 106676 2813 Locate
rrn4.5 gene + 106775 106877 103 Locate
rrn5 gene + 107125 107245 121 Locate
trnR-ACG gene + 107480 107553 74 Locate
trnN-GUU gene − 108093 108164 72 Locate
ndhF gene − 109241 111481 2241 Locate
rpl32 gene + 112002 112178 177 Locate
trnL-UAG gene + 112616 112695 80 Locate
ccsA gene + 112792 113766 975 Locate
ndhD gene − 113999 115501 1503 Locate
psaC gene − 115621 115866 246 Locate
ndhE gene − 116123 116428 306 Locate
ndhG gene − 116650 117180 531 Locate
ndhI gene − 117542 118042 501 Locate
ndhA gene − 118123 120214 2092 Locate
ndhH gene − 120216 121427 1212 Locate
rps15 gene − 121500 121832 333 Locate
ycf1 gene − 122030 127675 5646 Locate
trnN-GUU gene + 127894 127965 72 Locate
trnR-ACG gene − 128505 128578 74 Locate
rrn5 gene − 128813 128933 121 Locate
rrn4.5 gene − 129181 129283 103 Locate
rrn23 gene − 129382 132194 2813 Locate
trnA-UGC gene − 132364 133245 882 Locate
trnI-GAU gene − 133310 134336 1027 Locate
ycf68 gene − 133942 134181 240 Locate
rrn16 gene − 134635 136125 1491 Locate
trnV-GAC gene − 136353 136424 72 Locate
rps12 gene + 138002 138792 791 Locate
rps7 gene + 138846 139313 468 Locate
ndhB gene + 139588 141799 2212 Locate
trnL-CAA gene + 142342 142422 81 Locate
ycf15 gene − 142678 142875 198 Locate
ycf2 gene − 143017 149826 6810 Locate
trnI-CAU gene + 149915 149988 74 Locate
rpl23 gene + 150148 150429 282 Locate
rpl2 gene + 150448 151930 1483 Locate
Status Available
Accession PQ059316.1
Length 152,025 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources