Scutellaria minor chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059360.1 · 111–184 bp · −
psbA · PQ059360.1 · 488–1,546 bp · −
trnK-UUU · PQ059360.1 · 1,779–4,361 bp · −
matK · PQ059360.1 · 2,069–3,604 bp · −
rps16 · PQ059360.1 · 5,264–6,433 bp · −
trnQ-UUG · PQ059360.1 · 7,564–7,635 bp · −
trnS-GCU · PQ059360.1 · 8,767–8,854 bp · −
atpA · PQ059360.1 · 10,643–12,166 bp · −
atpF · PQ059360.1 · 12,240–13,468 bp · −
atpH · PQ059360.1 · 13,838–14,083 bp · −
atpI · PQ059360.1 · 15,086–15,829 bp · −
rps2 · PQ059360.1 · 16,178–16,888 bp · −
rpoC2 · PQ059360.1 · 17,105–21,310 bp · −
rpoC1 · PQ059360.1 · 21,465–24,301 bp · −
rpoB · PQ059360.1 · 24,328–27,540 bp · −
psbM · PQ059360.1 · 30,585–30,689 bp · −
trnD-GUC · PQ059360.1 · 31,215–31,288 bp · −
trnY-GUA · PQ059360.1 · 31,402–31,485 bp · −
trnE-UUC · PQ059360.1 · 31,545–31,617 bp · −
trnS-UGA · PQ059360.1 · 36,241–36,332 bp · −
trnfM-CAU · PQ059360.1 · 37,327–37,400 bp · −
rps14 · PQ059360.1 · 37,550–37,852 bp · −
psaB · PQ059360.1 · 37,980–40,184 bp · −
psaA · PQ059360.1 · 40,210–42,462 bp · −
ycf3 · PQ059360.1 · 43,131–45,053 bp · −
rps4 · PQ059360.1 · 46,312–46,917 bp · −
trnT-UGU · PQ059360.1 · 47,245–47,317 bp · −
ndhJ · PQ059360.1 · 49,603–50,079 bp · −
ndhK · PQ059360.1 · 50,187–50,864 bp · −
ndhC · PQ059360.1 · 50,917–51,279 bp · −
trnV-UAC · PQ059360.1 · 52,277–52,929 bp · −
atpE · PQ059360.1 · 53,392–53,793 bp · −
atpB · PQ059360.1 · 53,790–55,277 bp · −
psbJ · PQ059360.1 · 65,021–65,143 bp · −
psbL · PQ059360.1 · 65,277–65,393 bp · −
psbF · PQ059360.1 · 65,417–65,536 bp · −
psbE · PQ059360.1 · 65,551–65,802 bp · −
trnW-CCA · PQ059360.1 · 67,212–67,285 bp · −
trnP-UGG · PQ059360.1 · 67,455–67,528 bp · −
rpl20 · PQ059360.1 · 69,334–69,720 bp · −
rps12 · PQ059360.1 · 70,520–70,633 bp · −
rps12 · PQ059360.1 · 97,866–98,656 bp · −
clpP · PQ059360.1 · 70,776–72,709 bp · −
psbN · PQ059360.1 · 75,077–75,208 bp · −
rpoA · PQ059360.1 · 78,580–79,593 bp · −
rps11 · PQ059360.1 · 79,665–80,081 bp · −
rpl36 · PQ059360.1 · 80,183–80,296 bp · −
infA · PQ059360.1 · 80,392–80,625 bp · −
rps8 · PQ059360.1 · 80,745–81,155 bp · −
rpl14 · PQ059360.1 · 81,323–81,691 bp · −
rpl16 · PQ059360.1 · 81,818–83,061 bp · −
rps3 · PQ059360.1 · 83,216–83,878 bp · −
rpl22 · PQ059360.1 · 83,880–84,335 bp · −
rps19 · PQ059360.1 · 84,395–84,673 bp · −
rpl2 · PQ059360.1 · 84,728–86,210 bp · −
rpl23 · PQ059360.1 · 86,229–86,510 bp · −
trnI-CAU · PQ059360.1 · 86,670–86,743 bp · −
trnL-CAA · PQ059360.1 · 94,236–94,316 bp · −
ndhB · PQ059360.1 · 94,859–97,016 bp · −
rps7 · PQ059360.1 · 97,345–97,812 bp · −
trnN-GUU · PQ059360.1 · 108,700–108,771 bp · −
ndhF · PQ059360.1 · 109,848–112,088 bp · −
ndhD · PQ059360.1 · 114,593–116,116 bp · −
psaC · PQ059360.1 · 116,215–116,460 bp · −
ndhE · PQ059360.1 · 116,717–117,022 bp · −
ndhG · PQ059360.1 · 117,253–117,783 bp · −
ndhI · PQ059360.1 · 118,148–118,648 bp · −
ndhA · PQ059360.1 · 118,729–120,828 bp · −
ndhH · PQ059360.1 · 120,830–122,011 bp · −
rps15 · PQ059360.1 · 122,114–122,386 bp · −
ycf1 · PQ059360.1 · 122,657–128,311 bp · −
trnR-ACG · PQ059360.1 · 129,148–129,221 bp · −
rrn5 · PQ059360.1 · 129,456–129,576 bp · −
rrn4.5 · PQ059360.1 · 129,824–129,926 bp · −
trnA-UGC · PQ059360.1 · 132,967–133,853 bp · −
trnI-GAU · PQ059360.1 · 133,918–134,938 bp · −
ycf68 · PQ059360.1 · 134,544–134,783 bp · −
rrn16 · PQ059360.1 · 135,237–136,727 bp · −
trnV-GAC · PQ059360.1 · 136,955–137,026 bp · −
ycf15 · PQ059360.1 · 143,280–143,528 bp · −
ycf2 · PQ059360.1 · 143,619–150,428 bp · −
psbK · PQ059360.1 · 7,960–8,145 bp · +
psbI · PQ059360.1 · 8,537–8,647 bp · +
trnG-UCC · PQ059360.1 · 9,541–10,300 bp · +
trnR-UCU · PQ059360.1 · 10,475–10,546 bp · +
trnC-GCA · PQ059360.1 · 28,705–28,775 bp · +
petN · PQ059360.1 · 29,485–29,574 bp · +
trnT-GGU · PQ059360.1 · 32,193–32,264 bp · +
psbD · PQ059360.1 · 33,574–34,635 bp · +
psbC · PQ059360.1 · 34,583–36,004 bp · +
psbZ · PQ059360.1 · 36,652–36,840 bp · +
trnG-GCC · PQ059360.1 · 37,112–37,182 bp · +
trnS-GGA · PQ059360.1 · 45,940–46,026 bp · +
trnL-UAA · PQ059360.1 · 48,007–48,575 bp · +
trnF-GAA · PQ059360.1 · 48,882–48,954 bp · +
trnM-CAU · PQ059360.1 · 53,110–53,182 bp · +
rbcL · PQ059360.1 · 56,029–57,492 bp · +
accD · PQ059360.1 · 58,208–59,674 bp · +
psaI · PQ059360.1 · 60,391–60,501 bp · +
ycf4 · PQ059360.1 · 60,935–61,489 bp · +
cemA · PQ059360.1 · 62,238–62,837 bp · +
petA · PQ059360.1 · 63,044–64,006 bp · +
petL · PQ059360.1 · 66,710–66,805 bp · +
petG · PQ059360.1 · 66,980–67,093 bp · +
psaJ · PQ059360.1 · 67,801–67,935 bp · +
rpl33 · PQ059360.1 · 68,407–68,607 bp · +
rps18 · PQ059360.1 · 68,789–69,094 bp · +
rps12 · PQ059360.1 · 138,604–139,394 bp · +
psbB · PQ059360.1 · 73,184–74,710 bp · +
psbT · PQ059360.1 · 74,902–75,003 bp · +
psbH · PQ059360.1 · 75,312–75,533 bp · +
petB · PQ059360.1 · 75,658–77,027 bp · +
petD · PQ059360.1 · 77,216–78,417 bp · +
ycf2 · PQ059360.1 · 86,832–93,641 bp · +
ycf15 · PQ059360.1 · 93,732–93,980 bp · +
trnV-GAC · PQ059360.1 · 100,234–100,305 bp · +
rrn16 · PQ059360.1 · 100,533–102,023 bp · +
trnI-GAU · PQ059360.1 · 102,322–103,342 bp · +
trnA-UGC · PQ059360.1 · 103,407–104,293 bp · +
rrn23 · PQ059360.1 · 104,463–107,276 bp · +
rrn4.5 · PQ059360.1 · 107,375–107,477 bp · +
rrn5 · PQ059360.1 · 107,725–107,845 bp · +
trnR-ACG · PQ059360.1 · 108,080–108,153 bp · +
rpl32 · PQ059360.1 · 112,605–112,781 bp · +
trnL-UAG · PQ059360.1 · 113,210–113,289 bp · +
ccsA · PQ059360.1 · 113,387–114,361 bp · +
trnN-GUU · PQ059360.1 · 128,530–128,601 bp · +
rps7 · PQ059360.1 · 139,448–139,915 bp · +
ndhB · PQ059360.1 · 140,244–142,401 bp · +
trnL-CAA · PQ059360.1 · 142,944–143,024 bp · +
trnI-CAU · PQ059360.1 · 150,517–150,590 bp · +
rpl23 · PQ059360.1 · 150,750–151,031 bp · +
rpl2 · PQ059360.1 · 151,050–152,532 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria minor
ANNOTATED PLASTOME
PQ059360.1
152,627 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38157 76314 114470 152627 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 111 184 74 Locate
psbA gene − 488 1546 1059 Locate
trnK-UUU gene − 1779 4361 2583 Locate
matK gene − 2069 3604 1536 Locate
rps16 gene − 5264 6433 1170 Locate
trnQ-UUG gene − 7564 7635 72 Locate
psbK gene + 7960 8145 186 Locate
psbI gene + 8537 8647 111 Locate
trnS-GCU gene − 8767 8854 88 Locate
trnG-UCC gene + 9541 10300 760 Locate
trnR-UCU gene + 10475 10546 72 Locate
atpA gene − 10643 12166 1524 Locate
atpF gene − 12240 13468 1229 Locate
atpH gene − 13838 14083 246 Locate
atpI gene − 15086 15829 744 Locate
rps2 gene − 16178 16888 711 Locate
rpoC2 gene − 17105 21310 4206 Locate
rpoC1 gene − 21465 24301 2837 Locate
rpoB gene − 24328 27540 3213 Locate
trnC-GCA gene + 28705 28775 71 Locate
petN gene + 29485 29574 90 Locate
psbM gene − 30585 30689 105 Locate
trnD-GUC gene − 31215 31288 74 Locate
trnY-GUA gene − 31402 31485 84 Locate
trnE-UUC gene − 31545 31617 73 Locate
trnT-GGU gene + 32193 32264 72 Locate
psbD gene + 33574 34635 1062 Locate
psbC gene + 34583 36004 1422 Locate
trnS-UGA gene − 36241 36332 92 Locate
psbZ gene + 36652 36840 189 Locate
trnG-GCC gene + 37112 37182 71 Locate
trnfM-CAU gene − 37327 37400 74 Locate
rps14 gene − 37550 37852 303 Locate
psaB gene − 37980 40184 2205 Locate
psaA gene − 40210 42462 2253 Locate
ycf3 gene − 43131 45053 1923 Locate
trnS-GGA gene + 45940 46026 87 Locate
rps4 gene − 46312 46917 606 Locate
trnT-UGU gene − 47245 47317 73 Locate
trnL-UAA gene + 48007 48575 569 Locate
trnF-GAA gene + 48882 48954 73 Locate
ndhJ gene − 49603 50079 477 Locate
ndhK gene − 50187 50864 678 Locate
ndhC gene − 50917 51279 363 Locate
trnV-UAC gene − 52277 52929 653 Locate
trnM-CAU gene + 53110 53182 73 Locate
atpE gene − 53392 53793 402 Locate
atpB gene − 53790 55277 1488 Locate
rbcL gene + 56029 57492 1464 Locate
accD gene + 58208 59674 1467 Locate
psaI gene + 60391 60501 111 Locate
ycf4 gene + 60935 61489 555 Locate
cemA gene + 62238 62837 600 Locate
petA gene + 63044 64006 963 Locate
psbJ gene − 65021 65143 123 Locate
psbL gene − 65277 65393 117 Locate
psbF gene − 65417 65536 120 Locate
psbE gene − 65551 65802 252 Locate
petL gene + 66710 66805 96 Locate
petG gene + 66980 67093 114 Locate
trnW-CCA gene − 67212 67285 74 Locate
trnP-UGG gene − 67455 67528 74 Locate
psaJ gene + 67801 67935 135 Locate
rpl33 gene + 68407 68607 201 Locate
rps18 gene + 68789 69094 306 Locate
rpl20 gene − 69334 69720 387 Locate
rps12 gene − 70520 70633 114 Locate
clpP gene − 70776 72709 1934 Locate
psbB gene + 73184 74710 1527 Locate
psbT gene + 74902 75003 102 Locate
psbN gene − 75077 75208 132 Locate
psbH gene + 75312 75533 222 Locate
petB gene + 75658 77027 1370 Locate
petD gene + 77216 78417 1202 Locate
rpoA gene − 78580 79593 1014 Locate
rps11 gene − 79665 80081 417 Locate
rpl36 gene − 80183 80296 114 Locate
infA gene − 80392 80625 234 Locate
rps8 gene − 80745 81155 411 Locate
rpl14 gene − 81323 81691 369 Locate
rpl16 gene − 81818 83061 1244 Locate
rps3 gene − 83216 83878 663 Locate
rpl22 gene − 83880 84335 456 Locate
rps19 gene − 84395 84673 279 Locate
rpl2 gene − 84728 86210 1483 Locate
rpl23 gene − 86229 86510 282 Locate
trnI-CAU gene − 86670 86743 74 Locate
ycf2 gene + 86832 93641 6810 Locate
ycf15 gene + 93732 93980 249 Locate
trnL-CAA gene − 94236 94316 81 Locate
ndhB gene − 94859 97016 2158 Locate
rps7 gene − 97345 97812 468 Locate
rps12 gene − 97866 98656 791 Locate
trnV-GAC gene + 100234 100305 72 Locate
rrn16 gene + 100533 102023 1491 Locate
trnI-GAU gene + 102322 103342 1021 Locate
trnA-UGC gene + 103407 104293 887 Locate
rrn23 gene + 104463 107276 2814 Locate
rrn4.5 gene + 107375 107477 103 Locate
rrn5 gene + 107725 107845 121 Locate
trnR-ACG gene + 108080 108153 74 Locate
trnN-GUU gene − 108700 108771 72 Locate
ndhF gene − 109848 112088 2241 Locate
rpl32 gene + 112605 112781 177 Locate
trnL-UAG gene + 113210 113289 80 Locate
ccsA gene + 113387 114361 975 Locate
ndhD gene − 114593 116116 1524 Locate
psaC gene − 116215 116460 246 Locate
ndhE gene − 116717 117022 306 Locate
ndhG gene − 117253 117783 531 Locate
ndhI gene − 118148 118648 501 Locate
ndhA gene − 118729 120828 2100 Locate
ndhH gene − 120830 122011 1182 Locate
rps15 gene − 122114 122386 273 Locate
ycf1 gene − 122657 128311 5655 Locate
trnN-GUU gene + 128530 128601 72 Locate
trnR-ACG gene − 129148 129221 74 Locate
rrn5 gene − 129456 129576 121 Locate
rrn4.5 gene − 129824 129926 103 Locate
trnA-UGC gene − 132967 133853 887 Locate
trnI-GAU gene − 133918 134938 1021 Locate
ycf68 gene − 134544 134783 240 Locate
rrn16 gene − 135237 136727 1491 Locate
trnV-GAC gene − 136955 137026 72 Locate
rps12 gene + 138604 139394 791 Locate
rps7 gene + 139448 139915 468 Locate
ndhB gene + 140244 142401 2158 Locate
trnL-CAA gene + 142944 143024 81 Locate
ycf15 gene − 143280 143528 249 Locate
ycf2 gene − 143619 150428 6810 Locate
trnI-CAU gene + 150517 150590 74 Locate
rpl23 gene + 150750 151031 282 Locate
rpl2 gene + 151050 152532 1483 Locate
Status Available
Accession PQ059360.1
Length 152,627 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 7
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources