Scutellaria mexicana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420976.1 · 3–76 bp · −
psbA · MW420976.1 · 372–1,430 bp · −
trnK-UUU · MW420976.1 · 1,675–4,255 bp · −
matK · MW420976.1 · 1,966–3,501 bp · −
rps16 · MW420976.1 · 5,179–6,346 bp · −
trnQ-UUC · MW420976.1 · 7,477–7,548 bp · −
trnS-GCU · MW420976.1 · 8,679–8,766 bp · −
atpA · MW420976.1 · 10,550–12,073 bp · −
atpF · MW420976.1 · 12,156–13,383 bp · −
atpH · MW420976.1 · 13,744–13,989 bp · −
atpI · MW420976.1 · 14,995–15,738 bp · −
rps2 · MW420976.1 · 16,081–16,791 bp · −
rpoC2 · MW420976.1 · 17,008–21,213 bp · −
rpoC1 · MW420976.1 · 21,368–24,216 bp · −
rpoB · MW420976.1 · 24,243–27,455 bp · −
psbM · MW420976.1 · 30,533–30,646 bp · −
trnD-GUC · MW420976.1 · 31,173–31,246 bp · −
trnY-GUA · MW420976.1 · 31,360–31,443 bp · −
trnE-UUC · MW420976.1 · 31,503–31,575 bp · −
trnS-UCA · MW420976.1 · 36,213–36,305 bp · −
trnfM-CAU · MW420976.1 · 37,311–37,384 bp · −
rps14 · MW420976.1 · 37,534–37,836 bp · −
psaB · MW420976.1 · 37,965–40,169 bp · −
psaA · MW420976.1 · 40,195–42,447 bp · −
ycf3 · MW420976.1 · 43,147–45,059 bp · −
rps4 · MW420976.1 · 46,307–46,912 bp · −
trnT-UGU · MW420976.1 · 47,256–47,328 bp · −
ndhJ · MW420976.1 · 49,607–50,083 bp · −
ndhK · MW420976.1 · 50,183–50,860 bp · −
ndhC · MW420976.1 · 50,913–51,275 bp · −
trnV-UAC · MW420976.1 · 52,266–52,918 bp · −
atpE · MW420976.1 · 53,381–53,782 bp · −
atpB · MW420976.1 · 53,779–55,266 bp · −
pabJ · MW420976.1 · 65,012–65,134 bp · −
psbL · MW420976.1 · 65,268–65,384 bp · −
psbF · MW420976.1 · 65,408–65,527 bp · −
psbE · MW420976.1 · 65,542–65,793 bp · −
trnW-CCA · MW420976.1 · 67,203–67,276 bp · −
trnP-UGG · MW420976.1 · 67,446–67,519 bp · −
rpl20 · MW420976.1 · 69,314–69,700 bp · −
rps12 · MW420976.1 · 70,488–70,613 bp · −
rps12 · MW420976.1 · 97,845–98,635 bp · −
clpP · MW420976.1 · 70,756–72,684 bp · −
psbN · MW420976.1 · 75,050–75,181 bp · −
rpoA · MW420976.1 · 78,553–79,566 bp · −
rps11 · MW420976.1 · 79,638–80,054 bp · −
rpl36 · MW420976.1 · 80,156–80,269 bp · −
infA · MW420976.1 · 80,365–80,598 bp · −
rps8 · MW420976.1 · 80,718–81,128 bp · −
rpl14 · MW420976.1 · 81,300–81,668 bp · −
rpl16 · MW420976.1 · 81,796–83,039 bp · −
rps3 · MW420976.1 · 83,195–83,857 bp · −
rpl22 · MW420976.1 · 83,859–84,314 bp · −
rps19 · MW420976.1 · 84,374–84,652 bp · −
rpl2 · MW420976.1 · 84,707–86,189 bp · −
rpl23 · MW420976.1 · 86,208–86,489 bp · −
trnI-CAU · MW420976.1 · 86,649–86,722 bp · −
trnL-CAA · MW420976.1 · 94,215–94,295 bp · −
ndhB · MW420976.1 · 94,838–97,049 bp · −
rps7 · MW420976.1 · 97,324–97,791 bp · −
ndhF · MW420976.1 · 109,825–112,065 bp · −
ndhD · MW420976.1 · 114,594–116,114 bp · −
psaC · MW420976.1 · 116,217–116,462 bp · −
ndhE · MW420976.1 · 116,719–117,024 bp · −
ndhG · MW420976.1 · 117,245–117,775 bp · −
ndhI · MW420976.1 · 118,140–118,640 bp · −
ndhA · MW420976.1 · 118,721–120,821 bp · −
ndhH · MW420976.1 · 120,823–122,004 bp · −
rps15 · MW420976.1 · 122,107–122,379 bp · −
ycf1 · MW420976.1 · 122,646–128,078 bp · −
trnR-ACG · MW420976.1 · 129,025–129,098 bp · −
rrn5 · MW420976.1 · 129,333–129,453 bp · −
rrn4.5 · MW420976.1 · 129,750–129,802 bp · −
rrn23 · MW420976.1 · 129,901–132,713 bp · −
trnA-UGC · MW420976.1 · 132,883–133,769 bp · −
trnI-GAU · MW420976.1 · 133,835–134,855 bp · −
rrn16 · MW420976.1 · 135,154–136,644 bp · −
trnV-GAC · MW420976.1 · 136,872–136,943 bp · −
ycf15 · MW420976.1 · 143,197–143,394 bp · −
ycf2 · MW420976.1 · 143,536–150,345 bp · −
psbK · MW420976.1 · 7,873–8,058 bp · +
psbI · MW420976.1 · 8,450–8,560 bp · +
trnG-CGA · MW420976.1 · 9,454–10,207 bp · +
trnR-UCU · MW420976.1 · 10,382–10,453 bp · +
trnC-GCA · MW420976.1 · 28,635–28,705 bp · +
petN · MW420976.1 · 29,424–29,513 bp · +
trnT-GGU · MW420976.1 · 32,158–32,229 bp · +
psbD · MW420976.1 · 33,539–34,600 bp · +
psbC · MW420976.1 · 34,548–35,969 bp · +
psbZ · MW420976.1 · 36,625–36,813 bp · +
trnG-GCC · MW420976.1 · 37,085–37,155 bp · +
trnS-GGA · MW420976.1 · 45,935–46,021 bp · +
trnL-UAA · MW420976.1 · 48,010–48,579 bp · +
trnF-GAA · MW420976.1 · 48,884–48,956 bp · +
trnM-CAU · MW420976.1 · 53,099–53,171 bp · +
rbcL · MW420976.1 · 56,038–57,480 bp · +
accD · MW420976.1 · 58,201–59,667 bp · +
psaI · MW420976.1 · 60,378–60,488 bp · +
ycf4 · MW420976.1 · 60,922–61,476 bp · +
cemA · MW420976.1 · 62,159–62,818 bp · +
petA · MW420976.1 · 63,025–63,987 bp · +
petL · MW420976.1 · 66,701–66,796 bp · +
petG · MW420976.1 · 66,971–67,084 bp · +
psbJ · MW420976.1 · 67,793–67,927 bp · +
rpl33 · MW420976.1 · 68,399–68,599 bp · +
rps18 · MW420976.1 · 68,774–69,079 bp · +
rps12 · MW420976.1 · 138,521–139,311 bp · +
psbB · MW420976.1 · 73,158–74,684 bp · +
psbT · MW420976.1 · 74,875–74,976 bp · +
psbH · MW420976.1 · 75,285–75,506 bp · +
petB · MW420976.1 · 75,631–76,999 bp · +
petD · MW420976.1 · 77,189–78,390 bp · +
ycf2 · MW420976.1 · 86,811–93,620 bp · +
ycf15 · MW420976.1 · 93,762–93,959 bp · +
trnV-GAC · MW420976.1 · 100,213–100,284 bp · +
rrn16 · MW420976.1 · 100,512–102,002 bp · +
trnI-GAU · MW420976.1 · 102,301–103,321 bp · +
trnA-UGC · MW420976.1 · 103,387–104,273 bp · +
rrn23 · MW420976.1 · 104,443–107,255 bp · +
rrn4.5 · MW420976.1 · 107,354–107,406 bp · +
rrn5 · MW420976.1 · 107,703–107,823 bp · +
trnR-ACG · MW420976.1 · 108,058–108,131 bp · +
trnN-GUU · MW420976.1 · 108,678–108,749 bp · +
rpl32 · MW420976.1 · 112,587–112,763 bp · +
trnL-UAG · MW420976.1 · 113,201–113,280 bp · +
ccsA · MW420976.1 · 113,387–114,361 bp · +
trnN-GUU · MW420976.1 · 128,407–128,478 bp · +
rps7 · MW420976.1 · 139,365–139,832 bp · +
ndhB · MW420976.1 · 140,107–142,318 bp · +
trnL-CAA · MW420976.1 · 142,861–142,941 bp · +
trnI-CAU · MW420976.1 · 150,434–150,507 bp · +
rpl23 · MW420976.1 · 150,667–150,948 bp · +
rpl2 · MW420976.1 · 150,967–152,449 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria mexicana
ANNOTATED PLASTOME
MW420976.1
152,544 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38136 76272 114408 152544 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 372 1430 1059 Locate
trnK-UUU gene − 1675 4255 2581 Locate
matK gene − 1966 3501 1536 Locate
rps16 gene − 5179 6346 1168 Locate
trnQ-UUC gene − 7477 7548 72 Locate
psbK gene + 7873 8058 186 Locate
psbI gene + 8450 8560 111 Locate
trnS-GCU gene − 8679 8766 88 Locate
trnG-CGA gene + 9454 10207 754 Locate
trnR-UCU gene + 10382 10453 72 Locate
atpA gene − 10550 12073 1524 Locate
atpF gene − 12156 13383 1228 Locate
atpH gene − 13744 13989 246 Locate
atpI gene − 14995 15738 744 Locate
rps2 gene − 16081 16791 711 Locate
rpoC2 gene − 17008 21213 4206 Locate
rpoC1 gene − 21368 24216 2849 Locate
rpoB gene − 24243 27455 3213 Locate
trnC-GCA gene + 28635 28705 71 Locate
petN gene + 29424 29513 90 Locate
psbM gene − 30533 30646 114 Locate
trnD-GUC gene − 31173 31246 74 Locate
trnY-GUA gene − 31360 31443 84 Locate
trnE-UUC gene − 31503 31575 73 Locate
trnT-GGU gene + 32158 32229 72 Locate
psbD gene + 33539 34600 1062 Locate
psbC gene + 34548 35969 1422 Locate
trnS-UCA gene − 36213 36305 93 Locate
psbZ gene + 36625 36813 189 Locate
trnG-GCC gene + 37085 37155 71 Locate
trnfM-CAU gene − 37311 37384 74 Locate
rps14 gene − 37534 37836 303 Locate
psaB gene − 37965 40169 2205 Locate
psaA gene − 40195 42447 2253 Locate
ycf3 gene − 43147 45059 1913 Locate
trnS-GGA gene + 45935 46021 87 Locate
rps4 gene − 46307 46912 606 Locate
trnT-UGU gene − 47256 47328 73 Locate
trnL-UAA gene + 48010 48579 570 Locate
trnF-GAA gene + 48884 48956 73 Locate
ndhJ gene − 49607 50083 477 Locate
ndhK gene − 50183 50860 678 Locate
ndhC gene − 50913 51275 363 Locate
trnV-UAC gene − 52266 52918 653 Locate
trnM-CAU gene + 53099 53171 73 Locate
atpE gene − 53381 53782 402 Locate
atpB gene − 53779 55266 1488 Locate
rbcL gene + 56038 57480 1443 Locate
accD gene + 58201 59667 1467 Locate
psaI gene + 60378 60488 111 Locate
ycf4 gene + 60922 61476 555 Locate
cemA gene + 62159 62818 660 Locate
petA gene + 63025 63987 963 Locate
pabJ gene − 65012 65134 123 Locate
psbL gene − 65268 65384 117 Locate
psbF gene − 65408 65527 120 Locate
psbE gene − 65542 65793 252 Locate
petL gene + 66701 66796 96 Locate
petG gene + 66971 67084 114 Locate
trnW-CCA gene − 67203 67276 74 Locate
trnP-UGG gene − 67446 67519 74 Locate
psbJ gene + 67793 67927 135 Locate
rpl33 gene + 68399 68599 201 Locate
rps18 gene + 68774 69079 306 Locate
rpl20 gene − 69314 69700 387 Locate
rps12 gene − 70488 70613 126 Locate
clpP gene − 70756 72684 1929 Locate
psbB gene + 73158 74684 1527 Locate
psbT gene + 74875 74976 102 Locate
psbN gene − 75050 75181 132 Locate
psbH gene + 75285 75506 222 Locate
petB gene + 75631 76999 1369 Locate
petD gene + 77189 78390 1202 Locate
rpoA gene − 78553 79566 1014 Locate
rps11 gene − 79638 80054 417 Locate
rpl36 gene − 80156 80269 114 Locate
infA gene − 80365 80598 234 Locate
rps8 gene − 80718 81128 411 Locate
rpl14 gene − 81300 81668 369 Locate
rpl16 gene − 81796 83039 1244 Locate
rps3 gene − 83195 83857 663 Locate
rpl22 gene − 83859 84314 456 Locate
rps19 gene − 84374 84652 279 Locate
rpl2 gene − 84707 86189 1483 Locate
rpl23 gene − 86208 86489 282 Locate
trnI-CAU gene − 86649 86722 74 Locate
ycf2 gene + 86811 93620 6810 Locate
ycf15 gene + 93762 93959 198 Locate
trnL-CAA gene − 94215 94295 81 Locate
ndhB gene − 94838 97049 2212 Locate
rps7 gene − 97324 97791 468 Locate
rps12 gene − 97845 98635 791 Locate
trnV-GAC gene + 100213 100284 72 Locate
rrn16 gene + 100512 102002 1491 Locate
trnI-GAU gene + 102301 103321 1021 Locate
trnA-UGC gene + 103387 104273 887 Locate
rrn23 gene + 104443 107255 2813 Locate
rrn4.5 gene + 107354 107406 53 Locate
rrn5 gene + 107703 107823 121 Locate
trnR-ACG gene + 108058 108131 74 Locate
trnN-GUU gene + 108678 108749 72 Locate
ndhF gene − 109825 112065 2241 Locate
rpl32 gene + 112587 112763 177 Locate
trnL-UAG gene + 113201 113280 80 Locate
ccsA gene + 113387 114361 975 Locate
ndhD gene − 114594 116114 1521 Locate
psaC gene − 116217 116462 246 Locate
ndhE gene − 116719 117024 306 Locate
ndhG gene − 117245 117775 531 Locate
ndhI gene − 118140 118640 501 Locate
ndhA gene − 118721 120821 2101 Locate
ndhH gene − 120823 122004 1182 Locate
rps15 gene − 122107 122379 273 Locate
ycf1 gene − 122646 128078 5433 Locate
trnN-GUU gene + 128407 128478 72 Locate
trnR-ACG gene − 129025 129098 74 Locate
rrn5 gene − 129333 129453 121 Locate
rrn4.5 gene − 129750 129802 53 Locate
rrn23 gene − 129901 132713 2813 Locate
trnA-UGC gene − 132883 133769 887 Locate
trnI-GAU gene − 133835 134855 1021 Locate
rrn16 gene − 135154 136644 1491 Locate
trnV-GAC gene − 136872 136943 72 Locate
rps12 gene + 138521 139311 791 Locate
rps7 gene + 139365 139832 468 Locate
ndhB gene + 140107 142318 2212 Locate
trnL-CAA gene + 142861 142941 81 Locate
ycf15 gene − 143197 143394 198 Locate
ycf2 gene − 143536 150345 6810 Locate
trnI-CAU gene + 150434 150507 74 Locate
rpl23 gene + 150667 150948 282 Locate
rpl2 gene + 150967 152449 1483 Locate
Status Available
Accession MW420976.1
Length 152,544 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources