Scutellaria microdasys chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059319.1 · 4–77 bp · −
psbA · PQ059319.1 · 374–1,432 bp · −
trnK-UUU · PQ059319.1 · 1,674–4,255 bp · −
matK · PQ059319.1 · 1,964–3,490 bp · −
rps16 · PQ059319.1 · 5,157–6,315 bp · −
trnQ-UUG · PQ059319.1 · 7,061–7,132 bp · −
trnS-GCU · PQ059319.1 · 8,267–8,354 bp · −
atpA · PQ059319.1 · 10,154–11,677 bp · −
atpF · PQ059319.1 · 11,759–12,988 bp · −
atpH · PQ059319.1 · 13,349–13,594 bp · −
atpI · PQ059319.1 · 14,582–15,325 bp · −
rps2 · PQ059319.1 · 15,671–16,381 bp · −
rpoC2 · PQ059319.1 · 16,596–20,801 bp · −
rpoC1 · PQ059319.1 · 20,956–23,792 bp · −
rpoB · PQ059319.1 · 23,819–27,031 bp · −
psbM · PQ059319.1 · 30,149–30,253 bp · −
trnD-GUC · PQ059319.1 · 30,779–30,852 bp · −
trnY-GUA · PQ059319.1 · 30,966–31,049 bp · −
trnE-UUC · PQ059319.1 · 31,109–31,181 bp · −
trnS-UGA · PQ059319.1 · 35,800–35,891 bp · −
trnfM-CAU · PQ059319.1 · 36,890–36,963 bp · −
rps14 · PQ059319.1 · 37,118–37,420 bp · −
psaB · PQ059319.1 · 37,549–39,753 bp · −
psaA · PQ059319.1 · 39,779–42,031 bp · −
ycf3 · PQ059319.1 · 42,720–44,641 bp · −
rps4 · PQ059319.1 · 45,886–46,491 bp · −
trnT-UGU · PQ059319.1 · 46,838–46,910 bp · −
ndhJ · PQ059319.1 · 49,171–49,647 bp · −
ndhK · PQ059319.1 · 49,756–50,433 bp · −
ndhC · PQ059319.1 · 50,487–50,849 bp · −
trnV-UAC · PQ059319.1 · 51,835–52,487 bp · −
atpE · PQ059319.1 · 52,942–53,343 bp · −
atpB · PQ059319.1 · 53,340–54,836 bp · −
psbJ · PQ059319.1 · 64,572–64,694 bp · −
psbL · PQ059319.1 · 64,828–64,944 bp · −
psbF · PQ059319.1 · 64,968–65,087 bp · −
psbE · PQ059319.1 · 65,102–65,353 bp · −
trnW-CCA · PQ059319.1 · 66,734–66,807 bp · −
trnP-UGG · PQ059319.1 · 66,977–67,050 bp · −
rpl20 · PQ059319.1 · 68,847–69,233 bp · −
rps12 · PQ059319.1 · 70,016–70,141 bp · −
rps12 · PQ059319.1 · 97,288–98,078 bp · −
clpP · PQ059319.1 · 70,283–72,211 bp · −
psbN · PQ059319.1 · 74,549–74,680 bp · −
rpoA · PQ059319.1 · 78,242–79,042 bp · −
rps11 · PQ059319.1 · 79,114–79,530 bp · −
rpl36 · PQ059319.1 · 79,632–79,745 bp · −
infA · PQ059319.1 · 79,840–80,073 bp · −
rps8 · PQ059319.1 · 80,197–80,607 bp · −
rpl14 · PQ059319.1 · 80,760–81,128 bp · −
rpl16 · PQ059319.1 · 81,255–82,488 bp · −
rps3 · PQ059319.1 · 82,644–83,306 bp · −
rpl22 · PQ059319.1 · 83,308–83,763 bp · −
rps19 · PQ059319.1 · 83,823–84,101 bp · −
rpl2 · PQ059319.1 · 84,156–85,637 bp · −
rpl23 · PQ059319.1 · 85,656–85,937 bp · −
trnI-CAU · PQ059319.1 · 86,097–86,170 bp · −
trnL-CAA · PQ059319.1 · 93,658–93,738 bp · −
ndhB · PQ059319.1 · 94,281–96,492 bp · −
rps7 · PQ059319.1 · 96,767–97,234 bp · −
trnN-GUU · PQ059319.1 · 108,116–108,187 bp · −
ndhF · PQ059319.1 · 109,244–111,505 bp · −
ndhD · PQ059319.1 · 113,852–115,381 bp · −
psaC · PQ059319.1 · 115,483–115,728 bp · −
ndhE · PQ059319.1 · 115,984–116,289 bp · −
ndhG · PQ059319.1 · 116,506–117,036 bp · −
ndhI · PQ059319.1 · 117,403–117,903 bp · −
ndhA · PQ059319.1 · 117,989–120,110 bp · −
ndhH · PQ059319.1 · 120,112–121,293 bp · −
rps15 · PQ059319.1 · 121,390–121,662 bp · −
ycf1 · PQ059319.1 · 121,860–127,496 bp · −
trnR-ACG · PQ059319.1 · 128,335–128,408 bp · −
rrn5 · PQ059319.1 · 128,643–128,763 bp · −
rrn4.5 · PQ059319.1 · 129,011–129,113 bp · −
rrn23 · PQ059319.1 · 129,212–132,023 bp · −
trnA-UGC · PQ059319.1 · 132,193–133,080 bp · −
trnI-GAU · PQ059319.1 · 133,145–134,165 bp · −
ycf68 · PQ059319.1 · 133,717–134,010 bp · −
rrn16 · PQ059319.1 · 134,464–135,954 bp · −
trnV-GAC · PQ059319.1 · 136,181–136,252 bp · −
ycf15 · PQ059319.1 · 142,504–142,752 bp · −
ycf2 · PQ059319.1 · 142,843–149,643 bp · −
psbK · PQ059319.1 · 7,457–7,642 bp · +
psbI · PQ059319.1 · 8,037–8,147 bp · +
trnG-UCC · PQ059319.1 · 9,055–9,811 bp · +
trnR-UCU · PQ059319.1 · 9,986–10,057 bp · +
trnC-GCA · PQ059319.1 · 28,192–28,262 bp · +
petN · PQ059319.1 · 28,977–29,066 bp · +
trnT-GGU · PQ059319.1 · 31,757–31,828 bp · +
psbD · PQ059319.1 · 33,134–34,195 bp · +
psbC · PQ059319.1 · 34,143–35,564 bp · +
psbZ · PQ059319.1 · 36,207–36,395 bp · +
trnG-GCC · PQ059319.1 · 36,672–36,742 bp · +
trnS-GGA · PQ059319.1 · 45,524–45,610 bp · +
trnL-UAA · PQ059319.1 · 47,591–48,150 bp · +
trnF-GAA · PQ059319.1 · 48,452–48,524 bp · +
trnM-CAU · PQ059319.1 · 52,676–52,748 bp · +
rbcL · PQ059319.1 · 55,587–57,050 bp · +
accD · PQ059319.1 · 57,764–59,242 bp · +
psaI · PQ059319.1 · 59,949–60,059 bp · +
ycf4 · PQ059319.1 · 60,493–61,047 bp · +
cemA · PQ059319.1 · 61,796–62,395 bp · +
petA · PQ059319.1 · 62,602–63,564 bp · +
petL · PQ059319.1 · 66,231–66,326 bp · +
petG · PQ059319.1 · 66,502–66,615 bp · +
psaJ · PQ059319.1 · 67,322–67,456 bp · +
rpl33 · PQ059319.1 · 67,932–68,132 bp · +
rps18 · PQ059319.1 · 68,307–68,612 bp · +
rps12 · PQ059319.1 · 137,824–138,614 bp · +
psbB · PQ059319.1 · 72,663–74,189 bp · +
psbT · PQ059319.1 · 74,381–74,488 bp · +
psbH · PQ059319.1 · 74,784–75,005 bp · +
petB · PQ059319.1 · 75,130–76,498 bp · +
petD · PQ059319.1 · 76,681–77,887 bp · +
ycf2 · PQ059319.1 · 86,259–93,059 bp · +
ycf15 · PQ059319.1 · 93,150–93,398 bp · +
trnV-GAC · PQ059319.1 · 99,650–99,721 bp · +
rrn16 · PQ059319.1 · 99,948–101,438 bp · +
trnI-GAU · PQ059319.1 · 101,737–102,757 bp · +
trnA-UGC · PQ059319.1 · 102,822–103,709 bp · +
rrn23 · PQ059319.1 · 103,879–106,690 bp · +
rrn4.5 · PQ059319.1 · 106,789–106,891 bp · +
rrn5 · PQ059319.1 · 107,139–107,259 bp · +
trnR-ACG · PQ059319.1 · 107,494–107,567 bp · +
rpl32 · PQ059319.1 · 111,834–112,010 bp · +
trnL-UAG · PQ059319.1 · 112,457–112,536 bp · +
ccsA · PQ059319.1 · 112,638–113,612 bp · +
trnN-GUU · PQ059319.1 · 127,715–127,786 bp · +
rps7 · PQ059319.1 · 138,668–139,135 bp · +
ndhB · PQ059319.1 · 139,410–141,621 bp · +
trnL-CAA · PQ059319.1 · 142,164–142,244 bp · +
trnI-CAU · PQ059319.1 · 149,732–149,805 bp · +
rpl23 · PQ059319.1 · 149,965–150,246 bp · +
rpl2 · PQ059319.1 · 150,265–151,746 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria microdasys
ANNOTATED PLASTOME
PQ059319.1
151,846 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37962 75923 113884 151846 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6315 1159 Locate
trnQ-UUG gene − 7061 7132 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8037 8147 111 Locate
trnS-GCU gene − 8267 8354 88 Locate
trnG-UCC gene + 9055 9811 757 Locate
trnR-UCU gene + 9986 10057 72 Locate
atpA gene − 10154 11677 1524 Locate
atpF gene − 11759 12988 1230 Locate
atpH gene − 13349 13594 246 Locate
atpI gene − 14582 15325 744 Locate
rps2 gene − 15671 16381 711 Locate
rpoC2 gene − 16596 20801 4206 Locate
rpoC1 gene − 20956 23792 2837 Locate
rpoB gene − 23819 27031 3213 Locate
trnC-GCA gene + 28192 28262 71 Locate
petN gene + 28977 29066 90 Locate
psbM gene − 30149 30253 105 Locate
trnD-GUC gene − 30779 30852 74 Locate
trnY-GUA gene − 30966 31049 84 Locate
trnE-UUC gene − 31109 31181 73 Locate
trnT-GGU gene + 31757 31828 72 Locate
psbD gene + 33134 34195 1062 Locate
psbC gene + 34143 35564 1422 Locate
trnS-UGA gene − 35800 35891 92 Locate
psbZ gene + 36207 36395 189 Locate
trnG-GCC gene + 36672 36742 71 Locate
trnfM-CAU gene − 36890 36963 74 Locate
rps14 gene − 37118 37420 303 Locate
psaB gene − 37549 39753 2205 Locate
psaA gene − 39779 42031 2253 Locate
ycf3 gene − 42720 44641 1922 Locate
trnS-GGA gene + 45524 45610 87 Locate
rps4 gene − 45886 46491 606 Locate
trnT-UGU gene − 46838 46910 73 Locate
trnL-UAA gene + 47591 48150 560 Locate
trnF-GAA gene + 48452 48524 73 Locate
ndhJ gene − 49171 49647 477 Locate
ndhK gene − 49756 50433 678 Locate
ndhC gene − 50487 50849 363 Locate
trnV-UAC gene − 51835 52487 653 Locate
trnM-CAU gene + 52676 52748 73 Locate
atpE gene − 52942 53343 402 Locate
atpB gene − 53340 54836 1497 Locate
rbcL gene + 55587 57050 1464 Locate
accD gene + 57764 59242 1479 Locate
psaI gene + 59949 60059 111 Locate
ycf4 gene + 60493 61047 555 Locate
cemA gene + 61796 62395 600 Locate
petA gene + 62602 63564 963 Locate
psbJ gene − 64572 64694 123 Locate
psbL gene − 64828 64944 117 Locate
psbF gene − 64968 65087 120 Locate
psbE gene − 65102 65353 252 Locate
petL gene + 66231 66326 96 Locate
petG gene + 66502 66615 114 Locate
trnW-CCA gene − 66734 66807 74 Locate
trnP-UGG gene − 66977 67050 74 Locate
psaJ gene + 67322 67456 135 Locate
rpl33 gene + 67932 68132 201 Locate
rps18 gene + 68307 68612 306 Locate
rpl20 gene − 68847 69233 387 Locate
rps12 gene − 70016 70141 126 Locate
clpP gene − 70283 72211 1929 Locate
psbB gene + 72663 74189 1527 Locate
psbT gene + 74381 74488 108 Locate
psbN gene − 74549 74680 132 Locate
psbH gene + 74784 75005 222 Locate
petB gene + 75130 76498 1369 Locate
petD gene + 76681 77887 1207 Locate
rpoA gene − 78242 79042 801 Locate
rps11 gene − 79114 79530 417 Locate
rpl36 gene − 79632 79745 114 Locate
infA gene − 79840 80073 234 Locate
rps8 gene − 80197 80607 411 Locate
rpl14 gene − 80760 81128 369 Locate
rpl16 gene − 81255 82488 1234 Locate
rps3 gene − 82644 83306 663 Locate
rpl22 gene − 83308 83763 456 Locate
rps19 gene − 83823 84101 279 Locate
rpl2 gene − 84156 85637 1482 Locate
rpl23 gene − 85656 85937 282 Locate
trnI-CAU gene − 86097 86170 74 Locate
ycf2 gene + 86259 93059 6801 Locate
ycf15 gene + 93150 93398 249 Locate
trnL-CAA gene − 93658 93738 81 Locate
ndhB gene − 94281 96492 2212 Locate
rps7 gene − 96767 97234 468 Locate
rps12 gene − 97288 98078 791 Locate
trnV-GAC gene + 99650 99721 72 Locate
rrn16 gene + 99948 101438 1491 Locate
trnI-GAU gene + 101737 102757 1021 Locate
trnA-UGC gene + 102822 103709 888 Locate
rrn23 gene + 103879 106690 2812 Locate
rrn4.5 gene + 106789 106891 103 Locate
rrn5 gene + 107139 107259 121 Locate
trnR-ACG gene + 107494 107567 74 Locate
trnN-GUU gene − 108116 108187 72 Locate
ndhF gene − 109244 111505 2262 Locate
rpl32 gene + 111834 112010 177 Locate
trnL-UAG gene + 112457 112536 80 Locate
ccsA gene + 112638 113612 975 Locate
ndhD gene − 113852 115381 1530 Locate
psaC gene − 115483 115728 246 Locate
ndhE gene − 115984 116289 306 Locate
ndhG gene − 116506 117036 531 Locate
ndhI gene − 117403 117903 501 Locate
ndhA gene − 117989 120110 2122 Locate
ndhH gene − 120112 121293 1182 Locate
rps15 gene − 121390 121662 273 Locate
ycf1 gene − 121860 127496 5637 Locate
trnN-GUU gene + 127715 127786 72 Locate
trnR-ACG gene − 128335 128408 74 Locate
rrn5 gene − 128643 128763 121 Locate
rrn4.5 gene − 129011 129113 103 Locate
rrn23 gene − 129212 132023 2812 Locate
trnA-UGC gene − 132193 133080 888 Locate
trnI-GAU gene − 133145 134165 1021 Locate
ycf68 gene − 133717 134010 294 Locate
rrn16 gene − 134464 135954 1491 Locate
trnV-GAC gene − 136181 136252 72 Locate
rps12 gene + 137824 138614 791 Locate
rps7 gene + 138668 139135 468 Locate
ndhB gene + 139410 141621 2212 Locate
trnL-CAA gene + 142164 142244 81 Locate
ycf15 gene − 142504 142752 249 Locate
ycf2 gene − 142843 149643 6801 Locate
trnI-CAU gene + 149732 149805 74 Locate
rpl23 gene + 149965 150246 282 Locate
rpl2 gene + 150265 151746 1482 Locate
Status Available
Accession PQ059319.1
Length 151,846 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources