Scutellaria mesostegia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075922.1 · 4–77 bp · −
psbA · PQ075922.1 · 374–1,432 bp · −
trnK-UUU · PQ075922.1 · 1,674–4,255 bp · −
matK · PQ075922.1 · 1,964–3,490 bp · −
rps16 · PQ075922.1 · 5,157–6,317 bp · −
trnQ-UUG · PQ075922.1 · 7,061–7,132 bp · −
trnS-GCU · PQ075922.1 · 8,260–8,347 bp · −
atpA · PQ075922.1 · 10,140–11,663 bp · −
atpF · PQ075922.1 · 11,745–12,973 bp · −
atpH · PQ075922.1 · 13,337–13,582 bp · −
atpI · PQ075922.1 · 14,570–15,313 bp · −
rps2 · PQ075922.1 · 15,659–16,369 bp · −
rpoC2 · PQ075922.1 · 16,584–20,789 bp · −
rpoC1 · PQ075922.1 · 20,944–23,780 bp · −
rpoB · PQ075922.1 · 23,807–27,019 bp · −
psbM · PQ075922.1 · 30,137–30,241 bp · −
trnD-GUC · PQ075922.1 · 30,767–30,840 bp · −
trnY-GUA · PQ075922.1 · 30,954–31,037 bp · −
trnE-UUC · PQ075922.1 · 31,097–31,169 bp · −
trnS-UGA · PQ075922.1 · 35,788–35,879 bp · −
trnfM-CAU · PQ075922.1 · 36,879–36,952 bp · −
rps14 · PQ075922.1 · 37,107–37,409 bp · −
psaB · PQ075922.1 · 37,539–39,743 bp · −
psaA · PQ075922.1 · 39,769–42,021 bp · −
ycf3 · PQ075922.1 · 42,714–44,636 bp · −
rps4 · PQ075922.1 · 45,881–46,486 bp · −
trnT-UGU · PQ075922.1 · 46,826–46,898 bp · −
ndhJ · PQ075922.1 · 49,154–49,630 bp · −
ndhK · PQ075922.1 · 49,739–50,500 bp · −
ndhC · PQ075922.1 · 50,470–50,832 bp · −
trnV-UAC · PQ075922.1 · 51,818–52,470 bp · −
atpE · PQ075922.1 · 52,925–53,326 bp · −
atpB · PQ075922.1 · 53,323–54,819 bp · −
psbJ · PQ075922.1 · 64,555–64,677 bp · −
psbL · PQ075922.1 · 64,811–65,032 bp · −
psbF · PQ075922.1 · 64,951–65,070 bp · −
psbE · PQ075922.1 · 65,085–65,336 bp · −
trnW-CCA · PQ075922.1 · 66,716–66,789 bp · −
trnP-UGG · PQ075922.1 · 66,959–67,032 bp · −
rpl20 · PQ075922.1 · 68,831–69,217 bp · −
rps12 · PQ075922.1 · 70,000–70,125 bp · −
rps12 · PQ075922.1 · 97,273–98,063 bp · −
clpP · PQ075922.1 · 70,267–72,195 bp · −
psbN · PQ075922.1 · 74,533–74,664 bp · −
rpoA · PQ075922.1 · 78,226–79,026 bp · −
rps11 · PQ075922.1 · 79,098–79,514 bp · −
rpl36 · PQ075922.1 · 79,616–79,729 bp · −
infA · PQ075922.1 · 79,824–80,057 bp · −
rps8 · PQ075922.1 · 80,181–80,591 bp · −
rpl14 · PQ075922.1 · 80,745–81,113 bp · −
rpl16 · PQ075922.1 · 81,240–82,473 bp · −
rps3 · PQ075922.1 · 82,629–83,291 bp · −
rpl22 · PQ075922.1 · 83,293–83,748 bp · −
rps19 · PQ075922.1 · 83,808–84,086 bp · −
rpl2 · PQ075922.1 · 84,141–85,622 bp · −
rpl23 · PQ075922.1 · 85,641–85,922 bp · −
trnI-CAU · PQ075922.1 · 86,082–86,155 bp · −
trnL-CAA · PQ075922.1 · 93,643–93,723 bp · −
ndhB · PQ075922.1 · 94,266–96,423 bp · −
rps7 · PQ075922.1 · 96,752–97,219 bp · −
trnN-GUU · PQ075922.1 · 108,100–108,171 bp · −
ndhF · PQ075922.1 · 109,228–111,489 bp · −
ndhD · PQ075922.1 · 113,852–115,354 bp · −
psaC · PQ075922.1 · 115,481–115,726 bp · −
ndhE · PQ075922.1 · 115,982–116,287 bp · −
ndhG · PQ075922.1 · 116,504–117,034 bp · −
ndhI · PQ075922.1 · 117,401–117,901 bp · −
ndhA · PQ075922.1 · 117,987–120,108 bp · −
ndhH · PQ075922.1 · 120,110–121,291 bp · −
rps15 · PQ075922.1 · 121,388–121,660 bp · −
ycf1 · PQ075922.1 · 121,854–127,490 bp · −
trnR-ACG · PQ075922.1 · 128,329–128,402 bp · −
rrn5 · PQ075922.1 · 128,637–128,757 bp · −
rrn4.5 · PQ075922.1 · 129,005–129,107 bp · −
rrn23 · PQ075922.1 · 129,206–132,017 bp · −
trnA-UGC · PQ075922.1 · 132,187–133,073 bp · −
trnI-GAU · PQ075922.1 · 133,138–134,158 bp · −
ycf68 · PQ075922.1 · 133,710–134,003 bp · −
rrn16 · PQ075922.1 · 134,457–135,947 bp · −
trnV-GAC · PQ075922.1 · 136,174–136,245 bp · −
ycf15 · PQ075922.1 · 142,497–142,694 bp · −
ycf2 · PQ075922.1 · 142,836–149,636 bp · −
psbK · PQ075922.1 · 7,457–7,642 bp · +
psbI · PQ075922.1 · 8,032–8,142 bp · +
trnG-UCC · PQ075922.1 · 9,050–9,806 bp · +
trnR-UCU · PQ075922.1 · 9,972–10,043 bp · +
trnC-GCA · PQ075922.1 · 28,180–28,250 bp · +
petN · PQ075922.1 · 28,966–29,055 bp · +
trnT-GGU · PQ075922.1 · 31,745–31,816 bp · +
psbD · PQ075922.1 · 33,122–34,183 bp · +
psbC · PQ075922.1 · 34,131–35,552 bp · +
psbZ · PQ075922.1 · 36,195–36,383 bp · +
trnG-GCC · PQ075922.1 · 36,663–36,733 bp · +
trnS-GGA · PQ075922.1 · 45,519–45,605 bp · +
trnL-UAA · PQ075922.1 · 47,572–48,130 bp · +
trnF-GAA · PQ075922.1 · 48,433–48,505 bp · +
trnM-CAU · PQ075922.1 · 52,659–52,731 bp · +
rbcL · PQ075922.1 · 55,570–57,033 bp · +
accD · PQ075922.1 · 57,747–59,225 bp · +
psaI · PQ075922.1 · 59,932–60,042 bp · +
ycf4 · PQ075922.1 · 60,476–61,030 bp · +
cemA · PQ075922.1 · 61,779–62,378 bp · +
petA · PQ075922.1 · 62,585–63,547 bp · +
petL · PQ075922.1 · 66,214–66,309 bp · +
petG · PQ075922.1 · 66,485–66,598 bp · +
psaJ · PQ075922.1 · 67,304–67,438 bp · +
rpl33 · PQ075922.1 · 67,914–68,114 bp · +
rps18 · PQ075922.1 · 68,289–68,594 bp · +
rps12 · PQ075922.1 · 137,817–138,607 bp · +
psbB · PQ075922.1 · 72,647–74,173 bp · +
psbT · PQ075922.1 · 74,365–74,472 bp · +
psbH · PQ075922.1 · 74,768–74,989 bp · +
petB · PQ075922.1 · 75,114–76,482 bp · +
petD · PQ075922.1 · 76,665–77,871 bp · +
ycf2 · PQ075922.1 · 86,244–93,044 bp · +
ycf15 · PQ075922.1 · 93,186–93,383 bp · +
trnV-GAC · PQ075922.1 · 99,635–99,706 bp · +
rrn16 · PQ075922.1 · 99,933–101,423 bp · +
trnI-GAU · PQ075922.1 · 101,722–102,742 bp · +
trnA-UGC · PQ075922.1 · 102,807–103,693 bp · +
rrn23 · PQ075922.1 · 103,863–106,674 bp · +
rrn4.5 · PQ075922.1 · 106,773–106,875 bp · +
rrn5 · PQ075922.1 · 107,123–107,243 bp · +
trnR-ACG · PQ075922.1 · 107,478–107,551 bp · +
rpl32 · PQ075922.1 · 111,817–111,993 bp · +
trnL-UAG · PQ075922.1 · 112,440–112,519 bp · +
ccsA · PQ075922.1 · 112,621–113,595 bp · +
trnN-GUU · PQ075922.1 · 127,709–127,780 bp · +
rps7 · PQ075922.1 · 138,661–139,128 bp · +
ndhB · PQ075922.1 · 139,457–141,614 bp · +
trnL-CAA · PQ075922.1 · 142,157–142,237 bp · +
trnI-CAU · PQ075922.1 · 149,725–149,798 bp · +
rpl23 · PQ075922.1 · 149,958–150,239 bp · +
rpl2 · PQ075922.1 · 150,258–151,739 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria mesostegia
ANNOTATED PLASTOME
PQ075922.1
151,839 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37960 75920 113879 151839 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6317 1161 Locate
trnQ-UUG gene − 7061 7132 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8032 8142 111 Locate
trnS-GCU gene − 8260 8347 88 Locate
trnG-UCC gene + 9050 9806 757 Locate
trnR-UCU gene + 9972 10043 72 Locate
atpA gene − 10140 11663 1524 Locate
atpF gene − 11745 12973 1229 Locate
atpH gene − 13337 13582 246 Locate
atpI gene − 14570 15313 744 Locate
rps2 gene − 15659 16369 711 Locate
rpoC2 gene − 16584 20789 4206 Locate
rpoC1 gene − 20944 23780 2837 Locate
rpoB gene − 23807 27019 3213 Locate
trnC-GCA gene + 28180 28250 71 Locate
petN gene + 28966 29055 90 Locate
psbM gene − 30137 30241 105 Locate
trnD-GUC gene − 30767 30840 74 Locate
trnY-GUA gene − 30954 31037 84 Locate
trnE-UUC gene − 31097 31169 73 Locate
trnT-GGU gene + 31745 31816 72 Locate
psbD gene + 33122 34183 1062 Locate
psbC gene + 34131 35552 1422 Locate
trnS-UGA gene − 35788 35879 92 Locate
psbZ gene + 36195 36383 189 Locate
trnG-GCC gene + 36663 36733 71 Locate
trnfM-CAU gene − 36879 36952 74 Locate
rps14 gene − 37107 37409 303 Locate
psaB gene − 37539 39743 2205 Locate
psaA gene − 39769 42021 2253 Locate
ycf3 gene − 42714 44636 1923 Locate
trnS-GGA gene + 45519 45605 87 Locate
rps4 gene − 45881 46486 606 Locate
trnT-UGU gene − 46826 46898 73 Locate
trnL-UAA gene + 47572 48130 559 Locate
trnF-GAA gene + 48433 48505 73 Locate
ndhJ gene − 49154 49630 477 Locate
ndhK gene − 49739 50500 762 Locate
ndhC gene − 50470 50832 363 Locate
trnV-UAC gene − 51818 52470 653 Locate
trnM-CAU gene + 52659 52731 73 Locate
atpE gene − 52925 53326 402 Locate
atpB gene − 53323 54819 1497 Locate
rbcL gene + 55570 57033 1464 Locate
accD gene + 57747 59225 1479 Locate
psaI gene + 59932 60042 111 Locate
ycf4 gene + 60476 61030 555 Locate
cemA gene + 61779 62378 600 Locate
petA gene + 62585 63547 963 Locate
psbJ gene − 64555 64677 123 Locate
psbL gene − 64811 65032 222 Locate
psbF gene − 64951 65070 120 Locate
psbE gene − 65085 65336 252 Locate
petL gene + 66214 66309 96 Locate
petG gene + 66485 66598 114 Locate
trnW-CCA gene − 66716 66789 74 Locate
trnP-UGG gene − 66959 67032 74 Locate
psaJ gene + 67304 67438 135 Locate
rpl33 gene + 67914 68114 201 Locate
rps18 gene + 68289 68594 306 Locate
rpl20 gene − 68831 69217 387 Locate
rps12 gene − 70000 70125 126 Locate
clpP gene − 70267 72195 1929 Locate
psbB gene + 72647 74173 1527 Locate
psbT gene + 74365 74472 108 Locate
psbN gene − 74533 74664 132 Locate
psbH gene + 74768 74989 222 Locate
petB gene + 75114 76482 1369 Locate
petD gene + 76665 77871 1207 Locate
rpoA gene − 78226 79026 801 Locate
rps11 gene − 79098 79514 417 Locate
rpl36 gene − 79616 79729 114 Locate
infA gene − 79824 80057 234 Locate
rps8 gene − 80181 80591 411 Locate
rpl14 gene − 80745 81113 369 Locate
rpl16 gene − 81240 82473 1234 Locate
rps3 gene − 82629 83291 663 Locate
rpl22 gene − 83293 83748 456 Locate
rps19 gene − 83808 84086 279 Locate
rpl2 gene − 84141 85622 1482 Locate
rpl23 gene − 85641 85922 282 Locate
trnI-CAU gene − 86082 86155 74 Locate
ycf2 gene + 86244 93044 6801 Locate
ycf15 gene + 93186 93383 198 Locate
trnL-CAA gene − 93643 93723 81 Locate
ndhB gene − 94266 96423 2158 Locate
rps7 gene − 96752 97219 468 Locate
rps12 gene − 97273 98063 791 Locate
trnV-GAC gene + 99635 99706 72 Locate
rrn16 gene + 99933 101423 1491 Locate
trnI-GAU gene + 101722 102742 1021 Locate
trnA-UGC gene + 102807 103693 887 Locate
rrn23 gene + 103863 106674 2812 Locate
rrn4.5 gene + 106773 106875 103 Locate
rrn5 gene + 107123 107243 121 Locate
trnR-ACG gene + 107478 107551 74 Locate
trnN-GUU gene − 108100 108171 72 Locate
ndhF gene − 109228 111489 2262 Locate
rpl32 gene + 111817 111993 177 Locate
trnL-UAG gene + 112440 112519 80 Locate
ccsA gene + 112621 113595 975 Locate
ndhD gene − 113852 115354 1503 Locate
psaC gene − 115481 115726 246 Locate
ndhE gene − 115982 116287 306 Locate
ndhG gene − 116504 117034 531 Locate
ndhI gene − 117401 117901 501 Locate
ndhA gene − 117987 120108 2122 Locate
ndhH gene − 120110 121291 1182 Locate
rps15 gene − 121388 121660 273 Locate
ycf1 gene − 121854 127490 5637 Locate
trnN-GUU gene + 127709 127780 72 Locate
trnR-ACG gene − 128329 128402 74 Locate
rrn5 gene − 128637 128757 121 Locate
rrn4.5 gene − 129005 129107 103 Locate
rrn23 gene − 129206 132017 2812 Locate
trnA-UGC gene − 132187 133073 887 Locate
trnI-GAU gene − 133138 134158 1021 Locate
ycf68 gene − 133710 134003 294 Locate
rrn16 gene − 134457 135947 1491 Locate
trnV-GAC gene − 136174 136245 72 Locate
rps12 gene + 137817 138607 791 Locate
rps7 gene + 138661 139128 468 Locate
ndhB gene + 139457 141614 2158 Locate
trnL-CAA gene + 142157 142237 81 Locate
ycf15 gene − 142497 142694 198 Locate
ycf2 gene − 142836 149636 6801 Locate
trnI-CAU gene + 149725 149798 74 Locate
rpl23 gene + 149958 150239 282 Locate
rpl2 gene + 150258 151739 1482 Locate
Status Available
Accession PQ075922.1
Length 151,839 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources