Scutellaria mollis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420947.1 · 10–83 bp · −
psbA · MW420947.1 · 387–1,445 bp · −
trnK-UUU · MW420947.1 · 1,690–4,269 bp · −
matK · MW420947.1 · 1,981–3,516 bp · −
rps16 · MW420947.1 · 5,175–6,340 bp · −
trnQ-UUC · MW420947.1 · 7,461–7,532 bp · −
trnS-GCU · MW420947.1 · 8,653–8,740 bp · −
atpA · MW420947.1 · 10,518–12,041 bp · −
atpF · MW420947.1 · 12,124–13,350 bp · −
atpH · MW420947.1 · 13,709–13,954 bp · −
atpI · MW420947.1 · 14,943–15,686 bp · −
rps2 · MW420947.1 · 16,034–16,744 bp · −
rpoC2 · MW420947.1 · 16,961–21,166 bp · −
rpoC1 · MW420947.1 · 21,321–24,157 bp · −
rpoB · MW420947.1 · 24,184–27,492 bp · −
psbM · MW420947.1 · 30,520–30,624 bp · −
trnD-GUC · MW420947.1 · 31,151–31,224 bp · −
trnY-GUA · MW420947.1 · 31,338–31,421 bp · −
trnE-UUC · MW420947.1 · 31,481–31,553 bp · −
trnS-UCA · MW420947.1 · 36,190–36,282 bp · −
trnfM-CAU · MW420947.1 · 37,286–37,359 bp · −
rps14 · MW420947.1 · 37,509–37,811 bp · −
psaB · MW420947.1 · 37,939–40,143 bp · −
psaA · MW420947.1 · 40,169–42,421 bp · −
ycf3 · MW420947.1 · 43,094–45,016 bp · −
rps4 · MW420947.1 · 46,272–46,877 bp · −
trnT-UGU · MW420947.1 · 47,231–47,303 bp · −
ndhJ · MW420947.1 · 49,579–50,055 bp · −
ndhK · MW420947.1 · 50,163–50,840 bp · −
ndhC · MW420947.1 · 50,893–51,255 bp · −
trnV-UAC · MW420947.1 · 52,253–52,905 bp · −
atpE · MW420947.1 · 53,368–53,769 bp · −
atpB · MW420947.1 · 53,766–55,253 bp · −
pabJ · MW420947.1 · 65,017–65,139 bp · −
psbL · MW420947.1 · 65,273–65,389 bp · −
psbF · MW420947.1 · 65,413–65,532 bp · −
psbE · MW420947.1 · 65,547–65,798 bp · −
trnW-CCA · MW420947.1 · 67,210–67,283 bp · −
trnP-UGG · MW420947.1 · 67,453–67,526 bp · −
rpl20 · MW420947.1 · 69,322–69,708 bp · −
rps12 · MW420947.1 · 70,496–70,621 bp · −
rps12 · MW420947.1 · 97,856–98,646 bp · −
clpP · MW420947.1 · 70,764–72,697 bp · −
psbN · MW420947.1 · 75,075–75,206 bp · −
rpoA · MW420947.1 · 78,579–79,592 bp · −
rps11 · MW420947.1 · 79,664–80,080 bp · −
rpl36 · MW420947.1 · 80,182–80,295 bp · −
infA · MW420947.1 · 80,391–80,624 bp · −
rps8 · MW420947.1 · 80,746–81,156 bp · −
rpl14 · MW420947.1 · 81,331–81,699 bp · −
rpl16 · MW420947.1 · 81,826–83,051 bp · −
rps3 · MW420947.1 · 83,206–83,868 bp · −
rpl22 · MW420947.1 · 83,870–84,325 bp · −
rps19 · MW420947.1 · 84,385–84,663 bp · −
rpl2 · MW420947.1 · 84,718–86,200 bp · −
rpl23 · MW420947.1 · 86,219–86,500 bp · −
trnI-CAU · MW420947.1 · 86,660–86,733 bp · −
trnL-CAA · MW420947.1 · 94,226–94,306 bp · −
ndhB · MW420947.1 · 94,849–97,060 bp · −
rps7 · MW420947.1 · 97,335–97,802 bp · −
ndhF · MW420947.1 · 109,834–112,074 bp · −
ndhD · MW420947.1 · 114,600–116,129 bp · −
psaC · MW420947.1 · 116,221–116,466 bp · −
ndhE · MW420947.1 · 116,723–117,028 bp · −
ndhG · MW420947.1 · 117,254–117,784 bp · −
ndhI · MW420947.1 · 118,150–118,650 bp · −
ndhA · MW420947.1 · 118,731–120,823 bp · −
ndhH · MW420947.1 · 120,825–122,006 bp · −
rps15 · MW420947.1 · 122,109–122,381 bp · −
ycf1 · MW420947.1 · 122,656–128,094 bp · −
trnR-ACG · MW420947.1 · 129,042–129,115 bp · −
rrn5 · MW420947.1 · 129,350–129,470 bp · −
rrn4.5 · MW420947.1 · 129,718–129,820 bp · −
rrn23 · MW420947.1 · 129,919–132,731 bp · −
trnA-UGC · MW420947.1 · 132,901–133,784 bp · −
trnI-GAU · MW420947.1 · 133,850–134,869 bp · −
rrn16 · MW420947.1 · 135,168–136,658 bp · −
trnV-GAC · MW420947.1 · 136,886–136,957 bp · −
ycf15 · MW420947.1 · 143,211–143,408 bp · −
ycf2 · MW420947.1 · 143,550–150,359 bp · −
psbK · MW420947.1 · 7,857–8,042 bp · +
psbI · MW420947.1 · 8,425–8,535 bp · +
trnG-CGA · MW420947.1 · 9,428–10,175 bp · +
trnR-UCU · MW420947.1 · 10,350–10,421 bp · +
trnC-GCA · MW420947.1 · 28,667–28,737 bp · +
petN · MW420947.1 · 29,448–29,537 bp · +
trnT-GGU · MW420947.1 · 32,136–32,207 bp · +
psbD · MW420947.1 · 33,518–34,579 bp · +
psbC · MW420947.1 · 34,527–35,948 bp · +
psbZ · MW420947.1 · 36,592–36,780 bp · +
trnG-GCC · MW420947.1 · 37,052–37,122 bp · +
trnS-GGA · MW420947.1 · 45,900–45,986 bp · +
trnL-UAA · MW420947.1 · 47,986–48,553 bp · +
trnF-GAA · MW420947.1 · 48,858–48,930 bp · +
trnM-CAU · MW420947.1 · 53,086–53,158 bp · +
rbcL · MW420947.1 · 56,025–57,467 bp · +
accD · MW420947.1 · 58,197–59,663 bp · +
psaI · MW420947.1 · 60,381–60,491 bp · +
ycf4 · MW420947.1 · 60,925–61,479 bp · +
cemA · MW420947.1 · 62,161–62,820 bp · +
petA · MW420947.1 · 63,027–63,989 bp · +
petL · MW420947.1 · 66,706–66,801 bp · +
petG · MW420947.1 · 66,978–67,091 bp · +
psbJ · MW420947.1 · 67,799–67,933 bp · +
rpl33 · MW420947.1 · 68,405–68,605 bp · +
rps18 · MW420947.1 · 68,780–69,085 bp · +
rps12 · MW420947.1 · 138,535–139,325 bp · +
psbB · MW420947.1 · 73,182–74,708 bp · +
psbT · MW420947.1 · 74,900–75,001 bp · +
psbH · MW420947.1 · 75,310–75,531 bp · +
petB · MW420947.1 · 75,656–77,026 bp · +
petD · MW420947.1 · 77,215–78,416 bp · +
ycf2 · MW420947.1 · 86,822–93,631 bp · +
ycf15 · MW420947.1 · 93,773–93,970 bp · +
trnV-GAC · MW420947.1 · 100,224–100,295 bp · +
rrn16 · MW420947.1 · 100,523–102,013 bp · +
trnI-GAU · MW420947.1 · 102,312–103,331 bp · +
trnA-UGC · MW420947.1 · 103,397–104,280 bp · +
rrn23 · MW420947.1 · 104,450–107,262 bp · +
rrn4.5 · MW420947.1 · 107,361–107,463 bp · +
rrn5 · MW420947.1 · 107,711–107,831 bp · +
trnR-ACG · MW420947.1 · 108,066–108,139 bp · +
trnN-GUU · MW420947.1 · 108,686–108,757 bp · +
rpl32 · MW420947.1 · 112,605–112,781 bp · +
trnL-UAG · MW420947.1 · 113,217–113,296 bp · +
ccsA · MW420947.1 · 113,393–114,367 bp · +
trnN-GUU · MW420947.1 · 128,424–128,495 bp · +
rps7 · MW420947.1 · 139,379–139,846 bp · +
ndhB · MW420947.1 · 140,121–142,332 bp · +
trnL-CAA · MW420947.1 · 142,875–142,955 bp · +
trnI-CAU · MW420947.1 · 150,448–150,521 bp · +
rpl23 · MW420947.1 · 150,681–150,962 bp · +
rpl2 · MW420947.1 · 150,981–152,463 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria mollis
ANNOTATED PLASTOME
MW420947.1
152,558 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38140 76279 114418 152558 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 387 1445 1059 Locate
trnK-UUU gene − 1690 4269 2580 Locate
matK gene − 1981 3516 1536 Locate
rps16 gene − 5175 6340 1166 Locate
trnQ-UUC gene − 7461 7532 72 Locate
psbK gene + 7857 8042 186 Locate
psbI gene + 8425 8535 111 Locate
trnS-GCU gene − 8653 8740 88 Locate
trnG-CGA gene + 9428 10175 748 Locate
trnR-UCU gene + 10350 10421 72 Locate
atpA gene − 10518 12041 1524 Locate
atpF gene − 12124 13350 1227 Locate
atpH gene − 13709 13954 246 Locate
atpI gene − 14943 15686 744 Locate
rps2 gene − 16034 16744 711 Locate
rpoC2 gene − 16961 21166 4206 Locate
rpoC1 gene − 21321 24157 2837 Locate
rpoB gene − 24184 27492 3309 Locate
trnC-GCA gene + 28667 28737 71 Locate
petN gene + 29448 29537 90 Locate
psbM gene − 30520 30624 105 Locate
trnD-GUC gene − 31151 31224 74 Locate
trnY-GUA gene − 31338 31421 84 Locate
trnE-UUC gene − 31481 31553 73 Locate
trnT-GGU gene + 32136 32207 72 Locate
psbD gene + 33518 34579 1062 Locate
psbC gene + 34527 35948 1422 Locate
trnS-UCA gene − 36190 36282 93 Locate
psbZ gene + 36592 36780 189 Locate
trnG-GCC gene + 37052 37122 71 Locate
trnfM-CAU gene − 37286 37359 74 Locate
rps14 gene − 37509 37811 303 Locate
psaB gene − 37939 40143 2205 Locate
psaA gene − 40169 42421 2253 Locate
ycf3 gene − 43094 45016 1923 Locate
trnS-GGA gene + 45900 45986 87 Locate
rps4 gene − 46272 46877 606 Locate
trnT-UGU gene − 47231 47303 73 Locate
trnL-UAA gene + 47986 48553 568 Locate
trnF-GAA gene + 48858 48930 73 Locate
ndhJ gene − 49579 50055 477 Locate
ndhK gene − 50163 50840 678 Locate
ndhC gene − 50893 51255 363 Locate
trnV-UAC gene − 52253 52905 653 Locate
trnM-CAU gene + 53086 53158 73 Locate
atpE gene − 53368 53769 402 Locate
atpB gene − 53766 55253 1488 Locate
rbcL gene + 56025 57467 1443 Locate
accD gene + 58197 59663 1467 Locate
psaI gene + 60381 60491 111 Locate
ycf4 gene + 60925 61479 555 Locate
cemA gene + 62161 62820 660 Locate
petA gene + 63027 63989 963 Locate
pabJ gene − 65017 65139 123 Locate
psbL gene − 65273 65389 117 Locate
psbF gene − 65413 65532 120 Locate
psbE gene − 65547 65798 252 Locate
petL gene + 66706 66801 96 Locate
petG gene + 66978 67091 114 Locate
trnW-CCA gene − 67210 67283 74 Locate
trnP-UGG gene − 67453 67526 74 Locate
psbJ gene + 67799 67933 135 Locate
rpl33 gene + 68405 68605 201 Locate
rps18 gene + 68780 69085 306 Locate
rpl20 gene − 69322 69708 387 Locate
rps12 gene − 70496 70621 126 Locate
clpP gene − 70764 72697 1934 Locate
psbB gene + 73182 74708 1527 Locate
psbT gene + 74900 75001 102 Locate
psbN gene − 75075 75206 132 Locate
psbH gene + 75310 75531 222 Locate
petB gene + 75656 77026 1371 Locate
petD gene + 77215 78416 1202 Locate
rpoA gene − 78579 79592 1014 Locate
rps11 gene − 79664 80080 417 Locate
rpl36 gene − 80182 80295 114 Locate
infA gene − 80391 80624 234 Locate
rps8 gene − 80746 81156 411 Locate
rpl14 gene − 81331 81699 369 Locate
rpl16 gene − 81826 83051 1226 Locate
rps3 gene − 83206 83868 663 Locate
rpl22 gene − 83870 84325 456 Locate
rps19 gene − 84385 84663 279 Locate
rpl2 gene − 84718 86200 1483 Locate
rpl23 gene − 86219 86500 282 Locate
trnI-CAU gene − 86660 86733 74 Locate
ycf2 gene + 86822 93631 6810 Locate
ycf15 gene + 93773 93970 198 Locate
trnL-CAA gene − 94226 94306 81 Locate
ndhB gene − 94849 97060 2212 Locate
rps7 gene − 97335 97802 468 Locate
rps12 gene − 97856 98646 791 Locate
trnV-GAC gene + 100224 100295 72 Locate
rrn16 gene + 100523 102013 1491 Locate
trnI-GAU gene + 102312 103331 1020 Locate
trnA-UGC gene + 103397 104280 884 Locate
rrn23 gene + 104450 107262 2813 Locate
rrn4.5 gene + 107361 107463 103 Locate
rrn5 gene + 107711 107831 121 Locate
trnR-ACG gene + 108066 108139 74 Locate
trnN-GUU gene + 108686 108757 72 Locate
ndhF gene − 109834 112074 2241 Locate
rpl32 gene + 112605 112781 177 Locate
trnL-UAG gene + 113217 113296 80 Locate
ccsA gene + 113393 114367 975 Locate
ndhD gene − 114600 116129 1530 Locate
psaC gene − 116221 116466 246 Locate
ndhE gene − 116723 117028 306 Locate
ndhG gene − 117254 117784 531 Locate
ndhI gene − 118150 118650 501 Locate
ndhA gene − 118731 120823 2093 Locate
ndhH gene − 120825 122006 1182 Locate
rps15 gene − 122109 122381 273 Locate
ycf1 gene − 122656 128094 5439 Locate
trnN-GUU gene + 128424 128495 72 Locate
trnR-ACG gene − 129042 129115 74 Locate
rrn5 gene − 129350 129470 121 Locate
rrn4.5 gene − 129718 129820 103 Locate
rrn23 gene − 129919 132731 2813 Locate
trnA-UGC gene − 132901 133784 884 Locate
trnI-GAU gene − 133850 134869 1020 Locate
rrn16 gene − 135168 136658 1491 Locate
trnV-GAC gene − 136886 136957 72 Locate
rps12 gene + 138535 139325 791 Locate
rps7 gene + 139379 139846 468 Locate
ndhB gene + 140121 142332 2212 Locate
trnL-CAA gene + 142875 142955 81 Locate
ycf15 gene − 143211 143408 198 Locate
ycf2 gene − 143550 150359 6810 Locate
trnI-CAU gene + 150448 150521 74 Locate
rpl23 gene + 150681 150962 282 Locate
rpl2 gene + 150981 152463 1483 Locate
Status Available
Accession MW420947.1
Length 152,558 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources