Scutellaria moniliorhiza chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420954.1 · 3–76 bp · −
psbA · MW420954.1 · 380–1,438 bp · −
trnK-UUU · MW420954.1 · 1,676–4,255 bp · −
matK · MW420954.1 · 1,967–3,502 bp · −
rps16 · MW420954.1 · 5,163–6,331 bp · −
trnQ-UUC · MW420954.1 · 7,462–7,533 bp · −
trnS-GCU · MW420954.1 · 8,662–8,749 bp · −
atpA · MW420954.1 · 10,539–12,062 bp · −
atpF · MW420954.1 · 12,136–13,363 bp · −
atpH · MW420954.1 · 13,732–13,977 bp · −
atpI · MW420954.1 · 14,974–15,717 bp · −
rps2 · MW420954.1 · 16,066–16,776 bp · −
rpoC2 · MW420954.1 · 16,993–21,198 bp · −
rpoC1 · MW420954.1 · 21,353–24,189 bp · −
rpoB · MW420954.1 · 24,216–27,428 bp · −
psbM · MW420954.1 · 30,489–30,593 bp · −
trnD-GUC · MW420954.1 · 31,119–31,192 bp · −
trnY-GUA · MW420954.1 · 31,306–31,389 bp · −
trnE-UUC · MW420954.1 · 31,449–31,521 bp · −
trnS-UCA · MW420954.1 · 36,150–36,242 bp · −
trnfM-CAU · MW420954.1 · 37,238–37,311 bp · −
rps14 · MW420954.1 · 37,461–37,763 bp · −
psaB · MW420954.1 · 37,891–40,095 bp · −
psaA · MW420954.1 · 40,121–42,373 bp · −
ycf3 · MW420954.1 · 43,048–44,971 bp · −
rps4 · MW420954.1 · 46,229–46,834 bp · −
trnT-UGU · MW420954.1 · 47,173–47,245 bp · −
ndhJ · MW420954.1 · 49,527–50,003 bp · −
ndhK · MW420954.1 · 50,111–50,788 bp · −
ndhC · MW420954.1 · 50,841–51,203 bp · −
trnV-UAC · MW420954.1 · 52,200–52,852 bp · −
atpE · MW420954.1 · 53,315–53,716 bp · −
atpB · MW420954.1 · 53,713–55,200 bp · −
pabJ · MW420954.1 · 64,956–65,078 bp · −
psbL · MW420954.1 · 65,212–65,328 bp · −
psbF · MW420954.1 · 65,352–65,471 bp · −
psbE · MW420954.1 · 65,486–65,737 bp · −
trnW-CCA · MW420954.1 · 67,148–67,221 bp · −
trnP-UGG · MW420954.1 · 67,391–67,464 bp · −
rpl20 · MW420954.1 · 69,260–69,646 bp · −
rps12 · MW420954.1 · 70,436–70,561 bp · −
rps12 · MW420954.1 · 97,782–98,572 bp · −
clpP · MW420954.1 · 70,704–72,638 bp · −
psbN · MW420954.1 · 75,006–75,137 bp · −
rpoA · MW420954.1 · 78,505–79,518 bp · −
rps11 · MW420954.1 · 79,590–80,006 bp · −
rpl36 · MW420954.1 · 80,108–80,221 bp · −
infA · MW420954.1 · 80,317–80,550 bp · −
rps8 · MW420954.1 · 80,670–81,080 bp · −
rpl14 · MW420954.1 · 81,239–81,607 bp · −
rpl16 · MW420954.1 · 81,734–82,977 bp · −
rps3 · MW420954.1 · 83,132–83,794 bp · −
rpl22 · MW420954.1 · 83,796–84,251 bp · −
rps19 · MW420954.1 · 84,311–84,589 bp · −
rpl2 · MW420954.1 · 84,644–86,126 bp · −
rpl23 · MW420954.1 · 86,145–86,426 bp · −
trnI-CAU · MW420954.1 · 86,586–86,659 bp · −
trnL-CAA · MW420954.1 · 94,152–94,232 bp · −
ndhB · MW420954.1 · 94,775–96,986 bp · −
rps7 · MW420954.1 · 97,261–97,728 bp · −
ndhF · MW420954.1 · 109,767–112,007 bp · −
ndhD · MW420954.1 · 114,530–116,050 bp · −
psaC · MW420954.1 · 116,152–116,397 bp · −
ndhE · MW420954.1 · 116,659–116,964 bp · −
ndhG · MW420954.1 · 117,185–117,715 bp · −
ndhI · MW420954.1 · 118,079–118,579 bp · −
ndhA · MW420954.1 · 118,660–120,751 bp · −
ndhH · MW420954.1 · 120,753–121,934 bp · −
rps15 · MW420954.1 · 122,037–122,309 bp · −
ycf1 · MW420954.1 · 122,580–128,123 bp · −
trnR-ACG · MW420954.1 · 129,064–129,137 bp · −
rrn5 · MW420954.1 · 129,372–129,492 bp · −
rrn4.5 · MW420954.1 · 129,740–129,842 bp · −
rrn23 · MW420954.1 · 129,941–132,753 bp · −
trnA-UGC · MW420954.1 · 132,923–133,808 bp · −
trnI-GAU · MW420954.1 · 133,874–134,893 bp · −
rrn16 · MW420954.1 · 135,192–136,684 bp · −
trnV-GAC · MW420954.1 · 136,912–136,983 bp · −
ycf15 · MW420954.1 · 143,247–143,444 bp · −
ycf2 · MW420954.1 · 143,586–150,395 bp · −
psbK · MW420954.1 · 7,858–8,043 bp · +
psbI · MW420954.1 · 8,435–8,545 bp · +
trnG-CGA · MW420954.1 · 9,437–10,196 bp · +
trnR-UCU · MW420954.1 · 10,371–10,442 bp · +
trnC-GCA · MW420954.1 · 28,592–28,662 bp · +
petN · MW420954.1 · 29,373–29,462 bp · +
trnT-GGU · MW420954.1 · 32,104–32,175 bp · +
psbD · MW420954.1 · 33,477–34,538 bp · +
psbC · MW420954.1 · 34,486–35,907 bp · +
psbZ · MW420954.1 · 36,562–36,750 bp · +
trnG-GCC · MW420954.1 · 37,022–37,092 bp · +
trnS-GGA · MW420954.1 · 45,857–45,943 bp · +
trnL-UAA · MW420954.1 · 47,931–48,500 bp · +
trnF-GAA · MW420954.1 · 48,806–48,878 bp · +
trnM-CAU · MW420954.1 · 53,033–53,105 bp · +
rbcL · MW420954.1 · 55,973–57,415 bp · +
accD · MW420954.1 · 58,126–59,592 bp · +
psaI · MW420954.1 · 60,323–60,433 bp · +
ycf4 · MW420954.1 · 60,867–61,421 bp · +
cemA · MW420954.1 · 62,110–62,769 bp · +
petA · MW420954.1 · 62,976–63,938 bp · +
petL · MW420954.1 · 66,646–66,741 bp · +
petG · MW420954.1 · 66,916–67,029 bp · +
psbJ · MW420954.1 · 67,736–67,870 bp · +
rpl33 · MW420954.1 · 68,342–68,542 bp · +
rps18 · MW420954.1 · 68,717–69,022 bp · +
rps12 · MW420954.1 · 138,571–139,361 bp · +
psbB · MW420954.1 · 73,113–74,639 bp · +
psbT · MW420954.1 · 74,831–74,932 bp · +
psbH · MW420954.1 · 75,241–75,462 bp · +
petB · MW420954.1 · 75,587–76,952 bp · +
petD · MW420954.1 · 77,141–78,342 bp · +
ycf2 · MW420954.1 · 86,748–93,557 bp · +
ycf15 · MW420954.1 · 93,699–93,896 bp · +
trnV-GAC · MW420954.1 · 100,160–100,231 bp · +
rrn16 · MW420954.1 · 100,459–101,951 bp · +
trnI-GAU · MW420954.1 · 102,250–103,269 bp · +
trnA-UGC · MW420954.1 · 103,335–104,220 bp · +
rrn23 · MW420954.1 · 104,390–107,202 bp · +
rrn4.5 · MW420954.1 · 107,301–107,403 bp · +
rrn5 · MW420954.1 · 107,651–107,771 bp · +
trnR-ACG · MW420954.1 · 108,006–108,079 bp · +
trnN-GUU · MW420954.1 · 108,626–108,697 bp · +
rpl32 · MW420954.1 · 112,524–112,700 bp · +
trnL-UAG · MW420954.1 · 113,147–113,226 bp · +
ccsA · MW420954.1 · 113,323–114,297 bp · +
trnN-GUU · MW420954.1 · 128,446–128,517 bp · +
rps7 · MW420954.1 · 139,415–139,882 bp · +
ndhB · MW420954.1 · 140,157–142,368 bp · +
trnL-CAA · MW420954.1 · 142,911–142,991 bp · +
trnI-CAU · MW420954.1 · 150,484–150,557 bp · +
rpl23 · MW420954.1 · 150,717–150,998 bp · +
rpl2 · MW420954.1 · 151,017–152,499 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria moniliorhiza
ANNOTATED PLASTOME
MW420954.1
152,594 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38148 76297 114446 152594 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1676 4255 2580 Locate
matK gene − 1967 3502 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUC gene − 7462 7533 72 Locate
psbK gene + 7858 8043 186 Locate
psbI gene + 8435 8545 111 Locate
trnS-GCU gene − 8662 8749 88 Locate
trnG-CGA gene + 9437 10196 760 Locate
trnR-UCU gene + 10371 10442 72 Locate
atpA gene − 10539 12062 1524 Locate
atpF gene − 12136 13363 1228 Locate
atpH gene − 13732 13977 246 Locate
atpI gene − 14974 15717 744 Locate
rps2 gene − 16066 16776 711 Locate
rpoC2 gene − 16993 21198 4206 Locate
rpoC1 gene − 21353 24189 2837 Locate
rpoB gene − 24216 27428 3213 Locate
trnC-GCA gene + 28592 28662 71 Locate
petN gene + 29373 29462 90 Locate
psbM gene − 30489 30593 105 Locate
trnD-GUC gene − 31119 31192 74 Locate
trnY-GUA gene − 31306 31389 84 Locate
trnE-UUC gene − 31449 31521 73 Locate
trnT-GGU gene + 32104 32175 72 Locate
psbD gene + 33477 34538 1062 Locate
psbC gene + 34486 35907 1422 Locate
trnS-UCA gene − 36150 36242 93 Locate
psbZ gene + 36562 36750 189 Locate
trnG-GCC gene + 37022 37092 71 Locate
trnfM-CAU gene − 37238 37311 74 Locate
rps14 gene − 37461 37763 303 Locate
psaB gene − 37891 40095 2205 Locate
psaA gene − 40121 42373 2253 Locate
ycf3 gene − 43048 44971 1924 Locate
trnS-GGA gene + 45857 45943 87 Locate
rps4 gene − 46229 46834 606 Locate
trnT-UGU gene − 47173 47245 73 Locate
trnL-UAA gene + 47931 48500 570 Locate
trnF-GAA gene + 48806 48878 73 Locate
ndhJ gene − 49527 50003 477 Locate
ndhK gene − 50111 50788 678 Locate
ndhC gene − 50841 51203 363 Locate
trnV-UAC gene − 52200 52852 653 Locate
trnM-CAU gene + 53033 53105 73 Locate
atpE gene − 53315 53716 402 Locate
atpB gene − 53713 55200 1488 Locate
rbcL gene + 55973 57415 1443 Locate
accD gene + 58126 59592 1467 Locate
psaI gene + 60323 60433 111 Locate
ycf4 gene + 60867 61421 555 Locate
cemA gene + 62110 62769 660 Locate
petA gene + 62976 63938 963 Locate
pabJ gene − 64956 65078 123 Locate
psbL gene − 65212 65328 117 Locate
psbF gene − 65352 65471 120 Locate
psbE gene − 65486 65737 252 Locate
petL gene + 66646 66741 96 Locate
petG gene + 66916 67029 114 Locate
trnW-CCA gene − 67148 67221 74 Locate
trnP-UGG gene − 67391 67464 74 Locate
psbJ gene + 67736 67870 135 Locate
rpl33 gene + 68342 68542 201 Locate
rps18 gene + 68717 69022 306 Locate
rpl20 gene − 69260 69646 387 Locate
rps12 gene − 70436 70561 126 Locate
clpP gene − 70704 72638 1935 Locate
psbB gene + 73113 74639 1527 Locate
psbT gene + 74831 74932 102 Locate
psbN gene − 75006 75137 132 Locate
psbH gene + 75241 75462 222 Locate
petB gene + 75587 76952 1366 Locate
petD gene + 77141 78342 1202 Locate
rpoA gene − 78505 79518 1014 Locate
rps11 gene − 79590 80006 417 Locate
rpl36 gene − 80108 80221 114 Locate
infA gene − 80317 80550 234 Locate
rps8 gene − 80670 81080 411 Locate
rpl14 gene − 81239 81607 369 Locate
rpl16 gene − 81734 82977 1244 Locate
rps3 gene − 83132 83794 663 Locate
rpl22 gene − 83796 84251 456 Locate
rps19 gene − 84311 84589 279 Locate
rpl2 gene − 84644 86126 1483 Locate
rpl23 gene − 86145 86426 282 Locate
trnI-CAU gene − 86586 86659 74 Locate
ycf2 gene + 86748 93557 6810 Locate
ycf15 gene + 93699 93896 198 Locate
trnL-CAA gene − 94152 94232 81 Locate
ndhB gene − 94775 96986 2212 Locate
rps7 gene − 97261 97728 468 Locate
rps12 gene − 97782 98572 791 Locate
trnV-GAC gene + 100160 100231 72 Locate
rrn16 gene + 100459 101951 1493 Locate
trnI-GAU gene + 102250 103269 1020 Locate
trnA-UGC gene + 103335 104220 886 Locate
rrn23 gene + 104390 107202 2813 Locate
rrn4.5 gene + 107301 107403 103 Locate
rrn5 gene + 107651 107771 121 Locate
trnR-ACG gene + 108006 108079 74 Locate
trnN-GUU gene + 108626 108697 72 Locate
ndhF gene − 109767 112007 2241 Locate
rpl32 gene + 112524 112700 177 Locate
trnL-UAG gene + 113147 113226 80 Locate
ccsA gene + 113323 114297 975 Locate
ndhD gene − 114530 116050 1521 Locate
psaC gene − 116152 116397 246 Locate
ndhE gene − 116659 116964 306 Locate
ndhG gene − 117185 117715 531 Locate
ndhI gene − 118079 118579 501 Locate
ndhA gene − 118660 120751 2092 Locate
ndhH gene − 120753 121934 1182 Locate
rps15 gene − 122037 122309 273 Locate
ycf1 gene − 122580 128123 5544 Locate
trnN-GUU gene + 128446 128517 72 Locate
trnR-ACG gene − 129064 129137 74 Locate
rrn5 gene − 129372 129492 121 Locate
rrn4.5 gene − 129740 129842 103 Locate
rrn23 gene − 129941 132753 2813 Locate
trnA-UGC gene − 132923 133808 886 Locate
trnI-GAU gene − 133874 134893 1020 Locate
rrn16 gene − 135192 136684 1493 Locate
trnV-GAC gene − 136912 136983 72 Locate
rps12 gene + 138571 139361 791 Locate
rps7 gene + 139415 139882 468 Locate
ndhB gene + 140157 142368 2212 Locate
trnL-CAA gene + 142911 142991 81 Locate
ycf15 gene − 143247 143444 198 Locate
ycf2 gene − 143586 150395 6810 Locate
trnI-CAU gene + 150484 150557 74 Locate
rpl23 gene + 150717 150998 282 Locate
rpl2 gene + 151017 152499 1483 Locate
Status Available
Accession MW420954.1
Length 152,594 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources