Scutellaria multicaulis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420936.1 · 10–83 bp · −
psbA · MW420936.1 · 381–1,439 bp · −
trnK-UUU · MW420936.1 · 1,686–4,254 bp · −
matK · MW420936.1 · 1,964–3,490 bp · −
rps16 · MW420936.1 · 5,157–6,317 bp · −
trnQ-UUG · MW420936.1 · 7,447–7,518 bp · −
trnS-GCU · MW420936.1 · 8,645–8,732 bp · −
atpA · MW420936.1 · 10,528–12,051 bp · −
atpF · MW420936.1 · 12,134–13,363 bp · −
atpH · MW420936.1 · 13,725–13,970 bp · −
atpI · MW420936.1 · 14,958–15,701 bp · −
rps2 · MW420936.1 · 16,047–16,757 bp · −
rpoC2 · MW420936.1 · 16,972–21,177 bp · −
rpoC1 · MW420936.1 · 21,332–24,164 bp · −
rpoB · MW420936.1 · 24,191–27,403 bp · −
psbM · MW420936.1 · 30,512–30,616 bp · −
trnD-GUC · MW420936.1 · 31,142–31,215 bp · −
trnY-GUA · MW420936.1 · 31,329–31,412 bp · −
trnE-UUC · MW420936.1 · 31,472–31,544 bp · −
trnS-UCA · MW420936.1 · 36,161–36,253 bp · −
trnfM-CAU · MW420936.1 · 37,248–37,321 bp · −
rps14 · MW420936.1 · 37,476–37,778 bp · −
psaB · MW420936.1 · 37,906–40,110 bp · −
psaA · MW420936.1 · 40,136–42,388 bp · −
ycf3 · MW420936.1 · 43,086–45,006 bp · −
rps4 · MW420936.1 · 46,257–46,862 bp · −
trnT-UGU · MW420936.1 · 47,203–47,275 bp · −
ndhJ · MW420936.1 · 49,547–50,023 bp · −
ndhK · MW420936.1 · 50,132–50,809 bp · −
ndhC · MW420936.1 · 50,863–51,225 bp · −
trnV-UAC · MW420936.1 · 52,202–52,854 bp · −
atpE · MW420936.1 · 53,309–53,710 bp · −
atpB · MW420936.1 · 53,707–55,203 bp · −
pabJ · MW420936.1 · 64,919–65,041 bp · −
psbL · MW420936.1 · 65,175–65,291 bp · −
psbF · MW420936.1 · 65,315–65,434 bp · −
psbE · MW420936.1 · 65,449–65,700 bp · −
trnW-CCA · MW420936.1 · 67,084–67,157 bp · −
trnP-UGG · MW420936.1 · 67,327–67,400 bp · −
rpl20 · MW420936.1 · 69,196–69,582 bp · −
rps12 · MW420936.1 · 70,365–70,490 bp · −
rps12 · MW420936.1 · 97,648–98,438 bp · −
clpP · MW420936.1 · 70,632–72,562 bp · −
psbN · MW420936.1 · 74,900–75,031 bp · −
rpoA · MW420936.1 · 78,542–79,396 bp · −
rps11 · MW420936.1 · 79,468–79,884 bp · −
rpl36 · MW420936.1 · 79,986–80,099 bp · −
infA · MW420936.1 · 80,194–80,427 bp · −
rps8 · MW420936.1 · 80,550–80,960 bp · −
rpl14 · MW420936.1 · 81,112–81,480 bp · −
rpl16 · MW420936.1 · 81,607–82,840 bp · −
rps3 · MW420936.1 · 82,996–83,658 bp · −
rpl22 · MW420936.1 · 83,660–84,115 bp · −
rps19 · MW420936.1 · 84,175–84,453 bp · −
rpl2 · MW420936.1 · 84,507–85,988 bp · −
rpl23 · MW420936.1 · 86,007–86,288 bp · −
trnI-CAU · MW420936.1 · 86,448–86,521 bp · −
trnL-CAA · MW420936.1 · 94,018–94,098 bp · −
ndhB · MW420936.1 · 94,641–96,852 bp · −
rps7 · MW420936.1 · 97,127–97,594 bp · −
ndhF · MW420936.1 · 109,605–111,866 bp · −
ndhD · MW420936.1 · 114,231–115,760 bp · −
psaC · MW420936.1 · 115,860–116,105 bp · −
ndhE · MW420936.1 · 116,357–116,662 bp · −
ndhG · MW420936.1 · 116,879–117,409 bp · −
ndhI · MW420936.1 · 117,777–118,277 bp · −
ndhA · MW420936.1 · 118,358–120,485 bp · −
ndhH · MW420936.1 · 120,487–121,668 bp · −
rps15 · MW420936.1 · 121,765–122,037 bp · −
ycf1 · MW420936.1 · 122,236–127,764 bp · −
trnR-ACG · MW420936.1 · 128,714–128,787 bp · −
rrn5 · MW420936.1 · 129,022–129,142 bp · −
rrn4.5 · MW420936.1 · 129,390–129,492 bp · −
rrn23 · MW420936.1 · 129,591–132,402 bp · −
trnA-UGC · MW420936.1 · 132,572–133,460 bp · −
trnI-GAU · MW420936.1 · 133,526–134,545 bp · −
rrn16 · MW420936.1 · 134,844–136,334 bp · −
trnV-GAC · MW420936.1 · 136,561–136,632 bp · −
ycf15 · MW420936.1 · 142,884–143,147 bp · −
ycf2 · MW420936.1 · 143,223–150,032 bp · −
psbK · MW420936.1 · 7,843–8,028 bp · +
psbI · MW420936.1 · 8,417–8,527 bp · +
trnG-UCC · MW420936.1 · 9,428–10,185 bp · +
trnR-UCU · MW420936.1 · 10,360–10,431 bp · +
trnC-GCA · MW420936.1 · 28,565–28,635 bp · +
petN · MW420936.1 · 29,349–29,438 bp · +
trnT-GGU · MW420936.1 · 32,120–32,191 bp · +
psbD · MW420936.1 · 33,496–34,557 bp · +
psbC · MW420936.1 · 34,505–35,926 bp · +
psbZ · MW420936.1 · 36,569–36,757 bp · +
trnG-GCC · MW420936.1 · 37,032–37,102 bp · +
trnS-GGA · MW420936.1 · 45,895–45,981 bp · +
trnL-UAA · MW420936.1 · 47,960–48,520 bp · +
trnF-GAA · MW420936.1 · 48,827–48,899 bp · +
trnM-CAU · MW420936.1 · 53,043–53,115 bp · +
rbcL · MW420936.1 · 55,969–57,411 bp · +
accD · MW420936.1 · 58,113–59,591 bp · +
psaI · MW420936.1 · 60,297–60,407 bp · +
ycf4 · MW420936.1 · 60,841–61,395 bp · +
cemA · MW420936.1 · 62,084–62,743 bp · +
petA · MW420936.1 · 62,950–63,912 bp · +
petL · MW420936.1 · 66,581–66,676 bp · +
petG · MW420936.1 · 66,852–66,965 bp · +
psbJ · MW420936.1 · 67,672–67,806 bp · +
rpl33 · MW420936.1 · 68,283–68,483 bp · +
rps18 · MW420936.1 · 68,657–68,962 bp · +
rps12 · MW420936.1 · 138,204–138,994 bp · +
psbB · MW420936.1 · 73,014–74,540 bp · +
psbT · MW420936.1 · 74,732–74,839 bp · +
psbH · MW420936.1 · 75,135–75,356 bp · +
petB · MW420936.1 · 75,481–76,852 bp · +
petD · MW420936.1 · 77,035–78,240 bp · +
ycf2 · MW420936.1 · 86,610–93,419 bp · +
ycf15 · MW420936.1 · 93,495–93,758 bp · +
trnV-GAC · MW420936.1 · 100,010–100,081 bp · +
rrn16 · MW420936.1 · 100,308–101,798 bp · +
trnI-GAU · MW420936.1 · 102,097–103,116 bp · +
trnA-UGC · MW420936.1 · 103,182–104,070 bp · +
rrn23 · MW420936.1 · 104,240–107,051 bp · +
rrn4.5 · MW420936.1 · 107,150–107,252 bp · +
rrn5 · MW420936.1 · 107,500–107,620 bp · +
trnR-ACG · MW420936.1 · 107,855–107,928 bp · +
trnN-GUU · MW420936.1 · 108,477–108,548 bp · +
rpl32 · MW420936.1 · 112,195–112,371 bp · +
trnL-UAG · MW420936.1 · 112,818–112,897 bp · +
ccsA · MW420936.1 · 113,000–113,974 bp · +
trnN-GUU · MW420936.1 · 128,094–128,165 bp · +
rps7 · MW420936.1 · 139,048–139,515 bp · +
ndhB · MW420936.1 · 139,790–142,001 bp · +
trnL-CAA · MW420936.1 · 142,544–142,624 bp · +
trnI-CAU · MW420936.1 · 150,121–150,194 bp · +
rpl23 · MW420936.1 · 150,354–150,635 bp · +
rpl2 · MW420936.1 · 150,654–152,135 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria multicaulis
ANNOTATED PLASTOME
MW420936.1
152,234 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38058 76117 114176 152234 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 10 83 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1686 4254 2569 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6317 1161 Locate
trnQ-UUG gene − 7447 7518 72 Locate
psbK gene + 7843 8028 186 Locate
psbI gene + 8417 8527 111 Locate
trnS-GCU gene − 8645 8732 88 Locate
trnG-UCC gene + 9428 10185 758 Locate
trnR-UCU gene + 10360 10431 72 Locate
atpA gene − 10528 12051 1524 Locate
atpF gene − 12134 13363 1230 Locate
atpH gene − 13725 13970 246 Locate
atpI gene − 14958 15701 744 Locate
rps2 gene − 16047 16757 711 Locate
rpoC2 gene − 16972 21177 4206 Locate
rpoC1 gene − 21332 24164 2833 Locate
rpoB gene − 24191 27403 3213 Locate
trnC-GCA gene + 28565 28635 71 Locate
petN gene + 29349 29438 90 Locate
psbM gene − 30512 30616 105 Locate
trnD-GUC gene − 31142 31215 74 Locate
trnY-GUA gene − 31329 31412 84 Locate
trnE-UUC gene − 31472 31544 73 Locate
trnT-GGU gene + 32120 32191 72 Locate
psbD gene + 33496 34557 1062 Locate
psbC gene + 34505 35926 1422 Locate
trnS-UCA gene − 36161 36253 93 Locate
psbZ gene + 36569 36757 189 Locate
trnG-GCC gene + 37032 37102 71 Locate
trnfM-CAU gene − 37248 37321 74 Locate
rps14 gene − 37476 37778 303 Locate
psaB gene − 37906 40110 2205 Locate
psaA gene − 40136 42388 2253 Locate
ycf3 gene − 43086 45006 1921 Locate
trnS-GGA gene + 45895 45981 87 Locate
rps4 gene − 46257 46862 606 Locate
trnT-UGU gene − 47203 47275 73 Locate
trnL-UAA gene + 47960 48520 561 Locate
trnF-GAA gene + 48827 48899 73 Locate
ndhJ gene − 49547 50023 477 Locate
ndhK gene − 50132 50809 678 Locate
ndhC gene − 50863 51225 363 Locate
trnV-UAC gene − 52202 52854 653 Locate
trnM-CAU gene + 53043 53115 73 Locate
atpE gene − 53309 53710 402 Locate
atpB gene − 53707 55203 1497 Locate
rbcL gene + 55969 57411 1443 Locate
accD gene + 58113 59591 1479 Locate
psaI gene + 60297 60407 111 Locate
ycf4 gene + 60841 61395 555 Locate
cemA gene + 62084 62743 660 Locate
petA gene + 62950 63912 963 Locate
pabJ gene − 64919 65041 123 Locate
psbL gene − 65175 65291 117 Locate
psbF gene − 65315 65434 120 Locate
psbE gene − 65449 65700 252 Locate
petL gene + 66581 66676 96 Locate
petG gene + 66852 66965 114 Locate
trnW-CCA gene − 67084 67157 74 Locate
trnP-UGG gene − 67327 67400 74 Locate
psbJ gene + 67672 67806 135 Locate
rpl33 gene + 68283 68483 201 Locate
rps18 gene + 68657 68962 306 Locate
rpl20 gene − 69196 69582 387 Locate
rps12 gene − 70365 70490 126 Locate
clpP gene − 70632 72562 1931 Locate
psbB gene + 73014 74540 1527 Locate
psbT gene + 74732 74839 108 Locate
psbN gene − 74900 75031 132 Locate
psbH gene + 75135 75356 222 Locate
petB gene + 75481 76852 1372 Locate
petD gene + 77035 78240 1206 Locate
rpoA gene − 78542 79396 855 Locate
rps11 gene − 79468 79884 417 Locate
rpl36 gene − 79986 80099 114 Locate
infA gene − 80194 80427 234 Locate
rps8 gene − 80550 80960 411 Locate
rpl14 gene − 81112 81480 369 Locate
rpl16 gene − 81607 82840 1234 Locate
rps3 gene − 82996 83658 663 Locate
rpl22 gene − 83660 84115 456 Locate
rps19 gene − 84175 84453 279 Locate
rpl2 gene − 84507 85988 1482 Locate
rpl23 gene − 86007 86288 282 Locate
trnI-CAU gene − 86448 86521 74 Locate
ycf2 gene + 86610 93419 6810 Locate
ycf15 gene + 93495 93758 264 Locate
trnL-CAA gene − 94018 94098 81 Locate
ndhB gene − 94641 96852 2212 Locate
rps7 gene − 97127 97594 468 Locate
rps12 gene − 97648 98438 791 Locate
trnV-GAC gene + 100010 100081 72 Locate
rrn16 gene + 100308 101798 1491 Locate
trnI-GAU gene + 102097 103116 1020 Locate
trnA-UGC gene + 103182 104070 889 Locate
rrn23 gene + 104240 107051 2812 Locate
rrn4.5 gene + 107150 107252 103 Locate
rrn5 gene + 107500 107620 121 Locate
trnR-ACG gene + 107855 107928 74 Locate
trnN-GUU gene + 108477 108548 72 Locate
ndhF gene − 109605 111866 2262 Locate
rpl32 gene + 112195 112371 177 Locate
trnL-UAG gene + 112818 112897 80 Locate
ccsA gene + 113000 113974 975 Locate
ndhD gene − 114231 115760 1530 Locate
psaC gene − 115860 116105 246 Locate
ndhE gene − 116357 116662 306 Locate
ndhG gene − 116879 117409 531 Locate
ndhI gene − 117777 118277 501 Locate
ndhA gene − 118358 120485 2128 Locate
ndhH gene − 120487 121668 1182 Locate
rps15 gene − 121765 122037 273 Locate
ycf1 gene − 122236 127764 5529 Locate
trnN-GUU gene + 128094 128165 72 Locate
trnR-ACG gene − 128714 128787 74 Locate
rrn5 gene − 129022 129142 121 Locate
rrn4.5 gene − 129390 129492 103 Locate
rrn23 gene − 129591 132402 2812 Locate
trnA-UGC gene − 132572 133460 889 Locate
trnI-GAU gene − 133526 134545 1020 Locate
rrn16 gene − 134844 136334 1491 Locate
trnV-GAC gene − 136561 136632 72 Locate
rps12 gene + 138204 138994 791 Locate
rps7 gene + 139048 139515 468 Locate
ndhB gene + 139790 142001 2212 Locate
trnL-CAA gene + 142544 142624 81 Locate
ycf15 gene − 142884 143147 264 Locate
ycf2 gene − 143223 150032 6810 Locate
trnI-CAU gene + 150121 150194 74 Locate
rpl23 gene + 150354 150635 282 Locate
rpl2 gene + 150654 152135 1482 Locate
Status Available
Accession MW420936.1
Length 152,234 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources