Scutellaria microviolacea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059320.1 · 3–76 bp · −
psbA · PQ059320.1 · 370–1,428 bp · −
trnK-UUU · PQ059320.1 · 1,670–4,258 bp · −
matK · PQ059320.1 · 1,965–3,500 bp · −
rps16 · PQ059320.1 · 5,137–6,300 bp · −
trnQ-UUG · PQ059320.1 · 7,305–7,376 bp · −
trnS-GCU · PQ059320.1 · 8,508–8,595 bp · −
atpA · PQ059320.1 · 10,376–11,899 bp · −
atpF · PQ059320.1 · 11,982–13,209 bp · −
atpH · PQ059320.1 · 13,573–13,818 bp · −
atpI · PQ059320.1 · 14,814–15,557 bp · −
rps2 · PQ059320.1 · 15,906–16,616 bp · −
rpoC2 · PQ059320.1 · 16,833–21,038 bp · −
rpoC1 · PQ059320.1 · 21,193–24,014 bp · −
rpoB · PQ059320.1 · 24,041–27,253 bp · −
psbM · PQ059320.1 · 30,291–30,395 bp · −
trnD-GUC · PQ059320.1 · 30,922–30,995 bp · −
trnY-GUA · PQ059320.1 · 31,109–31,192 bp · −
trnE-UUC · PQ059320.1 · 31,252–31,324 bp · −
trnS-UGA · PQ059320.1 · 35,943–36,034 bp · −
trnfM-CAU · PQ059320.1 · 37,029–37,102 bp · −
rps14 · PQ059320.1 · 37,252–37,554 bp · −
psaB · PQ059320.1 · 37,682–39,886 bp · −
psaA · PQ059320.1 · 39,912–42,164 bp · −
ycf3 · PQ059320.1 · 42,833–44,755 bp · −
rps4 · PQ059320.1 · 46,001–46,606 bp · −
trnT-UGU · PQ059320.1 · 46,888–46,960 bp · −
ndhJ · PQ059320.1 · 49,234–49,710 bp · −
ndhK · PQ059320.1 · 49,818–50,579 bp · −
ndhC · PQ059320.1 · 50,549–50,911 bp · −
trnV-UAC · PQ059320.1 · 51,762–52,414 bp · −
atpE · PQ059320.1 · 52,883–53,284 bp · −
atpB · PQ059320.1 · 53,281–54,768 bp · −
psbJ · PQ059320.1 · 64,352–64,474 bp · −
psbL · PQ059320.1 · 64,608–64,724 bp · −
psbF · PQ059320.1 · 64,748–64,867 bp · −
psbE · PQ059320.1 · 64,882–65,133 bp · −
trnW-CCA · PQ059320.1 · 66,545–66,618 bp · −
trnP-UGG · PQ059320.1 · 66,788–66,861 bp · −
rpl20 · PQ059320.1 · 68,654–69,040 bp · −
rps12 · PQ059320.1 · 69,830–69,955 bp · −
rps12 · PQ059320.1 · 97,128–97,918 bp · −
clpP · PQ059320.1 · 70,098–72,030 bp · −
psbN · PQ059320.1 · 74,368–74,499 bp · −
rpoA · PQ059320.1 · 77,871–78,884 bp · −
rps11 · PQ059320.1 · 78,956–79,372 bp · −
rpl36 · PQ059320.1 · 79,474–79,587 bp · −
infA · PQ059320.1 · 79,683–79,916 bp · −
rps8 · PQ059320.1 · 80,036–80,446 bp · −
rpl14 · PQ059320.1 · 80,614–80,982 bp · −
rpl16 · PQ059320.1 · 81,109–82,335 bp · −
rps3 · PQ059320.1 · 82,490–83,152 bp · −
rpl22 · PQ059320.1 · 83,154–83,609 bp · −
rps19 · PQ059320.1 · 83,669–83,947 bp · −
rpl2 · PQ059320.1 · 84,002–85,484 bp · −
rpl23 · PQ059320.1 · 85,503–85,784 bp · −
trnI-CAU · PQ059320.1 · 85,944–86,017 bp · −
trnL-CAA · PQ059320.1 · 93,498–93,578 bp · −
ndhB · PQ059320.1 · 94,121–96,278 bp · −
rps7 · PQ059320.1 · 96,607–97,074 bp · −
trnN-GUU · PQ059320.1 · 107,955–108,026 bp · −
ndhF · PQ059320.1 · 109,103–111,343 bp · −
ndhD · PQ059320.1 · 113,863–115,365 bp · −
psaC · PQ059320.1 · 115,485–115,730 bp · −
ndhE · PQ059320.1 · 115,987–116,292 bp · −
ndhG · PQ059320.1 · 116,513–117,043 bp · −
ndhI · PQ059320.1 · 117,408–117,908 bp · −
ndhA · PQ059320.1 · 117,989–120,063 bp · −
ndhH · PQ059320.1 · 120,065–121,246 bp · −
rps15 · PQ059320.1 · 121,349–121,621 bp · −
ycf1 · PQ059320.1 · 121,888–127,527 bp · −
trnR-ACG · PQ059320.1 · 128,364–128,437 bp · −
rrn5 · PQ059320.1 · 128,672–128,792 bp · −
rrn4.5 · PQ059320.1 · 129,040–129,142 bp · −
rrn23 · PQ059320.1 · 129,241–132,053 bp · −
trnA-UGC · PQ059320.1 · 132,223–133,103 bp · −
trnI-GAU · PQ059320.1 · 133,168–134,188 bp · −
ycf68 · PQ059320.1 · 133,794–134,033 bp · −
rrn16 · PQ059320.1 · 134,487–135,977 bp · −
trnV-GAC · PQ059320.1 · 136,205–136,276 bp · −
ycf15 · PQ059320.1 · 142,530–142,778 bp · −
ycf2 · PQ059320.1 · 142,869–149,666 bp · −
psbK · PQ059320.1 · 7,701–7,886 bp · +
psbI · PQ059320.1 · 8,279–8,389 bp · +
trnG-UCC · PQ059320.1 · 9,277–10,037 bp · +
trnR-UCU · PQ059320.1 · 10,208–10,279 bp · +
trnC-GCA · PQ059320.1 · 28,414–28,484 bp · +
petN · PQ059320.1 · 29,196–29,285 bp · +
trnT-GGU · PQ059320.1 · 31,900–31,971 bp · +
psbD · PQ059320.1 · 33,277–34,338 bp · +
psbC · PQ059320.1 · 34,286–35,707 bp · +
psbZ · PQ059320.1 · 36,354–36,542 bp · +
trnG-GCC · PQ059320.1 · 36,814–36,884 bp · +
trnS-GGA · PQ059320.1 · 45,629–45,715 bp · +
trnL-UAA · PQ059320.1 · 47,646–48,206 bp · +
trnF-GAA · PQ059320.1 · 48,513–48,585 bp · +
trnM-CAU · PQ059320.1 · 52,595–52,667 bp · +
rbcL · PQ059320.1 · 55,537–57,000 bp · +
accD · PQ059320.1 · 57,734–59,200 bp · +
psaI · PQ059320.1 · 59,758–59,868 bp · +
ycf4 · PQ059320.1 · 60,302–60,856 bp · +
cemA · PQ059320.1 · 61,575–62,174 bp · +
petA · PQ059320.1 · 62,381–63,343 bp · +
petL · PQ059320.1 · 66,042–66,137 bp · +
petG · PQ059320.1 · 66,313–66,426 bp · +
psaJ · PQ059320.1 · 67,134–67,268 bp · +
rpl33 · PQ059320.1 · 67,736–67,936 bp · +
rps18 · PQ059320.1 · 68,111–68,416 bp · +
rps12 · PQ059320.1 · 137,854–138,644 bp · +
psbB · PQ059320.1 · 72,475–74,001 bp · +
psbT · PQ059320.1 · 74,193–74,294 bp · +
psbH · PQ059320.1 · 74,603–74,824 bp · +
petB · PQ059320.1 · 74,949–76,318 bp · +
petD · PQ059320.1 · 76,507–77,708 bp · +
ycf2 · PQ059320.1 · 86,106–92,903 bp · +
ycf15 · PQ059320.1 · 92,994–93,242 bp · +
trnV-GAC · PQ059320.1 · 99,496–99,567 bp · +
rrn16 · PQ059320.1 · 99,795–101,285 bp · +
trnI-GAU · PQ059320.1 · 101,584–102,604 bp · +
trnA-UGC · PQ059320.1 · 102,669–103,549 bp · +
rrn23 · PQ059320.1 · 103,719–106,531 bp · +
rrn4.5 · PQ059320.1 · 106,630–106,732 bp · +
rrn5 · PQ059320.1 · 106,980–107,100 bp · +
trnR-ACG · PQ059320.1 · 107,335–107,408 bp · +
rpl32 · PQ059320.1 · 111,864–112,040 bp · +
trnL-UAG · PQ059320.1 · 112,485–112,564 bp · +
ccsA · PQ059320.1 · 112,648–113,622 bp · +
trnN-GUU · PQ059320.1 · 127,746–127,817 bp · +
rps7 · PQ059320.1 · 138,698–139,165 bp · +
ndhB · PQ059320.1 · 139,494–141,651 bp · +
trnL-CAA · PQ059320.1 · 142,194–142,274 bp · +
trnI-CAU · PQ059320.1 · 149,755–149,828 bp · +
rpl23 · PQ059320.1 · 149,988–150,269 bp · +
rpl2 · PQ059320.1 · 150,288–151,770 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria microviolacea
ANNOTATED PLASTOME
PQ059320.1
151,865 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37966 75932 113899 151865 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 370 1428 1059 Locate
trnK-UUU gene − 1670 4258 2589 Locate
matK gene − 1965 3500 1536 Locate
rps16 gene − 5137 6300 1164 Locate
trnQ-UUG gene − 7305 7376 72 Locate
psbK gene + 7701 7886 186 Locate
psbI gene + 8279 8389 111 Locate
trnS-GCU gene − 8508 8595 88 Locate
trnG-UCC gene + 9277 10037 761 Locate
trnR-UCU gene + 10208 10279 72 Locate
atpA gene − 10376 11899 1524 Locate
atpF gene − 11982 13209 1228 Locate
atpH gene − 13573 13818 246 Locate
atpI gene − 14814 15557 744 Locate
rps2 gene − 15906 16616 711 Locate
rpoC2 gene − 16833 21038 4206 Locate
rpoC1 gene − 21193 24014 2822 Locate
rpoB gene − 24041 27253 3213 Locate
trnC-GCA gene + 28414 28484 71 Locate
petN gene + 29196 29285 90 Locate
psbM gene − 30291 30395 105 Locate
trnD-GUC gene − 30922 30995 74 Locate
trnY-GUA gene − 31109 31192 84 Locate
trnE-UUC gene − 31252 31324 73 Locate
trnT-GGU gene + 31900 31971 72 Locate
psbD gene + 33277 34338 1062 Locate
psbC gene + 34286 35707 1422 Locate
trnS-UGA gene − 35943 36034 92 Locate
psbZ gene + 36354 36542 189 Locate
trnG-GCC gene + 36814 36884 71 Locate
trnfM-CAU gene − 37029 37102 74 Locate
rps14 gene − 37252 37554 303 Locate
psaB gene − 37682 39886 2205 Locate
psaA gene − 39912 42164 2253 Locate
ycf3 gene − 42833 44755 1923 Locate
trnS-GGA gene + 45629 45715 87 Locate
rps4 gene − 46001 46606 606 Locate
trnT-UGU gene − 46888 46960 73 Locate
trnL-UAA gene + 47646 48206 561 Locate
trnF-GAA gene + 48513 48585 73 Locate
ndhJ gene − 49234 49710 477 Locate
ndhK gene − 49818 50579 762 Locate
ndhC gene − 50549 50911 363 Locate
trnV-UAC gene − 51762 52414 653 Locate
trnM-CAU gene + 52595 52667 73 Locate
atpE gene − 52883 53284 402 Locate
atpB gene − 53281 54768 1488 Locate
rbcL gene + 55537 57000 1464 Locate
accD gene + 57734 59200 1467 Locate
psaI gene + 59758 59868 111 Locate
ycf4 gene + 60302 60856 555 Locate
cemA gene + 61575 62174 600 Locate
petA gene + 62381 63343 963 Locate
psbJ gene − 64352 64474 123 Locate
psbL gene − 64608 64724 117 Locate
psbF gene − 64748 64867 120 Locate
psbE gene − 64882 65133 252 Locate
petL gene + 66042 66137 96 Locate
petG gene + 66313 66426 114 Locate
trnW-CCA gene − 66545 66618 74 Locate
trnP-UGG gene − 66788 66861 74 Locate
psaJ gene + 67134 67268 135 Locate
rpl33 gene + 67736 67936 201 Locate
rps18 gene + 68111 68416 306 Locate
rpl20 gene − 68654 69040 387 Locate
rps12 gene − 69830 69955 126 Locate
clpP gene − 70098 72030 1933 Locate
psbB gene + 72475 74001 1527 Locate
psbT gene + 74193 74294 102 Locate
psbN gene − 74368 74499 132 Locate
psbH gene + 74603 74824 222 Locate
petB gene + 74949 76318 1370 Locate
petD gene + 76507 77708 1202 Locate
rpoA gene − 77871 78884 1014 Locate
rps11 gene − 78956 79372 417 Locate
rpl36 gene − 79474 79587 114 Locate
infA gene − 79683 79916 234 Locate
rps8 gene − 80036 80446 411 Locate
rpl14 gene − 80614 80982 369 Locate
rpl16 gene − 81109 82335 1227 Locate
rps3 gene − 82490 83152 663 Locate
rpl22 gene − 83154 83609 456 Locate
rps19 gene − 83669 83947 279 Locate
rpl2 gene − 84002 85484 1483 Locate
rpl23 gene − 85503 85784 282 Locate
trnI-CAU gene − 85944 86017 74 Locate
ycf2 gene + 86106 92903 6798 Locate
ycf15 gene + 92994 93242 249 Locate
trnL-CAA gene − 93498 93578 81 Locate
ndhB gene − 94121 96278 2158 Locate
rps7 gene − 96607 97074 468 Locate
rps12 gene − 97128 97918 791 Locate
trnV-GAC gene + 99496 99567 72 Locate
rrn16 gene + 99795 101285 1491 Locate
trnI-GAU gene + 101584 102604 1021 Locate
trnA-UGC gene + 102669 103549 881 Locate
rrn23 gene + 103719 106531 2813 Locate
rrn4.5 gene + 106630 106732 103 Locate
rrn5 gene + 106980 107100 121 Locate
trnR-ACG gene + 107335 107408 74 Locate
trnN-GUU gene − 107955 108026 72 Locate
ndhF gene − 109103 111343 2241 Locate
rpl32 gene + 111864 112040 177 Locate
trnL-UAG gene + 112485 112564 80 Locate
ccsA gene + 112648 113622 975 Locate
ndhD gene − 113863 115365 1503 Locate
psaC gene − 115485 115730 246 Locate
ndhE gene − 115987 116292 306 Locate
ndhG gene − 116513 117043 531 Locate
ndhI gene − 117408 117908 501 Locate
ndhA gene − 117989 120063 2075 Locate
ndhH gene − 120065 121246 1182 Locate
rps15 gene − 121349 121621 273 Locate
ycf1 gene − 121888 127527 5640 Locate
trnN-GUU gene + 127746 127817 72 Locate
trnR-ACG gene − 128364 128437 74 Locate
rrn5 gene − 128672 128792 121 Locate
rrn4.5 gene − 129040 129142 103 Locate
rrn23 gene − 129241 132053 2813 Locate
trnA-UGC gene − 132223 133103 881 Locate
trnI-GAU gene − 133168 134188 1021 Locate
ycf68 gene − 133794 134033 240 Locate
rrn16 gene − 134487 135977 1491 Locate
trnV-GAC gene − 136205 136276 72 Locate
rps12 gene + 137854 138644 791 Locate
rps7 gene + 138698 139165 468 Locate
ndhB gene + 139494 141651 2158 Locate
trnL-CAA gene + 142194 142274 81 Locate
ycf15 gene − 142530 142778 249 Locate
ycf2 gene − 142869 149666 6798 Locate
trnI-CAU gene + 149755 149828 74 Locate
rpl23 gene + 149988 150269 282 Locate
rpl2 gene + 150288 151770 1483 Locate
Status Available
Accession PQ059320.1
Length 151,865 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources