Scutellaria nervosa chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058257.1 · 3–76 bp · −
psbA · PQ058257.1 · 377–1,435 bp · −
trnK-UUU · PQ058257.1 · 1,668–4,255 bp · −
matK · PQ058257.1 · 1,963–3,498 bp · −
rps16 · PQ058257.1 · 5,162–6,330 bp · −
trnQ-UUG · PQ058257.1 · 7,471–7,542 bp · −
trnS-GCU · PQ058257.1 · 8,677–8,764 bp · −
atpA · PQ058257.1 · 10,563–12,086 bp · −
atpF · PQ058257.1 · 12,160–13,386 bp · −
atpH · PQ058257.1 · 13,748–13,993 bp · −
atpI · PQ058257.1 · 15,002–15,745 bp · −
rps2 · PQ058257.1 · 16,113–16,823 bp · −
rpoC2 · PQ058257.1 · 17,040–21,245 bp · −
rpoC1 · PQ058257.1 · 21,400–24,230 bp · −
rpoB · PQ058257.1 · 24,257–27,469 bp · −
psbM · PQ058257.1 · 30,531–30,635 bp · −
trnD-GUC · PQ058257.1 · 31,160–31,233 bp · −
trnY-GUA · PQ058257.1 · 31,347–31,430 bp · −
trnE-UUC · PQ058257.1 · 31,490–31,562 bp · −
trnS-UGA · PQ058257.1 · 36,200–36,291 bp · −
trnfM-CAU · PQ058257.1 · 37,297–37,370 bp · −
rps14 · PQ058257.1 · 37,520–37,822 bp · −
psaB · PQ058257.1 · 37,950–40,154 bp · −
psaA · PQ058257.1 · 40,180–42,432 bp · −
ycf3 · PQ058257.1 · 43,107–45,031 bp · −
rps4 · PQ058257.1 · 46,289–46,894 bp · −
trnT-UGU · PQ058257.1 · 47,233–47,305 bp · −
ndhJ · PQ058257.1 · 49,586–50,062 bp · −
ndhK · PQ058257.1 · 50,170–50,847 bp · −
ndhC · PQ058257.1 · 50,900–51,262 bp · −
trnV-UAC · PQ058257.1 · 52,261–52,913 bp · −
atpE · PQ058257.1 · 53,377–53,778 bp · −
atpB · PQ058257.1 · 53,775–55,262 bp · −
psbJ · PQ058257.1 · 65,014–65,136 bp · −
psbL · PQ058257.1 · 65,270–65,386 bp · −
psbF · PQ058257.1 · 65,410–65,529 bp · −
psbE · PQ058257.1 · 65,544–65,795 bp · −
trnW-CCA · PQ058257.1 · 67,207–67,280 bp · −
trnP-UGG · PQ058257.1 · 67,451–67,524 bp · −
rpl20 · PQ058257.1 · 69,321–69,707 bp · −
rps12 · PQ058257.1 · 70,489–70,614 bp · −
rps12 · PQ058257.1 · 97,856–98,646 bp · −
clpP · PQ058257.1 · 70,757–72,690 bp · −
psbN · PQ058257.1 · 75,046–75,177 bp · −
rpoA · PQ058257.1 · 78,560–79,573 bp · −
rps11 · PQ058257.1 · 79,645–80,061 bp · −
rpl36 · PQ058257.1 · 80,163–80,276 bp · −
infA · PQ058257.1 · 80,372–80,605 bp · −
rps8 · PQ058257.1 · 80,725–81,135 bp · −
rpl14 · PQ058257.1 · 81,303–81,671 bp · −
rpl16 · PQ058257.1 · 81,798–83,051 bp · −
rps3 · PQ058257.1 · 83,206–83,868 bp · −
rpl22 · PQ058257.1 · 83,870–84,325 bp · −
rps19 · PQ058257.1 · 84,385–84,663 bp · −
rpl2 · PQ058257.1 · 84,718–86,200 bp · −
rpl23 · PQ058257.1 · 86,219–86,500 bp · −
trnI-CAU · PQ058257.1 · 86,660–86,733 bp · −
trnL-CAA · PQ058257.1 · 94,226–94,306 bp · −
ndhB · PQ058257.1 · 94,849–97,060 bp · −
rps7 · PQ058257.1 · 97,335–97,802 bp · −
trnN-GUU · PQ058257.1 · 108,683–108,754 bp · −
ndhF · PQ058257.1 · 109,831–112,071 bp · −
ndhD · PQ058257.1 · 114,584–116,086 bp · −
psaC · PQ058257.1 · 116,206–116,451 bp · −
ndhE · PQ058257.1 · 116,708–117,013 bp · −
ndhG · PQ058257.1 · 117,244–117,774 bp · −
ndhI · PQ058257.1 · 118,139–118,639 bp · −
ndhA · PQ058257.1 · 118,720–120,812 bp · −
ndhH · PQ058257.1 · 120,814–122,025 bp · −
rps15 · PQ058257.1 · 122,098–122,430 bp · −
ycf1 · PQ058257.1 · 122,639–128,287 bp · −
trnR-ACG · PQ058257.1 · 129,124–129,197 bp · −
rrn5 · PQ058257.1 · 129,432–129,552 bp · −
rrn4.5 · PQ058257.1 · 129,800–129,902 bp · −
rrn23 · PQ058257.1 · 130,001–132,813 bp · −
trnA-UGC · PQ058257.1 · 132,983–133,863 bp · −
trnI-GAU · PQ058257.1 · 133,928–134,948 bp · −
ycf68 · PQ058257.1 · 134,554–134,793 bp · −
rrn16 · PQ058257.1 · 135,247–136,737 bp · −
trnV-GAC · PQ058257.1 · 136,965–137,036 bp · −
ycf15 · PQ058257.1 · 143,290–143,487 bp · −
ycf2 · PQ058257.1 · 143,629–150,438 bp · −
psbK · PQ058257.1 · 7,873–8,058 bp · +
psbI · PQ058257.1 · 8,449–8,559 bp · +
trnG-UCC · PQ058257.1 · 9,454–10,214 bp · +
trnR-UCU · PQ058257.1 · 10,389–10,460 bp · +
trnC-GCA · PQ058257.1 · 28,637–28,707 bp · +
petN · PQ058257.1 · 29,421–29,510 bp · +
trnT-GGU · PQ058257.1 · 32,145–32,216 bp · +
psbD · PQ058257.1 · 33,527–34,588 bp · +
psbC · PQ058257.1 · 34,536–35,957 bp · +
psbZ · PQ058257.1 · 36,612–36,800 bp · +
trnG-GCC · PQ058257.1 · 37,072–37,142 bp · +
trnS-GGA · PQ058257.1 · 45,917–46,003 bp · +
trnL-UAA · PQ058257.1 · 47,991–48,559 bp · +
trnF-GAA · PQ058257.1 · 48,865–48,937 bp · +
trnM-CAU · PQ058257.1 · 53,095–53,167 bp · +
rbcL · PQ058257.1 · 56,014–57,477 bp · +
accD · PQ058257.1 · 58,207–59,673 bp · +
psaI · PQ058257.1 · 60,390–60,500 bp · +
ycf4 · PQ058257.1 · 60,926–61,480 bp · +
cemA · PQ058257.1 · 62,222–62,821 bp · +
petA · PQ058257.1 · 63,028–63,990 bp · +
petL · PQ058257.1 · 66,704–66,799 bp · +
petG · PQ058257.1 · 66,975–67,088 bp · +
psaJ · PQ058257.1 · 67,797–67,931 bp · +
rpl33 · PQ058257.1 · 68,404–68,604 bp · +
rps18 · PQ058257.1 · 68,779–69,084 bp · +
rps12 · PQ058257.1 · 138,614–139,404 bp · +
psbB · PQ058257.1 · 73,153–74,679 bp · +
psbT · PQ058257.1 · 74,871–74,972 bp · +
psbH · PQ058257.1 · 75,281–75,502 bp · +
petB · PQ058257.1 · 75,627–77,007 bp · +
petD · PQ058257.1 · 77,196–78,397 bp · +
ycf2 · PQ058257.1 · 86,822–93,631 bp · +
ycf15 · PQ058257.1 · 93,773–93,970 bp · +
trnV-GAC · PQ058257.1 · 100,224–100,295 bp · +
rrn16 · PQ058257.1 · 100,523–102,013 bp · +
trnI-GAU · PQ058257.1 · 102,312–103,332 bp · +
trnA-UGC · PQ058257.1 · 103,397–104,277 bp · +
rrn23 · PQ058257.1 · 104,447–107,259 bp · +
rrn4.5 · PQ058257.1 · 107,358–107,460 bp · +
rrn5 · PQ058257.1 · 107,708–107,828 bp · +
trnR-ACG · PQ058257.1 · 108,063–108,136 bp · +
rpl32 · PQ058257.1 · 112,593–112,769 bp · +
trnL-UAG · PQ058257.1 · 113,199–113,278 bp · +
ccsA · PQ058257.1 · 113,377–114,351 bp · +
trnN-GUU · PQ058257.1 · 128,506–128,577 bp · +
rps7 · PQ058257.1 · 139,458–139,925 bp · +
ndhB · PQ058257.1 · 140,200–142,411 bp · +
trnL-CAA · PQ058257.1 · 142,954–143,034 bp · +
trnI-CAU · PQ058257.1 · 150,527–150,600 bp · +
rpl23 · PQ058257.1 · 150,760–151,041 bp · +
rpl2 · PQ058257.1 · 151,060–152,542 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria nervosa
ANNOTATED PLASTOME
PQ058257.1
152,637 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38159 76318 114478 152637 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 377 1435 1059 Locate
trnK-UUU gene − 1668 4255 2588 Locate
matK gene − 1963 3498 1536 Locate
rps16 gene − 5162 6330 1169 Locate
trnQ-UUG gene − 7471 7542 72 Locate
psbK gene + 7873 8058 186 Locate
psbI gene + 8449 8559 111 Locate
trnS-GCU gene − 8677 8764 88 Locate
trnG-UCC gene + 9454 10214 761 Locate
trnR-UCU gene + 10389 10460 72 Locate
atpA gene − 10563 12086 1524 Locate
atpF gene − 12160 13386 1227 Locate
atpH gene − 13748 13993 246 Locate
atpI gene − 15002 15745 744 Locate
rps2 gene − 16113 16823 711 Locate
rpoC2 gene − 17040 21245 4206 Locate
rpoC1 gene − 21400 24230 2831 Locate
rpoB gene − 24257 27469 3213 Locate
trnC-GCA gene + 28637 28707 71 Locate
petN gene + 29421 29510 90 Locate
psbM gene − 30531 30635 105 Locate
trnD-GUC gene − 31160 31233 74 Locate
trnY-GUA gene − 31347 31430 84 Locate
trnE-UUC gene − 31490 31562 73 Locate
trnT-GGU gene + 32145 32216 72 Locate
psbD gene + 33527 34588 1062 Locate
psbC gene + 34536 35957 1422 Locate
trnS-UGA gene − 36200 36291 92 Locate
psbZ gene + 36612 36800 189 Locate
trnG-GCC gene + 37072 37142 71 Locate
trnfM-CAU gene − 37297 37370 74 Locate
rps14 gene − 37520 37822 303 Locate
psaB gene − 37950 40154 2205 Locate
psaA gene − 40180 42432 2253 Locate
ycf3 gene − 43107 45031 1925 Locate
trnS-GGA gene + 45917 46003 87 Locate
rps4 gene − 46289 46894 606 Locate
trnT-UGU gene − 47233 47305 73 Locate
trnL-UAA gene + 47991 48559 569 Locate
trnF-GAA gene + 48865 48937 73 Locate
ndhJ gene − 49586 50062 477 Locate
ndhK gene − 50170 50847 678 Locate
ndhC gene − 50900 51262 363 Locate
trnV-UAC gene − 52261 52913 653 Locate
trnM-CAU gene + 53095 53167 73 Locate
atpE gene − 53377 53778 402 Locate
atpB gene − 53775 55262 1488 Locate
rbcL gene + 56014 57477 1464 Locate
accD gene + 58207 59673 1467 Locate
psaI gene + 60390 60500 111 Locate
ycf4 gene + 60926 61480 555 Locate
cemA gene + 62222 62821 600 Locate
petA gene + 63028 63990 963 Locate
psbJ gene − 65014 65136 123 Locate
psbL gene − 65270 65386 117 Locate
psbF gene − 65410 65529 120 Locate
psbE gene − 65544 65795 252 Locate
petL gene + 66704 66799 96 Locate
petG gene + 66975 67088 114 Locate
trnW-CCA gene − 67207 67280 74 Locate
trnP-UGG gene − 67451 67524 74 Locate
psaJ gene + 67797 67931 135 Locate
rpl33 gene + 68404 68604 201 Locate
rps18 gene + 68779 69084 306 Locate
rpl20 gene − 69321 69707 387 Locate
rps12 gene − 70489 70614 126 Locate
clpP gene − 70757 72690 1934 Locate
psbB gene + 73153 74679 1527 Locate
psbT gene + 74871 74972 102 Locate
psbN gene − 75046 75177 132 Locate
psbH gene + 75281 75502 222 Locate
petB gene + 75627 77007 1381 Locate
petD gene + 77196 78397 1202 Locate
rpoA gene − 78560 79573 1014 Locate
rps11 gene − 79645 80061 417 Locate
rpl36 gene − 80163 80276 114 Locate
infA gene − 80372 80605 234 Locate
rps8 gene − 80725 81135 411 Locate
rpl14 gene − 81303 81671 369 Locate
rpl16 gene − 81798 83051 1254 Locate
rps3 gene − 83206 83868 663 Locate
rpl22 gene − 83870 84325 456 Locate
rps19 gene − 84385 84663 279 Locate
rpl2 gene − 84718 86200 1483 Locate
rpl23 gene − 86219 86500 282 Locate
trnI-CAU gene − 86660 86733 74 Locate
ycf2 gene + 86822 93631 6810 Locate
ycf15 gene + 93773 93970 198 Locate
trnL-CAA gene − 94226 94306 81 Locate
ndhB gene − 94849 97060 2212 Locate
rps7 gene − 97335 97802 468 Locate
rps12 gene − 97856 98646 791 Locate
trnV-GAC gene + 100224 100295 72 Locate
rrn16 gene + 100523 102013 1491 Locate
trnI-GAU gene + 102312 103332 1021 Locate
trnA-UGC gene + 103397 104277 881 Locate
rrn23 gene + 104447 107259 2813 Locate
rrn4.5 gene + 107358 107460 103 Locate
rrn5 gene + 107708 107828 121 Locate
trnR-ACG gene + 108063 108136 74 Locate
trnN-GUU gene − 108683 108754 72 Locate
ndhF gene − 109831 112071 2241 Locate
rpl32 gene + 112593 112769 177 Locate
trnL-UAG gene + 113199 113278 80 Locate
ccsA gene + 113377 114351 975 Locate
ndhD gene − 114584 116086 1503 Locate
psaC gene − 116206 116451 246 Locate
ndhE gene − 116708 117013 306 Locate
ndhG gene − 117244 117774 531 Locate
ndhI gene − 118139 118639 501 Locate
ndhA gene − 118720 120812 2093 Locate
ndhH gene − 120814 122025 1212 Locate
rps15 gene − 122098 122430 333 Locate
ycf1 gene − 122639 128287 5649 Locate
trnN-GUU gene + 128506 128577 72 Locate
trnR-ACG gene − 129124 129197 74 Locate
rrn5 gene − 129432 129552 121 Locate
rrn4.5 gene − 129800 129902 103 Locate
rrn23 gene − 130001 132813 2813 Locate
trnA-UGC gene − 132983 133863 881 Locate
trnI-GAU gene − 133928 134948 1021 Locate
ycf68 gene − 134554 134793 240 Locate
rrn16 gene − 135247 136737 1491 Locate
trnV-GAC gene − 136965 137036 72 Locate
rps12 gene + 138614 139404 791 Locate
rps7 gene + 139458 139925 468 Locate
ndhB gene + 140200 142411 2212 Locate
trnL-CAA gene + 142954 143034 81 Locate
ycf15 gene − 143290 143487 198 Locate
ycf2 gene − 143629 150438 6810 Locate
trnI-CAU gene + 150527 150600 74 Locate
rpl23 gene + 150760 151041 282 Locate
rpl2 gene + 151060 152542 1483 Locate
Status Available
Accession PQ058257.1
Length 152,637 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources