Scutellaria megalaspis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059231.1 · 2–75 bp · −
psbA · PQ059231.1 · 362–1,420 bp · −
trnK-UUU · PQ059231.1 · 1,662–4,255 bp · −
matK · PQ059231.1 · 1,951–3,495 bp · −
rps16 · PQ059231.1 · 5,162–6,329 bp · −
trnQ-UUG · PQ059231.1 · 7,466–7,537 bp · −
trnS-GCU · PQ059231.1 · 8,654–8,741 bp · −
atpA · PQ059231.1 · 10,524–12,047 bp · −
atpF · PQ059231.1 · 12,131–13,359 bp · −
atpH · PQ059231.1 · 13,725–13,970 bp · −
atpI · PQ059231.1 · 14,964–15,707 bp · −
rps2 · PQ059231.1 · 16,055–16,765 bp · −
rpoC2 · PQ059231.1 · 16,983–21,173 bp · −
rpoC1 · PQ059231.1 · 21,328–24,146 bp · −
rpoB · PQ059231.1 · 24,173–27,385 bp · −
psbM · PQ059231.1 · 30,464–30,568 bp · −
trnD-GUC · PQ059231.1 · 31,100–31,173 bp · −
trnY-GUA · PQ059231.1 · 31,287–31,370 bp · −
trnE-UUC · PQ059231.1 · 31,430–31,502 bp · −
trnS-UGA · PQ059231.1 · 36,127–36,218 bp · −
trnfM-CAU · PQ059231.1 · 37,220–37,293 bp · −
rps14 · PQ059231.1 · 37,443–37,745 bp · −
psaB · PQ059231.1 · 37,878–40,082 bp · −
psaA · PQ059231.1 · 40,108–42,360 bp · −
ycf3 · PQ059231.1 · 43,061–44,981 bp · −
rps4 · PQ059231.1 · 46,225–46,830 bp · −
trnT-UGU · PQ059231.1 · 47,172–47,244 bp · −
ndhJ · PQ059231.1 · 49,506–49,982 bp · −
ndhK · PQ059231.1 · 50,087–50,764 bp · −
ndhC · PQ059231.1 · 50,817–51,179 bp · −
trnV-UAC · PQ059231.1 · 52,168–52,826 bp · −
atpE · PQ059231.1 · 53,288–53,689 bp · −
atpB · PQ059231.1 · 53,686–55,182 bp · −
psbJ · PQ059231.1 · 64,348–64,470 bp · −
psbL · PQ059231.1 · 64,604–64,720 bp · −
psbF · PQ059231.1 · 64,744–64,863 bp · −
psbE · PQ059231.1 · 64,878–65,129 bp · −
trnW-CCA · PQ059231.1 · 66,545–66,618 bp · −
trnP-UGG · PQ059231.1 · 66,788–66,861 bp · −
rpl20 · PQ059231.1 · 68,663–69,049 bp · −
rps12 · PQ059231.1 · 69,845–69,958 bp · −
rps12 · PQ059231.1 · 97,146–97,936 bp · −
clpP · PQ059231.1 · 70,100–72,037 bp · −
psbN · PQ059231.1 · 74,363–74,494 bp · −
rpoA · PQ059231.1 · 77,875–78,888 bp · −
rps11 · PQ059231.1 · 78,960–79,376 bp · −
rpl36 · PQ059231.1 · 79,478–79,591 bp · −
infA · PQ059231.1 · 79,687–79,920 bp · −
rps8 · PQ059231.1 · 80,043–80,453 bp · −
rpl14 · PQ059231.1 · 80,610–80,978 bp · −
rpl16 · PQ059231.1 · 81,105–82,335 bp · −
rps3 · PQ059231.1 · 82,490–83,152 bp · −
rpl22 · PQ059231.1 · 83,154–83,609 bp · −
rps19 · PQ059231.1 · 83,669–83,947 bp · −
rpl2 · PQ059231.1 · 84,003–85,485 bp · −
rpl23 · PQ059231.1 · 85,504–85,785 bp · −
trnI-CAU · PQ059231.1 · 85,945–86,018 bp · −
trnL-CAA · PQ059231.1 · 93,516–93,596 bp · −
ndhB · PQ059231.1 · 94,139–96,350 bp · −
rps7 · PQ059231.1 · 96,625–97,092 bp · −
trnN-GUU · PQ059231.1 · 107,974–108,045 bp · −
ndhF · PQ059231.1 · 109,122–111,362 bp · −
ndhD · PQ059231.1 · 113,861–115,363 bp · −
psaC · PQ059231.1 · 115,497–115,742 bp · −
ndhE · PQ059231.1 · 115,998–116,303 bp · −
ndhG · PQ059231.1 · 116,527–117,057 bp · −
ndhI · PQ059231.1 · 117,406–117,906 bp · −
ndhA · PQ059231.1 · 117,987–120,090 bp · −
ndhH · PQ059231.1 · 120,092–121,303 bp · −
rps15 · PQ059231.1 · 121,370–121,642 bp · −
ycf1 · PQ059231.1 · 121,911–127,586 bp · −
trnR-ACG · PQ059231.1 · 128,432–128,505 bp · −
rrn5 · PQ059231.1 · 128,740–128,860 bp · −
rrn4.5 · PQ059231.1 · 129,108–129,210 bp · −
rrn23 · PQ059231.1 · 129,309–132,120 bp · −
trnA-UGC · PQ059231.1 · 132,290–133,175 bp · −
trnI-GAU · PQ059231.1 · 133,240–134,258 bp · −
ycf68 · PQ059231.1 · 133,810–134,103 bp · −
rrn16 · PQ059231.1 · 134,557–136,047 bp · −
trnV-GAC · PQ059231.1 · 136,270–136,341 bp · −
ycf15 · PQ059231.1 · 142,595–142,792 bp · −
ycf2 · PQ059231.1 · 142,934–149,743 bp · −
psbK · PQ059231.1 · 7,862–8,047 bp · +
psbI · PQ059231.1 · 8,445–8,555 bp · +
trnG-UCC · PQ059231.1 · 9,436–10,190 bp · +
trnR-UCU · PQ059231.1 · 10,356–10,427 bp · +
trnC-GCA · PQ059231.1 · 28,562–28,632 bp · +
petN · PQ059231.1 · 29,368–29,457 bp · +
trnT-GGU · PQ059231.1 · 32,074–32,145 bp · +
psbD · PQ059231.1 · 33,462–34,523 bp · +
psbC · PQ059231.1 · 34,471–35,892 bp · +
psbZ · PQ059231.1 · 36,538–36,726 bp · +
trnG-GCC · PQ059231.1 · 36,999–37,069 bp · +
trnS-GGA · PQ059231.1 · 45,855–45,941 bp · +
trnL-UAA · PQ059231.1 · 47,912–48,478 bp · +
trnF-GAA · PQ059231.1 · 48,784–48,856 bp · +
trnM-CAU · PQ059231.1 · 53,007–53,079 bp · +
rbcL · PQ059231.1 · 55,930–57,393 bp · +
accD · PQ059231.1 · 58,119–59,609 bp · +
psaI · PQ059231.1 · 59,847–59,957 bp · +
ycf4 · PQ059231.1 · 60,391–60,945 bp · +
cemA · PQ059231.1 · 61,559–62,158 bp · +
petA · PQ059231.1 · 62,365–63,327 bp · +
petL · PQ059231.1 · 66,052–66,147 bp · +
petG · PQ059231.1 · 66,323–66,436 bp · +
psaJ · PQ059231.1 · 67,134–67,268 bp · +
rpl33 · PQ059231.1 · 67,742–67,942 bp · +
rps18 · PQ059231.1 · 68,117–68,422 bp · +
rps12 · PQ059231.1 · 137,914–138,704 bp · +
psbB · PQ059231.1 · 72,491–74,017 bp · +
psbT · PQ059231.1 · 74,195–74,302 bp · +
psbH · PQ059231.1 · 74,598–74,819 bp · +
petB · PQ059231.1 · 74,944–76,312 bp · +
petD · PQ059231.1 · 76,501–77,712 bp · +
ycf2 · PQ059231.1 · 86,107–92,916 bp · +
ycf15 · PQ059231.1 · 93,058–93,255 bp · +
trnV-GAC · PQ059231.1 · 99,509–99,580 bp · +
rrn16 · PQ059231.1 · 99,803–101,293 bp · +
trnI-GAU · PQ059231.1 · 101,592–102,610 bp · +
trnA-UGC · PQ059231.1 · 102,675–103,560 bp · +
rrn23 · PQ059231.1 · 103,730–106,541 bp · +
rrn4.5 · PQ059231.1 · 106,640–106,742 bp · +
rrn5 · PQ059231.1 · 106,990–107,110 bp · +
trnR-ACG · PQ059231.1 · 107,345–107,418 bp · +
rpl32 · PQ059231.1 · 111,876–112,052 bp · +
trnL-UAG · PQ059231.1 · 112,487–112,566 bp · +
ccsA · PQ059231.1 · 112,649–113,623 bp · +
trnN-GUU · PQ059231.1 · 127,805–127,876 bp · +
rps7 · PQ059231.1 · 138,758–139,225 bp · +
ndhB · PQ059231.1 · 139,500–141,711 bp · +
trnL-CAA · PQ059231.1 · 142,254–142,334 bp · +
trnI-CAU · PQ059231.1 · 149,832–149,905 bp · +
rpl23 · PQ059231.1 · 150,065–150,346 bp · +
rpl2 · PQ059231.1 · 150,365–151,847 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria megalaspis
ANNOTATED PLASTOME
PQ059231.1
151,945 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37986 75972 113959 151945 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 362 1420 1059 Locate
trnK-UUU gene − 1662 4255 2594 Locate
matK gene − 1951 3495 1545 Locate
rps16 gene − 5162 6329 1168 Locate
trnQ-UUG gene − 7466 7537 72 Locate
psbK gene + 7862 8047 186 Locate
psbI gene + 8445 8555 111 Locate
trnS-GCU gene − 8654 8741 88 Locate
trnG-UCC gene + 9436 10190 755 Locate
trnR-UCU gene + 10356 10427 72 Locate
atpA gene − 10524 12047 1524 Locate
atpF gene − 12131 13359 1229 Locate
atpH gene − 13725 13970 246 Locate
atpI gene − 14964 15707 744 Locate
rps2 gene − 16055 16765 711 Locate
rpoC2 gene − 16983 21173 4191 Locate
rpoC1 gene − 21328 24146 2819 Locate
rpoB gene − 24173 27385 3213 Locate
trnC-GCA gene + 28562 28632 71 Locate
petN gene + 29368 29457 90 Locate
psbM gene − 30464 30568 105 Locate
trnD-GUC gene − 31100 31173 74 Locate
trnY-GUA gene − 31287 31370 84 Locate
trnE-UUC gene − 31430 31502 73 Locate
trnT-GGU gene + 32074 32145 72 Locate
psbD gene + 33462 34523 1062 Locate
psbC gene + 34471 35892 1422 Locate
trnS-UGA gene − 36127 36218 92 Locate
psbZ gene + 36538 36726 189 Locate
trnG-GCC gene + 36999 37069 71 Locate
trnfM-CAU gene − 37220 37293 74 Locate
rps14 gene − 37443 37745 303 Locate
psaB gene − 37878 40082 2205 Locate
psaA gene − 40108 42360 2253 Locate
ycf3 gene − 43061 44981 1921 Locate
trnS-GGA gene + 45855 45941 87 Locate
rps4 gene − 46225 46830 606 Locate
trnT-UGU gene − 47172 47244 73 Locate
trnL-UAA gene + 47912 48478 567 Locate
trnF-GAA gene + 48784 48856 73 Locate
ndhJ gene − 49506 49982 477 Locate
ndhK gene − 50087 50764 678 Locate
ndhC gene − 50817 51179 363 Locate
trnV-UAC gene − 52168 52826 659 Locate
trnM-CAU gene + 53007 53079 73 Locate
atpE gene − 53288 53689 402 Locate
atpB gene − 53686 55182 1497 Locate
rbcL gene + 55930 57393 1464 Locate
accD gene + 58119 59609 1491 Locate
psaI gene + 59847 59957 111 Locate
ycf4 gene + 60391 60945 555 Locate
cemA gene + 61559 62158 600 Locate
petA gene + 62365 63327 963 Locate
psbJ gene − 64348 64470 123 Locate
psbL gene − 64604 64720 117 Locate
psbF gene − 64744 64863 120 Locate
psbE gene − 64878 65129 252 Locate
petL gene + 66052 66147 96 Locate
petG gene + 66323 66436 114 Locate
trnW-CCA gene − 66545 66618 74 Locate
trnP-UGG gene − 66788 66861 74 Locate
psaJ gene + 67134 67268 135 Locate
rpl33 gene + 67742 67942 201 Locate
rps18 gene + 68117 68422 306 Locate
rpl20 gene − 68663 69049 387 Locate
rps12 gene − 69845 69958 114 Locate
clpP gene − 70100 72037 1938 Locate
psbB gene + 72491 74017 1527 Locate
psbT gene + 74195 74302 108 Locate
psbN gene − 74363 74494 132 Locate
psbH gene + 74598 74819 222 Locate
petB gene + 74944 76312 1369 Locate
petD gene + 76501 77712 1212 Locate
rpoA gene − 77875 78888 1014 Locate
rps11 gene − 78960 79376 417 Locate
rpl36 gene − 79478 79591 114 Locate
infA gene − 79687 79920 234 Locate
rps8 gene − 80043 80453 411 Locate
rpl14 gene − 80610 80978 369 Locate
rpl16 gene − 81105 82335 1231 Locate
rps3 gene − 82490 83152 663 Locate
rpl22 gene − 83154 83609 456 Locate
rps19 gene − 83669 83947 279 Locate
rpl2 gene − 84003 85485 1483 Locate
rpl23 gene − 85504 85785 282 Locate
trnI-CAU gene − 85945 86018 74 Locate
ycf2 gene + 86107 92916 6810 Locate
ycf15 gene + 93058 93255 198 Locate
trnL-CAA gene − 93516 93596 81 Locate
ndhB gene − 94139 96350 2212 Locate
rps7 gene − 96625 97092 468 Locate
rps12 gene − 97146 97936 791 Locate
trnV-GAC gene + 99509 99580 72 Locate
rrn16 gene + 99803 101293 1491 Locate
trnI-GAU gene + 101592 102610 1019 Locate
trnA-UGC gene + 102675 103560 886 Locate
rrn23 gene + 103730 106541 2812 Locate
rrn4.5 gene + 106640 106742 103 Locate
rrn5 gene + 106990 107110 121 Locate
trnR-ACG gene + 107345 107418 74 Locate
trnN-GUU gene − 107974 108045 72 Locate
ndhF gene − 109122 111362 2241 Locate
rpl32 gene + 111876 112052 177 Locate
trnL-UAG gene + 112487 112566 80 Locate
ccsA gene + 112649 113623 975 Locate
ndhD gene − 113861 115363 1503 Locate
psaC gene − 115497 115742 246 Locate
ndhE gene − 115998 116303 306 Locate
ndhG gene − 116527 117057 531 Locate
ndhI gene − 117406 117906 501 Locate
ndhA gene − 117987 120090 2104 Locate
ndhH gene − 120092 121303 1212 Locate
rps15 gene − 121370 121642 273 Locate
ycf1 gene − 121911 127586 5676 Locate
trnN-GUU gene + 127805 127876 72 Locate
trnR-ACG gene − 128432 128505 74 Locate
rrn5 gene − 128740 128860 121 Locate
rrn4.5 gene − 129108 129210 103 Locate
rrn23 gene − 129309 132120 2812 Locate
trnA-UGC gene − 132290 133175 886 Locate
trnI-GAU gene − 133240 134258 1019 Locate
ycf68 gene − 133810 134103 294 Locate
rrn16 gene − 134557 136047 1491 Locate
trnV-GAC gene − 136270 136341 72 Locate
rps12 gene + 137914 138704 791 Locate
rps7 gene + 138758 139225 468 Locate
ndhB gene + 139500 141711 2212 Locate
trnL-CAA gene + 142254 142334 81 Locate
ycf15 gene − 142595 142792 198 Locate
ycf2 gene − 142934 149743 6810 Locate
trnI-CAU gene + 149832 149905 74 Locate
rpl23 gene + 150065 150346 282 Locate
rpl2 gene + 150365 151847 1483 Locate
Status Available
Accession PQ059231.1
Length 151,945 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources