Scutellaria macrosiphon chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059318.1 · 3–76 bp · −
psbA · PQ059318.1 · 365–1,423 bp · −
trnK-UUU · PQ059318.1 · 1,665–4,253 bp · −
matK · PQ059318.1 · 1,960–3,495 bp · −
rps16 · PQ059318.1 · 5,105–6,295 bp · −
trnQ-UUG · PQ059318.1 · 7,315–7,386 bp · −
trnS-GCU · PQ059318.1 · 8,523–8,610 bp · −
atpA · PQ059318.1 · 10,392–11,915 bp · −
atpF · PQ059318.1 · 11,998–13,225 bp · −
atpH · PQ059318.1 · 13,581–13,826 bp · −
atpI · PQ059318.1 · 14,822–15,565 bp · −
rps2 · PQ059318.1 · 15,913–16,623 bp · −
rpoC2 · PQ059318.1 · 16,840–21,045 bp · −
rpoC1 · PQ059318.1 · 21,200–24,019 bp · −
rpoB · PQ059318.1 · 24,046–27,258 bp · −
psbM · PQ059318.1 · 30,281–30,385 bp · −
trnD-GUC · PQ059318.1 · 30,912–30,985 bp · −
trnY-GUA · PQ059318.1 · 31,099–31,182 bp · −
trnE-UUC · PQ059318.1 · 31,242–31,314 bp · −
trnS-UGA · PQ059318.1 · 35,934–36,025 bp · −
trnfM-CAU · PQ059318.1 · 37,029–37,102 bp · −
rps14 · PQ059318.1 · 37,252–37,554 bp · −
psaB · PQ059318.1 · 37,682–39,886 bp · −
psaA · PQ059318.1 · 39,912–42,164 bp · −
ycf3 · PQ059318.1 · 42,833–44,757 bp · −
rps4 · PQ059318.1 · 46,009–46,614 bp · −
trnT-UGU · PQ059318.1 · 46,944–47,016 bp · −
ndhJ · PQ059318.1 · 49,290–49,766 bp · −
ndhK · PQ059318.1 · 49,874–50,551 bp · −
ndhC · PQ059318.1 · 50,604–50,966 bp · −
trnV-UAC · PQ059318.1 · 51,822–52,474 bp · −
atpE · PQ059318.1 · 52,943–53,344 bp · −
atpB · PQ059318.1 · 53,341–54,828 bp · −
psbJ · PQ059318.1 · 64,413–64,535 bp · −
psbL · PQ059318.1 · 64,669–64,890 bp · −
psbF · PQ059318.1 · 64,809–64,928 bp · −
psbE · PQ059318.1 · 64,943–65,194 bp · −
trnW-CCA · PQ059318.1 · 66,606–66,679 bp · −
trnP-UGG · PQ059318.1 · 66,849–66,922 bp · −
rpl20 · PQ059318.1 · 68,721–69,107 bp · −
rps12 · PQ059318.1 · 69,907–70,020 bp · −
rps12 · PQ059318.1 · 97,237–98,027 bp · −
clpP · PQ059318.1 · 70,163–72,096 bp · −
psbN · PQ059318.1 · 74,458–74,589 bp · −
rpoA · PQ059318.1 · 78,171–78,971 bp · −
rps11 · PQ059318.1 · 79,043–79,459 bp · −
rpl36 · PQ059318.1 · 79,561–79,674 bp · −
infA · PQ059318.1 · 79,770–80,003 bp · −
rps8 · PQ059318.1 · 80,123–80,533 bp · −
rpl14 · PQ059318.1 · 80,704–81,072 bp · −
rpl16 · PQ059318.1 · 81,199–82,432 bp · −
rps3 · PQ059318.1 · 82,587–83,249 bp · −
rpl22 · PQ059318.1 · 83,251–83,706 bp · −
rps19 · PQ059318.1 · 83,766–84,044 bp · −
rpl2 · PQ059318.1 · 84,099–85,581 bp · −
rpl23 · PQ059318.1 · 85,600–85,881 bp · −
trnI-CAU · PQ059318.1 · 86,041–86,114 bp · −
trnL-CAA · PQ059318.1 · 93,607–93,687 bp · −
ndhB · PQ059318.1 · 94,230–96,387 bp · −
rps7 · PQ059318.1 · 96,716–97,183 bp · −
trnN-GUU · PQ059318.1 · 108,066–108,137 bp · −
ndhF · PQ059318.1 · 109,214–111,454 bp · −
ndhD · PQ059318.1 · 113,979–115,502 bp · −
psaC · PQ059318.1 · 115,601–115,846 bp · −
ndhE · PQ059318.1 · 116,103–116,408 bp · −
ndhG · PQ059318.1 · 116,639–117,169 bp · −
ndhI · PQ059318.1 · 117,534–118,034 bp · −
ndhA · PQ059318.1 · 118,128–120,227 bp · −
ndhH · PQ059318.1 · 120,229–121,440 bp · −
rps15 · PQ059318.1 · 121,513–121,785 bp · −
ycf1 · PQ059318.1 · 122,052–127,697 bp · −
trnR-ACG · PQ059318.1 · 128,534–128,607 bp · −
rrn5 · PQ059318.1 · 128,842–128,962 bp · −
rrn4.5 · PQ059318.1 · 129,210–129,312 bp · −
rrn23 · PQ059318.1 · 129,411–132,223 bp · −
trnA-UGC · PQ059318.1 · 132,393–133,275 bp · −
trnI-GAU · PQ059318.1 · 133,340–134,360 bp · −
ycf68 · PQ059318.1 · 133,966–134,205 bp · −
rrn16 · PQ059318.1 · 134,659–136,149 bp · −
trnV-GAC · PQ059318.1 · 136,377–136,448 bp · −
ycf15 · PQ059318.1 · 142,702–142,899 bp · −
ycf2 · PQ059318.1 · 143,041–149,850 bp · −
psbK · PQ059318.1 · 7,711–7,896 bp · +
psbI · PQ059318.1 · 8,294–8,404 bp · +
trnG-UCC · PQ059318.1 · 9,293–10,053 bp · +
trnR-UCU · PQ059318.1 · 10,224–10,295 bp · +
trnC-GCA · PQ059318.1 · 28,417–28,487 bp · +
petN · PQ059318.1 · 29,199–29,288 bp · +
trnT-GGU · PQ059318.1 · 31,890–31,961 bp · +
psbD · PQ059318.1 · 33,269–34,330 bp · +
psbC · PQ059318.1 · 34,278–35,699 bp · +
psbZ · PQ059318.1 · 36,345–36,533 bp · +
trnG-GCC · PQ059318.1 · 36,805–36,875 bp · +
trnS-GGA · PQ059318.1 · 45,637–45,723 bp · +
trnL-UAA · PQ059318.1 · 47,702–48,262 bp · +
trnF-GAA · PQ059318.1 · 48,569–48,641 bp · +
trnM-CAU · PQ059318.1 · 52,655–52,727 bp · +
rbcL · PQ059318.1 · 55,569–57,032 bp · +
accD · PQ059318.1 · 57,759–59,225 bp · +
psaI · PQ059318.1 · 59,783–59,893 bp · +
ycf4 · PQ059318.1 · 60,327–60,881 bp · +
cemA · PQ059318.1 · 61,619–62,218 bp · +
petA · PQ059318.1 · 62,425–63,387 bp · +
petL · PQ059318.1 · 66,103–66,198 bp · +
petG · PQ059318.1 · 66,374–66,487 bp · +
psaJ · PQ059318.1 · 67,195–67,329 bp · +
rpl33 · PQ059318.1 · 67,803–68,003 bp · +
rps18 · PQ059318.1 · 68,178–68,483 bp · +
rps12 · PQ059318.1 · 138,026–138,816 bp · +
psbB · PQ059318.1 · 72,565–74,091 bp · +
psbT · PQ059318.1 · 74,283–74,384 bp · +
psbH · PQ059318.1 · 74,693–74,914 bp · +
petB · PQ059318.1 · 75,039–76,406 bp · +
petD · PQ059318.1 · 76,595–77,796 bp · +
ycf2 · PQ059318.1 · 86,203–93,012 bp · +
ycf15 · PQ059318.1 · 93,154–93,351 bp · +
trnV-GAC · PQ059318.1 · 99,605–99,676 bp · +
rrn16 · PQ059318.1 · 99,904–101,394 bp · +
trnI-GAU · PQ059318.1 · 101,693–102,713 bp · +
trnA-UGC · PQ059318.1 · 102,778–103,660 bp · +
rrn23 · PQ059318.1 · 103,830–106,642 bp · +
rrn4.5 · PQ059318.1 · 106,741–106,843 bp · +
rrn5 · PQ059318.1 · 107,091–107,211 bp · +
trnR-ACG · PQ059318.1 · 107,446–107,519 bp · +
rpl32 · PQ059318.1 · 111,975–112,151 bp · +
trnL-UAG · PQ059318.1 · 112,596–112,675 bp · +
ccsA · PQ059318.1 · 112,772–113,746 bp · +
trnN-GUU · PQ059318.1 · 127,916–127,987 bp · +
rps7 · PQ059318.1 · 138,870–139,337 bp · +
ndhB · PQ059318.1 · 139,666–141,823 bp · +
trnL-CAA · PQ059318.1 · 142,366–142,446 bp · +
trnI-CAU · PQ059318.1 · 149,939–150,012 bp · +
rpl23 · PQ059318.1 · 150,172–150,453 bp · +
rpl2 · PQ059318.1 · 150,472–151,954 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria macrosiphon
ANNOTATED PLASTOME
PQ059318.1
152,049 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38012 76024 114037 152049 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5105 6295 1191 Locate
trnQ-UUG gene − 7315 7386 72 Locate
psbK gene + 7711 7896 186 Locate
psbI gene + 8294 8404 111 Locate
trnS-GCU gene − 8523 8610 88 Locate
trnG-UCC gene + 9293 10053 761 Locate
trnR-UCU gene + 10224 10295 72 Locate
atpA gene − 10392 11915 1524 Locate
atpF gene − 11998 13225 1228 Locate
atpH gene − 13581 13826 246 Locate
atpI gene − 14822 15565 744 Locate
rps2 gene − 15913 16623 711 Locate
rpoC2 gene − 16840 21045 4206 Locate
rpoC1 gene − 21200 24019 2820 Locate
rpoB gene − 24046 27258 3213 Locate
trnC-GCA gene + 28417 28487 71 Locate
petN gene + 29199 29288 90 Locate
psbM gene − 30281 30385 105 Locate
trnD-GUC gene − 30912 30985 74 Locate
trnY-GUA gene − 31099 31182 84 Locate
trnE-UUC gene − 31242 31314 73 Locate
trnT-GGU gene + 31890 31961 72 Locate
psbD gene + 33269 34330 1062 Locate
psbC gene + 34278 35699 1422 Locate
trnS-UGA gene − 35934 36025 92 Locate
psbZ gene + 36345 36533 189 Locate
trnG-GCC gene + 36805 36875 71 Locate
trnfM-CAU gene − 37029 37102 74 Locate
rps14 gene − 37252 37554 303 Locate
psaB gene − 37682 39886 2205 Locate
psaA gene − 39912 42164 2253 Locate
ycf3 gene − 42833 44757 1925 Locate
trnS-GGA gene + 45637 45723 87 Locate
rps4 gene − 46009 46614 606 Locate
trnT-UGU gene − 46944 47016 73 Locate
trnL-UAA gene + 47702 48262 561 Locate
trnF-GAA gene + 48569 48641 73 Locate
ndhJ gene − 49290 49766 477 Locate
ndhK gene − 49874 50551 678 Locate
ndhC gene − 50604 50966 363 Locate
trnV-UAC gene − 51822 52474 653 Locate
trnM-CAU gene + 52655 52727 73 Locate
atpE gene − 52943 53344 402 Locate
atpB gene − 53341 54828 1488 Locate
rbcL gene + 55569 57032 1464 Locate
accD gene + 57759 59225 1467 Locate
psaI gene + 59783 59893 111 Locate
ycf4 gene + 60327 60881 555 Locate
cemA gene + 61619 62218 600 Locate
petA gene + 62425 63387 963 Locate
psbJ gene − 64413 64535 123 Locate
psbL gene − 64669 64890 222 Locate
psbF gene − 64809 64928 120 Locate
psbE gene − 64943 65194 252 Locate
petL gene + 66103 66198 96 Locate
petG gene + 66374 66487 114 Locate
trnW-CCA gene − 66606 66679 74 Locate
trnP-UGG gene − 66849 66922 74 Locate
psaJ gene + 67195 67329 135 Locate
rpl33 gene + 67803 68003 201 Locate
rps18 gene + 68178 68483 306 Locate
rpl20 gene − 68721 69107 387 Locate
rps12 gene − 69907 70020 114 Locate
clpP gene − 70163 72096 1934 Locate
psbB gene + 72565 74091 1527 Locate
psbT gene + 74283 74384 102 Locate
psbN gene − 74458 74589 132 Locate
psbH gene + 74693 74914 222 Locate
petB gene + 75039 76406 1368 Locate
petD gene + 76595 77796 1202 Locate
rpoA gene − 78171 78971 801 Locate
rps11 gene − 79043 79459 417 Locate
rpl36 gene − 79561 79674 114 Locate
infA gene − 79770 80003 234 Locate
rps8 gene − 80123 80533 411 Locate
rpl14 gene − 80704 81072 369 Locate
rpl16 gene − 81199 82432 1234 Locate
rps3 gene − 82587 83249 663 Locate
rpl22 gene − 83251 83706 456 Locate
rps19 gene − 83766 84044 279 Locate
rpl2 gene − 84099 85581 1483 Locate
rpl23 gene − 85600 85881 282 Locate
trnI-CAU gene − 86041 86114 74 Locate
ycf2 gene + 86203 93012 6810 Locate
ycf15 gene + 93154 93351 198 Locate
trnL-CAA gene − 93607 93687 81 Locate
ndhB gene − 94230 96387 2158 Locate
rps7 gene − 96716 97183 468 Locate
rps12 gene − 97237 98027 791 Locate
trnV-GAC gene + 99605 99676 72 Locate
rrn16 gene + 99904 101394 1491 Locate
trnI-GAU gene + 101693 102713 1021 Locate
trnA-UGC gene + 102778 103660 883 Locate
rrn23 gene + 103830 106642 2813 Locate
rrn4.5 gene + 106741 106843 103 Locate
rrn5 gene + 107091 107211 121 Locate
trnR-ACG gene + 107446 107519 74 Locate
trnN-GUU gene − 108066 108137 72 Locate
ndhF gene − 109214 111454 2241 Locate
rpl32 gene + 111975 112151 177 Locate
trnL-UAG gene + 112596 112675 80 Locate
ccsA gene + 112772 113746 975 Locate
ndhD gene − 113979 115502 1524 Locate
psaC gene − 115601 115846 246 Locate
ndhE gene − 116103 116408 306 Locate
ndhG gene − 116639 117169 531 Locate
ndhI gene − 117534 118034 501 Locate
ndhA gene − 118128 120227 2100 Locate
ndhH gene − 120229 121440 1212 Locate
rps15 gene − 121513 121785 273 Locate
ycf1 gene − 122052 127697 5646 Locate
trnN-GUU gene + 127916 127987 72 Locate
trnR-ACG gene − 128534 128607 74 Locate
rrn5 gene − 128842 128962 121 Locate
rrn4.5 gene − 129210 129312 103 Locate
rrn23 gene − 129411 132223 2813 Locate
trnA-UGC gene − 132393 133275 883 Locate
trnI-GAU gene − 133340 134360 1021 Locate
ycf68 gene − 133966 134205 240 Locate
rrn16 gene − 134659 136149 1491 Locate
trnV-GAC gene − 136377 136448 72 Locate
rps12 gene + 138026 138816 791 Locate
rps7 gene + 138870 139337 468 Locate
ndhB gene + 139666 141823 2158 Locate
trnL-CAA gene + 142366 142446 81 Locate
ycf15 gene − 142702 142899 198 Locate
ycf2 gene − 143041 149850 6810 Locate
trnI-CAU gene + 149939 150012 74 Locate
rpl23 gene + 150172 150453 282 Locate
rpl2 gene + 150472 151954 1483 Locate
Status Available
Accession PQ059318.1
Length 152,049 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources