Scutellaria muramatsui chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059322.1 · 3–76 bp · −
psbA · PQ059322.1 · 369–1,427 bp · −
trnK-UUU · PQ059322.1 · 1,661–4,249 bp · −
matK · PQ059322.1 · 1,956–3,491 bp · −
rps16 · PQ059322.1 · 5,121–6,284 bp · −
trnQ-UUG · PQ059322.1 · 7,304–7,375 bp · −
trnS-GCU · PQ059322.1 · 8,507–8,594 bp · −
atpA · PQ059322.1 · 10,375–11,898 bp · −
atpF · PQ059322.1 · 11,981–13,208 bp · −
atpH · PQ059322.1 · 13,564–13,809 bp · −
atpI · PQ059322.1 · 14,797–15,540 bp · −
rps2 · PQ059322.1 · 15,889–16,599 bp · −
rpoC2 · PQ059322.1 · 16,816–21,021 bp · −
rpoC1 · PQ059322.1 · 21,176–23,997 bp · −
rpoB · PQ059322.1 · 24,024–27,236 bp · −
psbM · PQ059322.1 · 30,329–30,433 bp · −
trnD-GUC · PQ059322.1 · 30,960–31,033 bp · −
trnY-GUA · PQ059322.1 · 31,147–31,230 bp · −
trnE-UUC · PQ059322.1 · 31,290–31,362 bp · −
trnS-UGA · PQ059322.1 · 35,989–36,080 bp · −
trnfM-CAU · PQ059322.1 · 37,083–37,156 bp · −
rps14 · PQ059322.1 · 37,306–37,608 bp · −
psaB · PQ059322.1 · 37,736–39,940 bp · −
psaA · PQ059322.1 · 39,966–42,218 bp · −
ycf3 · PQ059322.1 · 42,888–44,810 bp · −
rps4 · PQ059322.1 · 46,056–46,661 bp · −
trnT-UGU · PQ059322.1 · 47,003–47,075 bp · −
ndhJ · PQ059322.1 · 49,349–49,825 bp · −
ndhK · PQ059322.1 · 49,933–50,610 bp · −
ndhC · PQ059322.1 · 50,663–51,025 bp · −
trnV-UAC · PQ059322.1 · 51,881–52,533 bp · −
atpE · PQ059322.1 · 53,002–53,403 bp · −
atpB · PQ059322.1 · 53,400–54,887 bp · −
psbJ · PQ059322.1 · 64,510–64,632 bp · −
psbL · PQ059322.1 · 64,766–64,987 bp · −
psbF · PQ059322.1 · 64,906–65,025 bp · −
psbE · PQ059322.1 · 65,040–65,291 bp · −
trnW-CCA · PQ059322.1 · 66,703–66,776 bp · −
trnP-UGG · PQ059322.1 · 66,946–67,019 bp · −
rpl20 · PQ059322.1 · 68,817–69,203 bp · −
rps12 · PQ059322.1 · 70,003–70,116 bp · −
rps12 · PQ059322.1 · 97,324–98,114 bp · −
clpP · PQ059322.1 · 70,259–72,191 bp · −
psbN · PQ059322.1 · 74,552–74,683 bp · −
rpoA · PQ059322.1 · 78,053–79,066 bp · −
rps11 · PQ059322.1 · 79,138–79,554 bp · −
rpl36 · PQ059322.1 · 79,656–79,769 bp · −
infA · PQ059322.1 · 79,865–80,098 bp · −
rps8 · PQ059322.1 · 80,218–80,628 bp · −
rpl14 · PQ059322.1 · 80,798–81,166 bp · −
rpl16 · PQ059322.1 · 81,293–82,519 bp · −
rps3 · PQ059322.1 · 82,674–83,336 bp · −
rpl22 · PQ059322.1 · 83,338–83,793 bp · −
rps19 · PQ059322.1 · 83,853–84,131 bp · −
rpl2 · PQ059322.1 · 84,186–85,668 bp · −
rpl23 · PQ059322.1 · 85,687–85,968 bp · −
trnI-CAU · PQ059322.1 · 86,128–86,201 bp · −
trnL-CAA · PQ059322.1 · 93,694–93,774 bp · −
ndhB · PQ059322.1 · 94,317–96,528 bp · −
rps7 · PQ059322.1 · 96,803–97,270 bp · −
trnN-GUU · PQ059322.1 · 108,153–108,224 bp · −
ndhF · PQ059322.1 · 109,301–111,541 bp · −
ndhD · PQ059322.1 · 114,058–115,581 bp · −
psaC · PQ059322.1 · 115,680–115,925 bp · −
ndhE · PQ059322.1 · 116,182–116,487 bp · −
ndhG · PQ059322.1 · 116,718–117,248 bp · −
ndhI · PQ059322.1 · 117,614–118,114 bp · −
ndhA · PQ059322.1 · 118,195–120,292 bp · −
ndhH · PQ059322.1 · 120,294–121,505 bp · −
rps15 · PQ059322.1 · 121,578–121,850 bp · −
ycf1 · PQ059322.1 · 122,062–127,707 bp · −
trnR-ACG · PQ059322.1 · 128,544–128,617 bp · −
rrn5 · PQ059322.1 · 128,852–128,972 bp · −
rrn4.5 · PQ059322.1 · 129,220–129,322 bp · −
rrn23 · PQ059322.1 · 129,421–132,233 bp · −
trnA-UGC · PQ059322.1 · 132,403–133,285 bp · −
trnI-GAU · PQ059322.1 · 133,350–134,370 bp · −
ycf68 · PQ059322.1 · 133,976–134,215 bp · −
rrn16 · PQ059322.1 · 134,669–136,159 bp · −
trnV-GAC · PQ059322.1 · 136,387–136,458 bp · −
ycf15 · PQ059322.1 · 142,712–142,960 bp · −
ycf2 · PQ059322.1 · 143,051–149,860 bp · −
psbK · PQ059322.1 · 7,700–7,885 bp · +
psbI · PQ059322.1 · 8,277–8,387 bp · +
trnG-UCC · PQ059322.1 · 9,276–10,036 bp · +
trnR-UCU · PQ059322.1 · 10,207–10,278 bp · +
trnC-GCA · PQ059322.1 · 28,406–28,476 bp · +
petN · PQ059322.1 · 29,195–29,284 bp · +
trnT-GGU · PQ059322.1 · 31,938–32,009 bp · +
psbD · PQ059322.1 · 33,323–34,384 bp · +
psbC · PQ059322.1 · 34,332–35,753 bp · +
psbZ · PQ059322.1 · 36,400–36,588 bp · +
trnG-GCC · PQ059322.1 · 36,860–36,930 bp · +
trnS-GGA · PQ059322.1 · 45,684–45,770 bp · +
trnL-UAA · PQ059322.1 · 47,760–48,321 bp · +
trnF-GAA · PQ059322.1 · 48,628–48,700 bp · +
trnM-CAU · PQ059322.1 · 52,714–52,786 bp · +
rbcL · PQ059322.1 · 55,638–57,098 bp · +
accD · PQ059322.1 · 57,828–59,294 bp · +
psaI · PQ059322.1 · 59,868–59,978 bp · +
ycf4 · PQ059322.1 · 60,412–60,966 bp · +
cemA · PQ059322.1 · 61,704–62,303 bp · +
petA · PQ059322.1 · 62,510–63,472 bp · +
petL · PQ059322.1 · 66,200–66,295 bp · +
petG · PQ059322.1 · 66,471–66,584 bp · +
psaJ · PQ059322.1 · 67,292–67,426 bp · +
rpl33 · PQ059322.1 · 67,900–68,100 bp · +
rps18 · PQ059322.1 · 68,275–68,580 bp · +
rps12 · PQ059322.1 · 138,036–138,826 bp · +
psbB · PQ059322.1 · 72,658–74,184 bp · +
psbT · PQ059322.1 · 74,376–74,477 bp · +
psbH · PQ059322.1 · 74,787–75,008 bp · +
petB · PQ059322.1 · 75,133–76,500 bp · +
petD · PQ059322.1 · 76,689–77,890 bp · +
ycf2 · PQ059322.1 · 86,290–93,099 bp · +
ycf15 · PQ059322.1 · 93,190–93,438 bp · +
trnV-GAC · PQ059322.1 · 99,692–99,763 bp · +
rrn16 · PQ059322.1 · 99,991–101,481 bp · +
trnI-GAU · PQ059322.1 · 101,780–102,800 bp · +
trnA-UGC · PQ059322.1 · 102,865–103,747 bp · +
rrn23 · PQ059322.1 · 103,917–106,729 bp · +
rrn4.5 · PQ059322.1 · 106,828–106,930 bp · +
rrn5 · PQ059322.1 · 107,178–107,298 bp · +
trnR-ACG · PQ059322.1 · 107,533–107,606 bp · +
rpl32 · PQ059322.1 · 112,062–112,238 bp · +
trnL-UAG · PQ059322.1 · 112,675–112,754 bp · +
ccsA · PQ059322.1 · 112,851–113,825 bp · +
trnN-GUU · PQ059322.1 · 127,926–127,997 bp · +
rps7 · PQ059322.1 · 138,880–139,347 bp · +
ndhB · PQ059322.1 · 139,622–141,833 bp · +
trnL-CAA · PQ059322.1 · 142,376–142,456 bp · +
trnI-CAU · PQ059322.1 · 149,949–150,022 bp · +
rpl23 · PQ059322.1 · 150,182–150,463 bp · +
rpl2 · PQ059322.1 · 150,482–151,964 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria muramatsui
ANNOTATED PLASTOME
PQ059322.1
152,059 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38015 76030 114044 152059 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1661 4249 2589 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5121 6284 1164 Locate
trnQ-UUG gene − 7304 7375 72 Locate
psbK gene + 7700 7885 186 Locate
psbI gene + 8277 8387 111 Locate
trnS-GCU gene − 8507 8594 88 Locate
trnG-UCC gene + 9276 10036 761 Locate
trnR-UCU gene + 10207 10278 72 Locate
atpA gene − 10375 11898 1524 Locate
atpF gene − 11981 13208 1228 Locate
atpH gene − 13564 13809 246 Locate
atpI gene − 14797 15540 744 Locate
rps2 gene − 15889 16599 711 Locate
rpoC2 gene − 16816 21021 4206 Locate
rpoC1 gene − 21176 23997 2822 Locate
rpoB gene − 24024 27236 3213 Locate
trnC-GCA gene + 28406 28476 71 Locate
petN gene + 29195 29284 90 Locate
psbM gene − 30329 30433 105 Locate
trnD-GUC gene − 30960 31033 74 Locate
trnY-GUA gene − 31147 31230 84 Locate
trnE-UUC gene − 31290 31362 73 Locate
trnT-GGU gene + 31938 32009 72 Locate
psbD gene + 33323 34384 1062 Locate
psbC gene + 34332 35753 1422 Locate
trnS-UGA gene − 35989 36080 92 Locate
psbZ gene + 36400 36588 189 Locate
trnG-GCC gene + 36860 36930 71 Locate
trnfM-CAU gene − 37083 37156 74 Locate
rps14 gene − 37306 37608 303 Locate
psaB gene − 37736 39940 2205 Locate
psaA gene − 39966 42218 2253 Locate
ycf3 gene − 42888 44810 1923 Locate
trnS-GGA gene + 45684 45770 87 Locate
rps4 gene − 46056 46661 606 Locate
trnT-UGU gene − 47003 47075 73 Locate
trnL-UAA gene + 47760 48321 562 Locate
trnF-GAA gene + 48628 48700 73 Locate
ndhJ gene − 49349 49825 477 Locate
ndhK gene − 49933 50610 678 Locate
ndhC gene − 50663 51025 363 Locate
trnV-UAC gene − 51881 52533 653 Locate
trnM-CAU gene + 52714 52786 73 Locate
atpE gene − 53002 53403 402 Locate
atpB gene − 53400 54887 1488 Locate
rbcL gene + 55638 57098 1461 Locate
accD gene + 57828 59294 1467 Locate
psaI gene + 59868 59978 111 Locate
ycf4 gene + 60412 60966 555 Locate
cemA gene + 61704 62303 600 Locate
petA gene + 62510 63472 963 Locate
psbJ gene − 64510 64632 123 Locate
psbL gene − 64766 64987 222 Locate
psbF gene − 64906 65025 120 Locate
psbE gene − 65040 65291 252 Locate
petL gene + 66200 66295 96 Locate
petG gene + 66471 66584 114 Locate
trnW-CCA gene − 66703 66776 74 Locate
trnP-UGG gene − 66946 67019 74 Locate
psaJ gene + 67292 67426 135 Locate
rpl33 gene + 67900 68100 201 Locate
rps18 gene + 68275 68580 306 Locate
rpl20 gene − 68817 69203 387 Locate
rps12 gene − 70003 70116 114 Locate
clpP gene − 70259 72191 1933 Locate
psbB gene + 72658 74184 1527 Locate
psbT gene + 74376 74477 102 Locate
psbN gene − 74552 74683 132 Locate
psbH gene + 74787 75008 222 Locate
petB gene + 75133 76500 1368 Locate
petD gene + 76689 77890 1202 Locate
rpoA gene − 78053 79066 1014 Locate
rps11 gene − 79138 79554 417 Locate
rpl36 gene − 79656 79769 114 Locate
infA gene − 79865 80098 234 Locate
rps8 gene − 80218 80628 411 Locate
rpl14 gene − 80798 81166 369 Locate
rpl16 gene − 81293 82519 1227 Locate
rps3 gene − 82674 83336 663 Locate
rpl22 gene − 83338 83793 456 Locate
rps19 gene − 83853 84131 279 Locate
rpl2 gene − 84186 85668 1483 Locate
rpl23 gene − 85687 85968 282 Locate
trnI-CAU gene − 86128 86201 74 Locate
ycf2 gene + 86290 93099 6810 Locate
ycf15 gene + 93190 93438 249 Locate
trnL-CAA gene − 93694 93774 81 Locate
ndhB gene − 94317 96528 2212 Locate
rps7 gene − 96803 97270 468 Locate
rps12 gene − 97324 98114 791 Locate
trnV-GAC gene + 99692 99763 72 Locate
rrn16 gene + 99991 101481 1491 Locate
trnI-GAU gene + 101780 102800 1021 Locate
trnA-UGC gene + 102865 103747 883 Locate
rrn23 gene + 103917 106729 2813 Locate
rrn4.5 gene + 106828 106930 103 Locate
rrn5 gene + 107178 107298 121 Locate
trnR-ACG gene + 107533 107606 74 Locate
trnN-GUU gene − 108153 108224 72 Locate
ndhF gene − 109301 111541 2241 Locate
rpl32 gene + 112062 112238 177 Locate
trnL-UAG gene + 112675 112754 80 Locate
ccsA gene + 112851 113825 975 Locate
ndhD gene − 114058 115581 1524 Locate
psaC gene − 115680 115925 246 Locate
ndhE gene − 116182 116487 306 Locate
ndhG gene − 116718 117248 531 Locate
ndhI gene − 117614 118114 501 Locate
ndhA gene − 118195 120292 2098 Locate
ndhH gene − 120294 121505 1212 Locate
rps15 gene − 121578 121850 273 Locate
ycf1 gene − 122062 127707 5646 Locate
trnN-GUU gene + 127926 127997 72 Locate
trnR-ACG gene − 128544 128617 74 Locate
rrn5 gene − 128852 128972 121 Locate
rrn4.5 gene − 129220 129322 103 Locate
rrn23 gene − 129421 132233 2813 Locate
trnA-UGC gene − 132403 133285 883 Locate
trnI-GAU gene − 133350 134370 1021 Locate
ycf68 gene − 133976 134215 240 Locate
rrn16 gene − 134669 136159 1491 Locate
trnV-GAC gene − 136387 136458 72 Locate
rps12 gene + 138036 138826 791 Locate
rps7 gene + 138880 139347 468 Locate
ndhB gene + 139622 141833 2212 Locate
trnL-CAA gene + 142376 142456 81 Locate
ycf15 gene − 142712 142960 249 Locate
ycf2 gene − 143051 149860 6810 Locate
trnI-CAU gene + 149949 150022 74 Locate
rpl23 gene + 150182 150463 282 Locate
rpl2 gene + 150482 151964 1483 Locate
Status Available
Accession PQ059322.1
Length 152,059 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources