Scutellaria linearis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420945.1 · 4–77 bp · −
psbA · MW420945.1 · 374–1,432 bp · −
trnK-UUU · MW420945.1 · 1,678–4,246 bp · −
matK · MW420945.1 · 1,965–3,485 bp · −
rps16 · MW420945.1 · 5,156–6,315 bp · −
trnQ-UUC · MW420945.1 · 7,057–7,128 bp · −
trnS-GCU · MW420945.1 · 8,257–8,344 bp · −
atpA · MW420945.1 · 10,144–11,667 bp · −
atpF · MW420945.1 · 11,750–12,979 bp · −
atpH · MW420945.1 · 13,339–13,584 bp · −
atpI · MW420945.1 · 14,572–15,315 bp · −
rps2 · MW420945.1 · 15,661–16,371 bp · −
rpoC2 · MW420945.1 · 16,586–20,791 bp · −
rpoC1 · MW420945.1 · 20,946–23,774 bp · −
rpoB · MW420945.1 · 23,801–27,013 bp · −
psbM · MW420945.1 · 30,076–30,180 bp · −
trnD-GUC · MW420945.1 · 30,706–30,779 bp · −
trnY-GUA · MW420945.1 · 30,893–30,976 bp · −
trnE-UUC · MW420945.1 · 31,036–31,108 bp · −
trnS-UCA · MW420945.1 · 35,718–35,810 bp · −
trnfM-CAU · MW420945.1 · 36,805–36,878 bp · −
rps14 · MW420945.1 · 37,032–37,334 bp · −
psaB · MW420945.1 · 37,463–39,667 bp · −
psaA · MW420945.1 · 39,693–41,945 bp · −
ycf3 · MW420945.1 · 42,629–44,550 bp · −
rps4 · MW420945.1 · 45,789–46,394 bp · −
trnT-UGU · MW420945.1 · 46,734–46,806 bp · −
ndhJ · MW420945.1 · 49,076–49,552 bp · −
ndhK · MW420945.1 · 49,661–50,338 bp · −
ndhC · MW420945.1 · 50,392–50,754 bp · −
trnV-UAC · MW420945.1 · 51,740–52,392 bp · −
atpE · MW420945.1 · 52,847–53,248 bp · −
atpB · MW420945.1 · 53,245–54,741 bp · −
pabJ · MW420945.1 · 64,477–64,599 bp · −
psbL · MW420945.1 · 64,733–64,849 bp · −
psbF · MW420945.1 · 64,873–64,992 bp · −
psbE · MW420945.1 · 65,007–65,258 bp · −
trnW-CCA · MW420945.1 · 66,636–66,709 bp · −
trnP-UGG · MW420945.1 · 66,879–66,952 bp · −
rpl20 · MW420945.1 · 68,752–69,138 bp · −
rps12 · MW420945.1 · 69,922–70,047 bp · −
rps12 · MW420945.1 · 97,184–97,974 bp · −
clpP · MW420945.1 · 70,189–72,118 bp · −
psbN · MW420945.1 · 74,455–74,586 bp · −
rpoA · MW420945.1 · 78,147–78,947 bp · −
rps11 · MW420945.1 · 79,019–79,435 bp · −
rpl36 · MW420945.1 · 79,537–79,650 bp · −
infA · MW420945.1 · 79,745–79,978 bp · −
rps8 · MW420945.1 · 80,100–80,510 bp · −
rpl14 · MW420945.1 · 80,663–81,031 bp · −
rpl16 · MW420945.1 · 81,158–82,384 bp · −
rps3 · MW420945.1 · 82,540–83,202 bp · −
rpl22 · MW420945.1 · 83,204–83,659 bp · −
rps19 · MW420945.1 · 83,719–83,997 bp · −
rpl2 · MW420945.1 · 84,052–85,533 bp · −
rpl23 · MW420945.1 · 85,552–85,833 bp · −
trnI-CAU · MW420945.1 · 85,993–86,066 bp · −
trnL-CAA · MW420945.1 · 93,554–93,634 bp · −
ndhB · MW420945.1 · 94,177–96,388 bp · −
rps7 · MW420945.1 · 96,663–97,130 bp · −
ndhF · MW420945.1 · 109,131–111,392 bp · −
ndhD · MW420945.1 · 113,767–115,296 bp · −
psaC · MW420945.1 · 115,397–115,642 bp · −
ndhE · MW420945.1 · 115,898–116,203 bp · −
ndhG · MW420945.1 · 116,420–116,950 bp · −
ndhI · MW420945.1 · 117,316–117,816 bp · −
ndhA · MW420945.1 · 117,902–120,023 bp · −
ndhH · MW420945.1 · 120,025–121,206 bp · −
rps15 · MW420945.1 · 121,303–121,575 bp · −
ycf1 · MW420945.1 · 121,768–127,293 bp · −
trnR-ACG · MW420945.1 · 128,243–128,316 bp · −
rrn5 · MW420945.1 · 128,551–128,671 bp · −
rrn4.5 · MW420945.1 · 128,919–129,021 bp · −
rrn23 · MW420945.1 · 129,120–131,931 bp · −
trnA-UGC · MW420945.1 · 132,094–132,979 bp · −
trnI-GAU · MW420945.1 · 133,045–134,064 bp · −
rrn16 · MW420945.1 · 134,363–135,853 bp · −
trnV-GAC · MW420945.1 · 136,080–136,151 bp · −
ycf15 · MW420945.1 · 142,403–142,600 bp · −
ycf2 · MW420945.1 · 142,742–149,542 bp · −
psbK · MW420945.1 · 7,453–7,638 bp · +
psbI · MW420945.1 · 8,028–8,138 bp · +
trnG-CGA · MW420945.1 · 9,045–9,801 bp · +
trnR-UCU · MW420945.1 · 9,976–10,047 bp · +
trnC-GCA · MW420945.1 · 28,174–28,244 bp · +
petN · MW420945.1 · 28,957–29,046 bp · +
trnT-GGU · MW420945.1 · 31,677–31,748 bp · +
psbD · MW420945.1 · 33,052–34,113 bp · +
psbC · MW420945.1 · 34,061–35,482 bp · +
psbZ · MW420945.1 · 36,126–36,314 bp · +
trnG-GCC · MW420945.1 · 36,589–36,659 bp · +
trnS-GGA · MW420945.1 · 45,432–45,518 bp · +
trnL-UAA · MW420945.1 · 47,487–48,046 bp · +
trnF-GAA · MW420945.1 · 48,357–48,429 bp · +
trnM-CAU · MW420945.1 · 52,581–52,653 bp · +
rbcL · MW420945.1 · 55,514–56,956 bp · +
accD · MW420945.1 · 57,670–59,148 bp · +
psaI · MW420945.1 · 59,854–59,964 bp · +
ycf4 · MW420945.1 · 60,398–60,952 bp · +
cemA · MW420945.1 · 61,641–62,300 bp · +
petA · MW420945.1 · 62,507–63,469 bp · +
petL · MW420945.1 · 66,133–66,228 bp · +
petG · MW420945.1 · 66,404–66,517 bp · +
psbJ · MW420945.1 · 67,224–67,358 bp · +
rpl33 · MW420945.1 · 67,836–68,036 bp · +
rps18 · MW420945.1 · 68,211–68,516 bp · +
rps12 · MW420945.1 · 137,723–138,513 bp · +
psbB · MW420945.1 · 72,570–74,096 bp · +
psbT · MW420945.1 · 74,287–74,394 bp · +
psbH · MW420945.1 · 74,690–74,911 bp · +
petB · MW420945.1 · 75,036–76,403 bp · +
petD · MW420945.1 · 76,586–77,792 bp · +
ycf2 · MW420945.1 · 86,155–92,955 bp · +
ycf15 · MW420945.1 · 93,097–93,294 bp · +
trnV-GAC · MW420945.1 · 99,546–99,617 bp · +
rrn16 · MW420945.1 · 99,844–101,334 bp · +
trnI-GAU · MW420945.1 · 101,633–102,652 bp · +
trnA-UGC · MW420945.1 · 102,718–103,603 bp · +
rrn23 · MW420945.1 · 103,766–106,577 bp · +
rrn4.5 · MW420945.1 · 106,676–106,778 bp · +
rrn5 · MW420945.1 · 107,026–107,146 bp · +
trnR-ACG · MW420945.1 · 107,381–107,454 bp · +
trnN-GUU · MW420945.1 · 108,003–108,074 bp · +
rpl32 · MW420945.1 · 111,720–111,896 bp · +
trnL-UAG · MW420945.1 · 112,346–112,425 bp · +
ccsA · MW420945.1 · 112,527–113,510 bp · +
trnN-GUU · MW420945.1 · 127,623–127,694 bp · +
rps7 · MW420945.1 · 138,567–139,034 bp · +
ndhB · MW420945.1 · 139,309–141,520 bp · +
trnL-CAA · MW420945.1 · 142,063–142,143 bp · +
trnI-CAU · MW420945.1 · 149,631–149,704 bp · +
rpl23 · MW420945.1 · 149,864–150,145 bp · +
rpl2 · MW420945.1 · 150,164–151,645 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria linearis
ANNOTATED PLASTOME
MW420945.1
151,745 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37936 75872 113809 151745 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1678 4246 2569 Locate
matK gene − 1965 3485 1521 Locate
rps16 gene − 5156 6315 1160 Locate
trnQ-UUC gene − 7057 7128 72 Locate
psbK gene + 7453 7638 186 Locate
psbI gene + 8028 8138 111 Locate
trnS-GCU gene − 8257 8344 88 Locate
trnG-CGA gene + 9045 9801 757 Locate
trnR-UCU gene + 9976 10047 72 Locate
atpA gene − 10144 11667 1524 Locate
atpF gene − 11750 12979 1230 Locate
atpH gene − 13339 13584 246 Locate
atpI gene − 14572 15315 744 Locate
rps2 gene − 15661 16371 711 Locate
rpoC2 gene − 16586 20791 4206 Locate
rpoC1 gene − 20946 23774 2829 Locate
rpoB gene − 23801 27013 3213 Locate
trnC-GCA gene + 28174 28244 71 Locate
petN gene + 28957 29046 90 Locate
psbM gene − 30076 30180 105 Locate
trnD-GUC gene − 30706 30779 74 Locate
trnY-GUA gene − 30893 30976 84 Locate
trnE-UUC gene − 31036 31108 73 Locate
trnT-GGU gene + 31677 31748 72 Locate
psbD gene + 33052 34113 1062 Locate
psbC gene + 34061 35482 1422 Locate
trnS-UCA gene − 35718 35810 93 Locate
psbZ gene + 36126 36314 189 Locate
trnG-GCC gene + 36589 36659 71 Locate
trnfM-CAU gene − 36805 36878 74 Locate
rps14 gene − 37032 37334 303 Locate
psaB gene − 37463 39667 2205 Locate
psaA gene − 39693 41945 2253 Locate
ycf3 gene − 42629 44550 1922 Locate
trnS-GGA gene + 45432 45518 87 Locate
rps4 gene − 45789 46394 606 Locate
trnT-UGU gene − 46734 46806 73 Locate
trnL-UAA gene + 47487 48046 560 Locate
trnF-GAA gene + 48357 48429 73 Locate
ndhJ gene − 49076 49552 477 Locate
ndhK gene − 49661 50338 678 Locate
ndhC gene − 50392 50754 363 Locate
trnV-UAC gene − 51740 52392 653 Locate
trnM-CAU gene + 52581 52653 73 Locate
atpE gene − 52847 53248 402 Locate
atpB gene − 53245 54741 1497 Locate
rbcL gene + 55514 56956 1443 Locate
accD gene + 57670 59148 1479 Locate
psaI gene + 59854 59964 111 Locate
ycf4 gene + 60398 60952 555 Locate
cemA gene + 61641 62300 660 Locate
petA gene + 62507 63469 963 Locate
pabJ gene − 64477 64599 123 Locate
psbL gene − 64733 64849 117 Locate
psbF gene − 64873 64992 120 Locate
psbE gene − 65007 65258 252 Locate
petL gene + 66133 66228 96 Locate
petG gene + 66404 66517 114 Locate
trnW-CCA gene − 66636 66709 74 Locate
trnP-UGG gene − 66879 66952 74 Locate
psbJ gene + 67224 67358 135 Locate
rpl33 gene + 67836 68036 201 Locate
rps18 gene + 68211 68516 306 Locate
rpl20 gene − 68752 69138 387 Locate
rps12 gene − 69922 70047 126 Locate
clpP gene − 70189 72118 1930 Locate
psbB gene + 72570 74096 1527 Locate
psbT gene + 74287 74394 108 Locate
psbN gene − 74455 74586 132 Locate
psbH gene + 74690 74911 222 Locate
petB gene + 75036 76403 1368 Locate
petD gene + 76586 77792 1207 Locate
rpoA gene − 78147 78947 801 Locate
rps11 gene − 79019 79435 417 Locate
rpl36 gene − 79537 79650 114 Locate
infA gene − 79745 79978 234 Locate
rps8 gene − 80100 80510 411 Locate
rpl14 gene − 80663 81031 369 Locate
rpl16 gene − 81158 82384 1227 Locate
rps3 gene − 82540 83202 663 Locate
rpl22 gene − 83204 83659 456 Locate
rps19 gene − 83719 83997 279 Locate
rpl2 gene − 84052 85533 1482 Locate
rpl23 gene − 85552 85833 282 Locate
trnI-CAU gene − 85993 86066 74 Locate
ycf2 gene + 86155 92955 6801 Locate
ycf15 gene + 93097 93294 198 Locate
trnL-CAA gene − 93554 93634 81 Locate
ndhB gene − 94177 96388 2212 Locate
rps7 gene − 96663 97130 468 Locate
rps12 gene − 97184 97974 791 Locate
trnV-GAC gene + 99546 99617 72 Locate
rrn16 gene + 99844 101334 1491 Locate
trnI-GAU gene + 101633 102652 1020 Locate
trnA-UGC gene + 102718 103603 886 Locate
rrn23 gene + 103766 106577 2812 Locate
rrn4.5 gene + 106676 106778 103 Locate
rrn5 gene + 107026 107146 121 Locate
trnR-ACG gene + 107381 107454 74 Locate
trnN-GUU gene + 108003 108074 72 Locate
ndhF gene − 109131 111392 2262 Locate
rpl32 gene + 111720 111896 177 Locate
trnL-UAG gene + 112346 112425 80 Locate
ccsA gene + 112527 113510 984 Locate
ndhD gene − 113767 115296 1530 Locate
psaC gene − 115397 115642 246 Locate
ndhE gene − 115898 116203 306 Locate
ndhG gene − 116420 116950 531 Locate
ndhI gene − 117316 117816 501 Locate
ndhA gene − 117902 120023 2122 Locate
ndhH gene − 120025 121206 1182 Locate
rps15 gene − 121303 121575 273 Locate
ycf1 gene − 121768 127293 5526 Locate
trnN-GUU gene + 127623 127694 72 Locate
trnR-ACG gene − 128243 128316 74 Locate
rrn5 gene − 128551 128671 121 Locate
rrn4.5 gene − 128919 129021 103 Locate
rrn23 gene − 129120 131931 2812 Locate
trnA-UGC gene − 132094 132979 886 Locate
trnI-GAU gene − 133045 134064 1020 Locate
rrn16 gene − 134363 135853 1491 Locate
trnV-GAC gene − 136080 136151 72 Locate
rps12 gene + 137723 138513 791 Locate
rps7 gene + 138567 139034 468 Locate
ndhB gene + 139309 141520 2212 Locate
trnL-CAA gene + 142063 142143 81 Locate
ycf15 gene − 142403 142600 198 Locate
ycf2 gene − 142742 149542 6801 Locate
trnI-CAU gene + 149631 149704 74 Locate
rpl23 gene + 149864 150145 282 Locate
rpl2 gene + 150164 151645 1482 Locate
Status Available
Accession MW420945.1
Length 151,745 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources