Scutellaria nana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420969.1 · 3–76 bp · −
psbA · MW420969.1 · 364–1,422 bp · −
trnK-UUU · MW420969.1 · 1,667–4,256 bp · −
matK · MW420969.1 · 1,958–3,493 bp · −
rps16 · MW420969.1 · 5,163–6,331 bp · −
trnQ-UUC · MW420969.1 · 7,457–7,528 bp · −
trnS-GCU · MW420969.1 · 8,657–8,744 bp · −
atpA · MW420969.1 · 10,519–12,042 bp · −
atpF · MW420969.1 · 12,116–13,342 bp · −
atpH · MW420969.1 · 13,702–13,947 bp · −
atpI · MW420969.1 · 14,945–15,688 bp · −
rps2 · MW420969.1 · 16,038–16,748 bp · −
rpoC2 · MW420969.1 · 16,965–21,170 bp · −
rpoC1 · MW420969.1 · 21,325–24,154 bp · −
rpoB · MW420969.1 · 24,181–27,393 bp · −
psbM · MW420969.1 · 30,433–30,537 bp · −
trnD-GUC · MW420969.1 · 31,063–31,136 bp · −
trnY-GUA · MW420969.1 · 31,250–31,333 bp · −
trnE-UUC · MW420969.1 · 31,393–31,465 bp · −
trnS-UCA · MW420969.1 · 36,097–36,189 bp · −
trnfM-CAU · MW420969.1 · 37,196–37,269 bp · −
rps14 · MW420969.1 · 37,419–37,721 bp · −
psaB · MW420969.1 · 37,847–40,051 bp · −
psaA · MW420969.1 · 40,077–42,329 bp · −
ycf3 · MW420969.1 · 43,003–44,943 bp · −
rps4 · MW420969.1 · 46,192–46,797 bp · −
trnT-UGU · MW420969.1 · 47,136–47,208 bp · −
ndhJ · MW420969.1 · 49,484–49,960 bp · −
ndhK · MW420969.1 · 50,069–50,746 bp · −
ndhC · MW420969.1 · 50,799–51,161 bp · −
trnV-UAC · MW420969.1 · 52,159–52,811 bp · −
atpE · MW420969.1 · 53,274–53,675 bp · −
atpB · MW420969.1 · 53,672–55,159 bp · −
pabJ · MW420969.1 · 64,922–65,044 bp · −
psbL · MW420969.1 · 65,179–65,295 bp · −
psbF · MW420969.1 · 65,319–65,438 bp · −
psbE · MW420969.1 · 65,453–65,704 bp · −
trnW-CCA · MW420969.1 · 67,115–67,188 bp · −
trnP-UGG · MW420969.1 · 67,358–67,431 bp · −
rpl20 · MW420969.1 · 69,227–69,613 bp · −
rps12 · MW420969.1 · 70,398–70,523 bp · −
rps12 · MW420969.1 · 97,736–98,526 bp · −
clpP · MW420969.1 · 70,666–72,598 bp · −
psbN · MW420969.1 · 74,965–75,096 bp · −
rpoA · MW420969.1 · 78,467–79,480 bp · −
rps11 · MW420969.1 · 79,552–79,968 bp · −
rpl36 · MW420969.1 · 80,070–80,183 bp · −
infA · MW420969.1 · 80,279–80,512 bp · −
rps8 · MW420969.1 · 80,632–81,042 bp · −
rpl14 · MW420969.1 · 81,210–81,578 bp · −
rpl16 · MW420969.1 · 81,705–82,931 bp · −
rps3 · MW420969.1 · 83,086–83,748 bp · −
rpl22 · MW420969.1 · 83,750–84,205 bp · −
rps19 · MW420969.1 · 84,265–84,543 bp · −
rpl2 · MW420969.1 · 84,598–86,080 bp · −
rpl23 · MW420969.1 · 86,099–86,380 bp · −
trnI-CAU · MW420969.1 · 86,540–86,613 bp · −
trnL-CAA · MW420969.1 · 94,106–94,186 bp · −
ndhB · MW420969.1 · 94,729–96,940 bp · −
rps7 · MW420969.1 · 97,215–97,682 bp · −
ndhF · MW420969.1 · 109,715–111,955 bp · −
ndhD · MW420969.1 · 114,459–115,979 bp · −
psaC · MW420969.1 · 116,081–116,326 bp · −
ndhE · MW420969.1 · 116,583–116,888 bp · −
ndhG · MW420969.1 · 117,098–117,628 bp · −
ndhI · MW420969.1 · 117,994–118,494 bp · −
ndhA · MW420969.1 · 118,575–120,667 bp · −
ndhH · MW420969.1 · 120,669–121,850 bp · −
rps15 · MW420969.1 · 121,953–122,225 bp · −
ycf1 · MW420969.1 · 122,515–128,064 bp · −
trnR-ACG · MW420969.1 · 129,013–129,086 bp · −
rrn5 · MW420969.1 · 129,321–129,441 bp · −
rrn4.5 · MW420969.1 · 129,689–129,791 bp · −
rrn23 · MW420969.1 · 129,890–132,702 bp · −
trnA-UGC · MW420969.1 · 132,872–133,755 bp · −
trnI-GAU · MW420969.1 · 133,821–134,840 bp · −
rrn16 · MW420969.1 · 135,139–136,629 bp · −
trnV-GAC · MW420969.1 · 136,857–136,928 bp · −
ycf15 · MW420969.1 · 143,182–143,379 bp · −
ycf2 · MW420969.1 · 143,521–150,330 bp · −
psbK · MW420969.1 · 7,853–8,038 bp · +
psbI · MW420969.1 · 8,430–8,540 bp · +
trnG-CGA · MW420969.1 · 9,416–10,176 bp · +
trnR-UCU · MW420969.1 · 10,351–10,422 bp · +
trnC-GCA · MW420969.1 · 28,555–28,625 bp · +
petN · MW420969.1 · 29,339–29,428 bp · +
trnT-GGU · MW420969.1 · 32,048–32,119 bp · +
psbD · MW420969.1 · 33,423–34,484 bp · +
psbC · MW420969.1 · 34,432–35,853 bp · +
psbZ · MW420969.1 · 36,511–36,699 bp · +
trnG-GCC · MW420969.1 · 36,971–37,041 bp · +
trnS-GGA · MW420969.1 · 45,820–45,906 bp · +
trnL-UAA · MW420969.1 · 47,883–48,452 bp · +
trnF-GAA · MW420969.1 · 48,757–48,829 bp · +
trnM-CAU · MW420969.1 · 52,992–53,064 bp · +
rbcL · MW420969.1 · 55,933–57,375 bp · +
accD · MW420969.1 · 58,105–59,571 bp · +
psaI · MW420969.1 · 60,288–60,398 bp · +
ycf4 · MW420969.1 · 60,824–61,378 bp · +
cemA · MW420969.1 · 62,064–62,723 bp · +
petA · MW420969.1 · 62,930–63,892 bp · +
petL · MW420969.1 · 66,612–66,707 bp · +
petG · MW420969.1 · 66,883–66,996 bp · +
psbJ · MW420969.1 · 67,704–67,838 bp · +
rpl33 · MW420969.1 · 68,310–68,510 bp · +
rps18 · MW420969.1 · 68,685–68,990 bp · +
rps12 · MW420969.1 · 138,506–139,296 bp · +
psbB · MW420969.1 · 73,072–74,598 bp · +
psbT · MW420969.1 · 74,790–74,891 bp · +
psbH · MW420969.1 · 75,200–75,421 bp · +
petB · MW420969.1 · 75,546–76,914 bp · +
petD · MW420969.1 · 77,103–78,304 bp · +
ycf2 · MW420969.1 · 86,702–93,511 bp · +
ycf15 · MW420969.1 · 93,653–93,850 bp · +
trnV-GAC · MW420969.1 · 100,104–100,175 bp · +
rrn16 · MW420969.1 · 100,403–101,893 bp · +
trnI-GAU · MW420969.1 · 102,192–103,211 bp · +
trnA-UGC · MW420969.1 · 103,277–104,160 bp · +
rrn23 · MW420969.1 · 104,330–107,142 bp · +
rrn4.5 · MW420969.1 · 107,241–107,343 bp · +
rrn5 · MW420969.1 · 107,591–107,711 bp · +
trnR-ACG · MW420969.1 · 107,946–108,019 bp · +
trnN-GUU · MW420969.1 · 108,567–108,638 bp · +
rpl32 · MW420969.1 · 112,479–112,655 bp · +
trnL-UAG · MW420969.1 · 113,075–113,154 bp · +
ccsA · MW420969.1 · 113,252–114,226 bp · +
trnN-GUU · MW420969.1 · 128,394–128,465 bp · +
rps7 · MW420969.1 · 139,350–139,817 bp · +
ndhB · MW420969.1 · 140,092–142,303 bp · +
trnL-CAA · MW420969.1 · 142,846–142,926 bp · +
trnI-CAU · MW420969.1 · 150,419–150,492 bp · +
rpl23 · MW420969.1 · 150,652–150,933 bp · +
rpl2 · MW420969.1 · 150,952–152,434 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria nana
ANNOTATED PLASTOME
MW420969.1
152,529 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38132 76264 114397 152529 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 364 1422 1059 Locate
trnK-UUU gene − 1667 4256 2590 Locate
matK gene − 1958 3493 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUC gene − 7457 7528 72 Locate
psbK gene + 7853 8038 186 Locate
psbI gene + 8430 8540 111 Locate
trnS-GCU gene − 8657 8744 88 Locate
trnG-CGA gene + 9416 10176 761 Locate
trnR-UCU gene + 10351 10422 72 Locate
atpA gene − 10519 12042 1524 Locate
atpF gene − 12116 13342 1227 Locate
atpH gene − 13702 13947 246 Locate
atpI gene − 14945 15688 744 Locate
rps2 gene − 16038 16748 711 Locate
rpoC2 gene − 16965 21170 4206 Locate
rpoC1 gene − 21325 24154 2830 Locate
rpoB gene − 24181 27393 3213 Locate
trnC-GCA gene + 28555 28625 71 Locate
petN gene + 29339 29428 90 Locate
psbM gene − 30433 30537 105 Locate
trnD-GUC gene − 31063 31136 74 Locate
trnY-GUA gene − 31250 31333 84 Locate
trnE-UUC gene − 31393 31465 73 Locate
trnT-GGU gene + 32048 32119 72 Locate
psbD gene + 33423 34484 1062 Locate
psbC gene + 34432 35853 1422 Locate
trnS-UCA gene − 36097 36189 93 Locate
psbZ gene + 36511 36699 189 Locate
trnG-GCC gene + 36971 37041 71 Locate
trnfM-CAU gene − 37196 37269 74 Locate
rps14 gene − 37419 37721 303 Locate
psaB gene − 37847 40051 2205 Locate
psaA gene − 40077 42329 2253 Locate
ycf3 gene − 43003 44943 1941 Locate
trnS-GGA gene + 45820 45906 87 Locate
rps4 gene − 46192 46797 606 Locate
trnT-UGU gene − 47136 47208 73 Locate
trnL-UAA gene + 47883 48452 570 Locate
trnF-GAA gene + 48757 48829 73 Locate
ndhJ gene − 49484 49960 477 Locate
ndhK gene − 50069 50746 678 Locate
ndhC gene − 50799 51161 363 Locate
trnV-UAC gene − 52159 52811 653 Locate
trnM-CAU gene + 52992 53064 73 Locate
atpE gene − 53274 53675 402 Locate
atpB gene − 53672 55159 1488 Locate
rbcL gene + 55933 57375 1443 Locate
accD gene + 58105 59571 1467 Locate
psaI gene + 60288 60398 111 Locate
ycf4 gene + 60824 61378 555 Locate
cemA gene + 62064 62723 660 Locate
petA gene + 62930 63892 963 Locate
pabJ gene − 64922 65044 123 Locate
psbL gene − 65179 65295 117 Locate
psbF gene − 65319 65438 120 Locate
psbE gene − 65453 65704 252 Locate
petL gene + 66612 66707 96 Locate
petG gene + 66883 66996 114 Locate
trnW-CCA gene − 67115 67188 74 Locate
trnP-UGG gene − 67358 67431 74 Locate
psbJ gene + 67704 67838 135 Locate
rpl33 gene + 68310 68510 201 Locate
rps18 gene + 68685 68990 306 Locate
rpl20 gene − 69227 69613 387 Locate
rps12 gene − 70398 70523 126 Locate
clpP gene − 70666 72598 1933 Locate
psbB gene + 73072 74598 1527 Locate
psbT gene + 74790 74891 102 Locate
psbN gene − 74965 75096 132 Locate
psbH gene + 75200 75421 222 Locate
petB gene + 75546 76914 1369 Locate
petD gene + 77103 78304 1202 Locate
rpoA gene − 78467 79480 1014 Locate
rps11 gene − 79552 79968 417 Locate
rpl36 gene − 80070 80183 114 Locate
infA gene − 80279 80512 234 Locate
rps8 gene − 80632 81042 411 Locate
rpl14 gene − 81210 81578 369 Locate
rpl16 gene − 81705 82931 1227 Locate
rps3 gene − 83086 83748 663 Locate
rpl22 gene − 83750 84205 456 Locate
rps19 gene − 84265 84543 279 Locate
rpl2 gene − 84598 86080 1483 Locate
rpl23 gene − 86099 86380 282 Locate
trnI-CAU gene − 86540 86613 74 Locate
ycf2 gene + 86702 93511 6810 Locate
ycf15 gene + 93653 93850 198 Locate
trnL-CAA gene − 94106 94186 81 Locate
ndhB gene − 94729 96940 2212 Locate
rps7 gene − 97215 97682 468 Locate
rps12 gene − 97736 98526 791 Locate
trnV-GAC gene + 100104 100175 72 Locate
rrn16 gene + 100403 101893 1491 Locate
trnI-GAU gene + 102192 103211 1020 Locate
trnA-UGC gene + 103277 104160 884 Locate
rrn23 gene + 104330 107142 2813 Locate
rrn4.5 gene + 107241 107343 103 Locate
rrn5 gene + 107591 107711 121 Locate
trnR-ACG gene + 107946 108019 74 Locate
trnN-GUU gene + 108567 108638 72 Locate
ndhF gene − 109715 111955 2241 Locate
rpl32 gene + 112479 112655 177 Locate
trnL-UAG gene + 113075 113154 80 Locate
ccsA gene + 113252 114226 975 Locate
ndhD gene − 114459 115979 1521 Locate
psaC gene − 116081 116326 246 Locate
ndhE gene − 116583 116888 306 Locate
ndhG gene − 117098 117628 531 Locate
ndhI gene − 117994 118494 501 Locate
ndhA gene − 118575 120667 2093 Locate
ndhH gene − 120669 121850 1182 Locate
rps15 gene − 121953 122225 273 Locate
ycf1 gene − 122515 128064 5550 Locate
trnN-GUU gene + 128394 128465 72 Locate
trnR-ACG gene − 129013 129086 74 Locate
rrn5 gene − 129321 129441 121 Locate
rrn4.5 gene − 129689 129791 103 Locate
rrn23 gene − 129890 132702 2813 Locate
trnA-UGC gene − 132872 133755 884 Locate
trnI-GAU gene − 133821 134840 1020 Locate
rrn16 gene − 135139 136629 1491 Locate
trnV-GAC gene − 136857 136928 72 Locate
rps12 gene + 138506 139296 791 Locate
rps7 gene + 139350 139817 468 Locate
ndhB gene + 140092 142303 2212 Locate
trnL-CAA gene + 142846 142926 81 Locate
ycf15 gene − 143182 143379 198 Locate
ycf2 gene − 143521 150330 6810 Locate
trnI-CAU gene + 150419 150492 74 Locate
rpl23 gene + 150652 150933 282 Locate
rpl2 gene + 150952 152434 1483 Locate
Status Available
Accession MW420969.1
Length 152,529 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources