Scutellaria litwinowii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059317.1 · 4–77 bp · −
psbA · PQ059317.1 · 374–1,432 bp · −
trnK-UUU · PQ059317.1 · 1,674–4,256 bp · −
matK · PQ059317.1 · 1,964–3,490 bp · −
rps16 · PQ059317.1 · 5,156–6,313 bp · −
trnQ-UUG · PQ059317.1 · 7,442–7,513 bp · −
trnS-GCU · PQ059317.1 · 8,631–8,718 bp · −
atpA · PQ059317.1 · 10,522–12,045 bp · −
atpF · PQ059317.1 · 12,127–13,354 bp · −
atpH · PQ059317.1 · 13,715–13,960 bp · −
atpI · PQ059317.1 · 14,948–15,691 bp · −
rps2 · PQ059317.1 · 16,017–16,727 bp · −
rpoC2 · PQ059317.1 · 16,942–21,147 bp · −
rpoC1 · PQ059317.1 · 21,302–24,136 bp · −
rpoB · PQ059317.1 · 24,163–27,375 bp · −
psbM · PQ059317.1 · 30,468–30,572 bp · −
trnD-GUC · PQ059317.1 · 31,098–31,171 bp · −
trnY-GUA · PQ059317.1 · 31,285–31,368 bp · −
trnE-UUC · PQ059317.1 · 31,428–31,500 bp · −
trnS-UGA · PQ059317.1 · 36,119–36,210 bp · −
trnfM-CAU · PQ059317.1 · 37,211–37,284 bp · −
rps14 · PQ059317.1 · 37,439–37,741 bp · −
psaB · PQ059317.1 · 37,870–40,074 bp · −
psaA · PQ059317.1 · 40,100–42,352 bp · −
ycf3 · PQ059317.1 · 43,048–44,969 bp · −
rps4 · PQ059317.1 · 46,220–46,825 bp · −
trnT-UGU · PQ059317.1 · 47,166–47,238 bp · −
ndhJ · PQ059317.1 · 49,512–49,988 bp · −
ndhK · PQ059317.1 · 50,097–50,774 bp · −
ndhC · PQ059317.1 · 50,828–51,190 bp · −
trnV-UAC · PQ059317.1 · 52,176–52,828 bp · −
atpE · PQ059317.1 · 53,284–53,685 bp · −
atpB · PQ059317.1 · 53,682–55,178 bp · −
psbJ · PQ059317.1 · 64,941–65,063 bp · −
psbL · PQ059317.1 · 65,197–65,313 bp · −
psbF · PQ059317.1 · 65,337–65,456 bp · −
psbE · PQ059317.1 · 65,471–65,722 bp · −
trnW-CCA · PQ059317.1 · 67,100–67,173 bp · −
trnP-UGG · PQ059317.1 · 67,343–67,416 bp · −
rpl20 · PQ059317.1 · 69,216–69,602 bp · −
rps12 · PQ059317.1 · 70,399–70,512 bp · −
rps12 · PQ059317.1 · 97,661–98,451 bp · −
clpP · PQ059317.1 · 70,654–72,584 bp · −
psbN · PQ059317.1 · 74,928–75,059 bp · −
rpoA · PQ059317.1 · 78,624–79,424 bp · −
rps11 · PQ059317.1 · 79,496–79,912 bp · −
rpl36 · PQ059317.1 · 80,014–80,127 bp · −
infA · PQ059317.1 · 80,222–80,455 bp · −
rps8 · PQ059317.1 · 80,578–80,988 bp · −
rpl14 · PQ059317.1 · 81,140–81,508 bp · −
rpl16 · PQ059317.1 · 81,635–82,861 bp · −
rps3 · PQ059317.1 · 83,017–83,679 bp · −
rpl22 · PQ059317.1 · 83,681–84,136 bp · −
rps19 · PQ059317.1 · 84,196–84,474 bp · −
rpl2 · PQ059317.1 · 84,529–86,010 bp · −
rpl23 · PQ059317.1 · 86,029–86,310 bp · −
trnI-CAU · PQ059317.1 · 86,470–86,543 bp · −
trnL-CAA · PQ059317.1 · 94,031–94,111 bp · −
ndhB · PQ059317.1 · 94,654–96,865 bp · −
rps7 · PQ059317.1 · 97,140–97,607 bp · −
trnN-GUU · PQ059317.1 · 108,491–108,562 bp · −
ndhF · PQ059317.1 · 109,619–111,874 bp · −
ndhD · PQ059317.1 · 114,219–115,748 bp · −
psaC · PQ059317.1 · 115,849–116,094 bp · −
ndhE · PQ059317.1 · 116,343–116,648 bp · −
ndhG · PQ059317.1 · 116,865–117,395 bp · −
ndhI · PQ059317.1 · 117,762–118,262 bp · −
ndhA · PQ059317.1 · 118,343–120,464 bp · −
ndhH · PQ059317.1 · 120,466–121,647 bp · −
rps15 · PQ059317.1 · 121,744–122,016 bp · −
ycf1 · PQ059317.1 · 122,212–127,842 bp · −
trnR-ACG · PQ059317.1 · 128,681–128,754 bp · −
rrn5 · PQ059317.1 · 128,989–129,109 bp · −
rrn4.5 · PQ059317.1 · 129,357–129,459 bp · −
rrn23 · PQ059317.1 · 129,558–132,370 bp · −
trnA-UGC · PQ059317.1 · 132,540–133,428 bp · −
trnI-GAU · PQ059317.1 · 133,493–134,513 bp · −
ycf68 · PQ059317.1 · 134,065–134,358 bp · −
rrn16 · PQ059317.1 · 134,812–136,302 bp · −
trnV-GAC · PQ059317.1 · 136,529–136,600 bp · −
ycf15 · PQ059317.1 · 142,852–143,049 bp · −
ycf2 · PQ059317.1 · 143,191–149,991 bp · −
psbK · PQ059317.1 · 7,838–8,023 bp · +
psbI · PQ059317.1 · 8,402–8,512 bp · +
trnG-UCC · PQ059317.1 · 9,423–10,179 bp · +
trnR-UCU · PQ059317.1 · 10,354–10,425 bp · +
trnC-GCA · PQ059317.1 · 28,536–28,606 bp · +
petN · PQ059317.1 · 29,322–29,411 bp · +
trnT-GGU · PQ059317.1 · 32,076–32,147 bp · +
psbD · PQ059317.1 · 33,453–34,514 bp · +
psbC · PQ059317.1 · 34,462–35,883 bp · +
psbZ · PQ059317.1 · 36,526–36,714 bp · +
trnG-GCC · PQ059317.1 · 36,991–37,061 bp · +
trnS-GGA · PQ059317.1 · 45,858–45,944 bp · +
trnL-UAA · PQ059317.1 · 47,923–48,483 bp · +
trnF-GAA · PQ059317.1 · 48,790–48,862 bp · +
trnM-CAU · PQ059317.1 · 53,017–53,089 bp · +
rbcL · PQ059317.1 · 55,930–57,393 bp · +
accD · PQ059317.1 · 58,117–59,595 bp · +
psaI · PQ059317.1 · 60,300–60,410 bp · +
ycf4 · PQ059317.1 · 60,865–61,419 bp · +
cemA · PQ059317.1 · 62,168–62,767 bp · +
petA · PQ059317.1 · 62,974–63,936 bp · +
petL · PQ059317.1 · 66,598–66,693 bp · +
petG · PQ059317.1 · 66,868–66,981 bp · +
psaJ · PQ059317.1 · 67,625–67,822 bp · +
rpl33 · PQ059317.1 · 68,301–68,501 bp · +
rps18 · PQ059317.1 · 68,676–68,981 bp · +
rps12 · PQ059317.1 · 138,172–138,962 bp · +
psbB · PQ059317.1 · 73,043–74,569 bp · +
psbT · PQ059317.1 · 74,760–74,867 bp · +
psbH · PQ059317.1 · 75,163–75,384 bp · +
petB · PQ059317.1 · 75,509–76,881 bp · +
petD · PQ059317.1 · 77,064–78,269 bp · +
ycf2 · PQ059317.1 · 86,632–93,432 bp · +
ycf15 · PQ059317.1 · 93,574–93,771 bp · +
trnV-GAC · PQ059317.1 · 100,023–100,094 bp · +
rrn16 · PQ059317.1 · 100,321–101,811 bp · +
trnI-GAU · PQ059317.1 · 102,110–103,130 bp · +
trnA-UGC · PQ059317.1 · 103,195–104,083 bp · +
rrn23 · PQ059317.1 · 104,253–107,065 bp · +
rrn4.5 · PQ059317.1 · 107,164–107,266 bp · +
rrn5 · PQ059317.1 · 107,514–107,634 bp · +
trnR-ACG · PQ059317.1 · 107,869–107,942 bp · +
rpl32 · PQ059317.1 · 112,202–112,378 bp · +
trnL-UAG · PQ059317.1 · 112,825–112,904 bp · +
ccsA · PQ059317.1 · 113,006–113,980 bp · +
trnN-GUU · PQ059317.1 · 128,061–128,132 bp · +
rps7 · PQ059317.1 · 139,016–139,483 bp · +
ndhB · PQ059317.1 · 139,758–141,969 bp · +
trnL-CAA · PQ059317.1 · 142,512–142,592 bp · +
trnI-CAU · PQ059317.1 · 150,080–150,153 bp · +
rpl23 · PQ059317.1 · 150,313–150,594 bp · +
rpl2 · PQ059317.1 · 150,613–152,094 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria litwinowii
ANNOTATED PLASTOME
PQ059317.1
152,194 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38048 76097 114146 152194 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4256 2583 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5156 6313 1158 Locate
trnQ-UUG gene − 7442 7513 72 Locate
psbK gene + 7838 8023 186 Locate
psbI gene + 8402 8512 111 Locate
trnS-GCU gene − 8631 8718 88 Locate
trnG-UCC gene + 9423 10179 757 Locate
trnR-UCU gene + 10354 10425 72 Locate
atpA gene − 10522 12045 1524 Locate
atpF gene − 12127 13354 1228 Locate
atpH gene − 13715 13960 246 Locate
atpI gene − 14948 15691 744 Locate
rps2 gene − 16017 16727 711 Locate
rpoC2 gene − 16942 21147 4206 Locate
rpoC1 gene − 21302 24136 2835 Locate
rpoB gene − 24163 27375 3213 Locate
trnC-GCA gene + 28536 28606 71 Locate
petN gene + 29322 29411 90 Locate
psbM gene − 30468 30572 105 Locate
trnD-GUC gene − 31098 31171 74 Locate
trnY-GUA gene − 31285 31368 84 Locate
trnE-UUC gene − 31428 31500 73 Locate
trnT-GGU gene + 32076 32147 72 Locate
psbD gene + 33453 34514 1062 Locate
psbC gene + 34462 35883 1422 Locate
trnS-UGA gene − 36119 36210 92 Locate
psbZ gene + 36526 36714 189 Locate
trnG-GCC gene + 36991 37061 71 Locate
trnfM-CAU gene − 37211 37284 74 Locate
rps14 gene − 37439 37741 303 Locate
psaB gene − 37870 40074 2205 Locate
psaA gene − 40100 42352 2253 Locate
ycf3 gene − 43048 44969 1922 Locate
trnS-GGA gene + 45858 45944 87 Locate
rps4 gene − 46220 46825 606 Locate
trnT-UGU gene − 47166 47238 73 Locate
trnL-UAA gene + 47923 48483 561 Locate
trnF-GAA gene + 48790 48862 73 Locate
ndhJ gene − 49512 49988 477 Locate
ndhK gene − 50097 50774 678 Locate
ndhC gene − 50828 51190 363 Locate
trnV-UAC gene − 52176 52828 653 Locate
trnM-CAU gene + 53017 53089 73 Locate
atpE gene − 53284 53685 402 Locate
atpB gene − 53682 55178 1497 Locate
rbcL gene + 55930 57393 1464 Locate
accD gene + 58117 59595 1479 Locate
psaI gene + 60300 60410 111 Locate
ycf4 gene + 60865 61419 555 Locate
cemA gene + 62168 62767 600 Locate
petA gene + 62974 63936 963 Locate
psbJ gene − 64941 65063 123 Locate
psbL gene − 65197 65313 117 Locate
psbF gene − 65337 65456 120 Locate
psbE gene − 65471 65722 252 Locate
petL gene + 66598 66693 96 Locate
petG gene + 66868 66981 114 Locate
trnW-CCA gene − 67100 67173 74 Locate
trnP-UGG gene − 67343 67416 74 Locate
psaJ gene + 67625 67822 198 Locate
rpl33 gene + 68301 68501 201 Locate
rps18 gene + 68676 68981 306 Locate
rpl20 gene − 69216 69602 387 Locate
rps12 gene − 70399 70512 114 Locate
clpP gene − 70654 72584 1931 Locate
psbB gene + 73043 74569 1527 Locate
psbT gene + 74760 74867 108 Locate
psbN gene − 74928 75059 132 Locate
psbH gene + 75163 75384 222 Locate
petB gene + 75509 76881 1373 Locate
petD gene + 77064 78269 1206 Locate
rpoA gene − 78624 79424 801 Locate
rps11 gene − 79496 79912 417 Locate
rpl36 gene − 80014 80127 114 Locate
infA gene − 80222 80455 234 Locate
rps8 gene − 80578 80988 411 Locate
rpl14 gene − 81140 81508 369 Locate
rpl16 gene − 81635 82861 1227 Locate
rps3 gene − 83017 83679 663 Locate
rpl22 gene − 83681 84136 456 Locate
rps19 gene − 84196 84474 279 Locate
rpl2 gene − 84529 86010 1482 Locate
rpl23 gene − 86029 86310 282 Locate
trnI-CAU gene − 86470 86543 74 Locate
ycf2 gene + 86632 93432 6801 Locate
ycf15 gene + 93574 93771 198 Locate
trnL-CAA gene − 94031 94111 81 Locate
ndhB gene − 94654 96865 2212 Locate
rps7 gene − 97140 97607 468 Locate
rps12 gene − 97661 98451 791 Locate
trnV-GAC gene + 100023 100094 72 Locate
rrn16 gene + 100321 101811 1491 Locate
trnI-GAU gene + 102110 103130 1021 Locate
trnA-UGC gene + 103195 104083 889 Locate
rrn23 gene + 104253 107065 2813 Locate
rrn4.5 gene + 107164 107266 103 Locate
rrn5 gene + 107514 107634 121 Locate
trnR-ACG gene + 107869 107942 74 Locate
trnN-GUU gene − 108491 108562 72 Locate
ndhF gene − 109619 111874 2256 Locate
rpl32 gene + 112202 112378 177 Locate
trnL-UAG gene + 112825 112904 80 Locate
ccsA gene + 113006 113980 975 Locate
ndhD gene − 114219 115748 1530 Locate
psaC gene − 115849 116094 246 Locate
ndhE gene − 116343 116648 306 Locate
ndhG gene − 116865 117395 531 Locate
ndhI gene − 117762 118262 501 Locate
ndhA gene − 118343 120464 2122 Locate
ndhH gene − 120466 121647 1182 Locate
rps15 gene − 121744 122016 273 Locate
ycf1 gene − 122212 127842 5631 Locate
trnN-GUU gene + 128061 128132 72 Locate
trnR-ACG gene − 128681 128754 74 Locate
rrn5 gene − 128989 129109 121 Locate
rrn4.5 gene − 129357 129459 103 Locate
rrn23 gene − 129558 132370 2813 Locate
trnA-UGC gene − 132540 133428 889 Locate
trnI-GAU gene − 133493 134513 1021 Locate
ycf68 gene − 134065 134358 294 Locate
rrn16 gene − 134812 136302 1491 Locate
trnV-GAC gene − 136529 136600 72 Locate
rps12 gene + 138172 138962 791 Locate
rps7 gene + 139016 139483 468 Locate
ndhB gene + 139758 141969 2212 Locate
trnL-CAA gene + 142512 142592 81 Locate
ycf15 gene − 142852 143049 198 Locate
ycf2 gene − 143191 149991 6801 Locate
trnI-CAU gene + 150080 150153 74 Locate
rpl23 gene + 150313 150594 282 Locate
rpl2 gene + 150613 152094 1482 Locate
Status Available
Accession PQ059317.1
Length 152,194 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources