Scutellaria nummulariifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420960.1 · 3–76 bp · −
psbA · MW420960.1 · 369–1,427 bp · −
trnK-UUU · MW420960.1 · 1,672–4,251 bp · −
matK · MW420960.1 · 1,963–3,498 bp · −
rps16 · MW420960.1 · 5,155–6,325 bp · −
trnQ-UUC · MW420960.1 · 7,441–7,512 bp · −
trnS-GCU · MW420960.1 · 8,636–8,723 bp · −
atpA · MW420960.1 · 10,526–12,049 bp · −
atpF · MW420960.1 · 12,132–13,353 bp · −
atpH · MW420960.1 · 13,730–13,975 bp · −
atpI · MW420960.1 · 14,972–15,715 bp · −
rps2 · MW420960.1 · 16,070–16,780 bp · −
rpoC2 · MW420960.1 · 16,997–21,202 bp · −
rpoC1 · MW420960.1 · 21,357–24,194 bp · −
rpoB · MW420960.1 · 24,221–27,433 bp · −
psbM · MW420960.1 · 30,526–30,639 bp · −
trnD-GUC · MW420960.1 · 31,167–31,240 bp · −
trnY-GUA · MW420960.1 · 31,354–31,437 bp · −
trnE-UUC · MW420960.1 · 31,497–31,569 bp · −
trnS-UCA · MW420960.1 · 36,201–36,293 bp · −
trnfM-CAU · MW420960.1 · 37,296–37,369 bp · −
rps14 · MW420960.1 · 37,519–37,821 bp · −
psaB · MW420960.1 · 37,944–40,148 bp · −
psaA · MW420960.1 · 40,174–42,426 bp · −
ycf3 · MW420960.1 · 43,100–45,023 bp · −
rps4 · MW420960.1 · 46,280–46,885 bp · −
trnT-UGU · MW420960.1 · 47,227–47,299 bp · −
ndhJ · MW420960.1 · 49,564–50,040 bp · −
ndhK · MW420960.1 · 50,148–50,825 bp · −
ndhC · MW420960.1 · 50,878–51,240 bp · −
trnV-UAC · MW420960.1 · 52,237–52,889 bp · −
atpE · MW420960.1 · 53,352–53,753 bp · −
atpB · MW420960.1 · 53,750–55,237 bp · −
pabJ · MW420960.1 · 65,004–65,126 bp · −
psbL · MW420960.1 · 65,260–65,376 bp · −
psbF · MW420960.1 · 65,400–65,519 bp · −
psbE · MW420960.1 · 65,534–65,785 bp · −
trnW-CCA · MW420960.1 · 67,198–67,271 bp · −
trnP-UGG · MW420960.1 · 67,441–67,514 bp · −
rpl20 · MW420960.1 · 69,308–69,694 bp · −
rps12 · MW420960.1 · 70,478–70,603 bp · −
rps12 · MW420960.1 · 97,838–98,628 bp · −
clpP · MW420960.1 · 70,747–72,695 bp · −
psbN · MW420960.1 · 75,051–75,182 bp · −
rpoA · MW420960.1 · 78,549–79,562 bp · −
rps11 · MW420960.1 · 79,634–80,050 bp · −
rpl36 · MW420960.1 · 80,152–80,265 bp · −
infA · MW420960.1 · 80,361–80,594 bp · −
rps8 · MW420960.1 · 80,714–81,124 bp · −
rpl14 · MW420960.1 · 81,295–81,663 bp · −
rpl16 · MW420960.1 · 81,790–83,033 bp · −
rps3 · MW420960.1 · 83,188–83,850 bp · −
rpl22 · MW420960.1 · 83,852–84,307 bp · −
rps19 · MW420960.1 · 84,367–84,645 bp · −
rpl2 · MW420960.1 · 84,700–86,182 bp · −
rpl23 · MW420960.1 · 86,201–86,482 bp · −
trnI-CAU · MW420960.1 · 86,642–86,715 bp · −
trnL-CAA · MW420960.1 · 94,208–94,288 bp · −
ndhB · MW420960.1 · 94,831–97,042 bp · −
rps7 · MW420960.1 · 97,317–97,784 bp · −
ndhF · MW420960.1 · 109,807–112,047 bp · −
ndhD · MW420960.1 · 114,573–116,078 bp · −
psaC · MW420960.1 · 116,195–116,440 bp · −
ndhE · MW420960.1 · 116,697–117,002 bp · −
ndhG · MW420960.1 · 117,227–117,757 bp · −
ndhI · MW420960.1 · 118,122–118,622 bp · −
ndhA · MW420960.1 · 118,703–120,795 bp · −
ndhH · MW420960.1 · 120,797–121,978 bp · −
rps15 · MW420960.1 · 122,081–122,353 bp · −
ycf1 · MW420960.1 · 122,624–128,068 bp · −
trnR-ACG · MW420960.1 · 129,009–129,082 bp · −
rrn5 · MW420960.1 · 129,317–129,437 bp · −
rrn4.5 · MW420960.1 · 129,685–129,787 bp · −
rrn23 · MW420960.1 · 129,886–132,698 bp · −
trnA-UGC · MW420960.1 · 132,868–133,749 bp · −
trnI-GAU · MW420960.1 · 133,815–134,834 bp · −
rrn16 · MW420960.1 · 135,133–136,623 bp · −
trnV-GAC · MW420960.1 · 136,851–136,922 bp · −
ycf15 · MW420960.1 · 143,176–143,373 bp · −
ycf2 · MW420960.1 · 143,515–150,324 bp · −
psbK · MW420960.1 · 7,837–8,022 bp · +
psbI · MW420960.1 · 8,407–8,517 bp · +
trnG-CGA · MW420960.1 · 9,412–10,177 bp · +
trnR-UCU · MW420960.1 · 10,367–10,438 bp · +
trnC-GCA · MW420960.1 · 28,603–28,673 bp · +
petN · MW420960.1 · 29,384–29,473 bp · +
trnT-GGU · MW420960.1 · 32,152–32,223 bp · +
psbD · MW420960.1 · 33,529–34,590 bp · +
psbC · MW420960.1 · 34,538–35,959 bp · +
psbZ · MW420960.1 · 36,613–36,801 bp · +
trnG-GCC · MW420960.1 · 37,073–37,143 bp · +
trnS-GGA · MW420960.1 · 45,908–45,994 bp · +
trnL-UAA · MW420960.1 · 47,969–48,538 bp · +
trnF-GAA · MW420960.1 · 48,843–48,915 bp · +
trnM-CAU · MW420960.1 · 53,070–53,142 bp · +
rbcL · MW420960.1 · 56,009–57,451 bp · +
accD · MW420960.1 · 58,182–59,648 bp · +
psaI · MW420960.1 · 60,366–60,476 bp · +
ycf4 · MW420960.1 · 60,910–61,464 bp · +
cemA · MW420960.1 · 62,146–62,805 bp · +
petA · MW420960.1 · 63,012–63,974 bp · +
petL · MW420960.1 · 66,694–66,789 bp · +
petG · MW420960.1 · 66,966–67,079 bp · +
psbJ · MW420960.1 · 67,787–67,921 bp · +
rpl33 · MW420960.1 · 68,386–68,586 bp · +
rps18 · MW420960.1 · 68,761–69,066 bp · +
rps12 · MW420960.1 · 138,500–139,290 bp · +
psbB · MW420960.1 · 73,158–74,684 bp · +
psbT · MW420960.1 · 74,876–74,977 bp · +
psbH · MW420960.1 · 75,286–75,507 bp · +
petB · MW420960.1 · 75,632–77,002 bp · +
petD · MW420960.1 · 77,191–78,386 bp · +
ycf2 · MW420960.1 · 86,804–93,613 bp · +
ycf15 · MW420960.1 · 93,755–93,952 bp · +
trnV-GAC · MW420960.1 · 100,206–100,277 bp · +
rrn16 · MW420960.1 · 100,505–101,995 bp · +
trnI-GAU · MW420960.1 · 102,294–103,313 bp · +
trnA-UGC · MW420960.1 · 103,379–104,260 bp · +
rrn23 · MW420960.1 · 104,430–107,242 bp · +
rrn4.5 · MW420960.1 · 107,341–107,443 bp · +
rrn5 · MW420960.1 · 107,691–107,811 bp · +
trnR-ACG · MW420960.1 · 108,046–108,119 bp · +
trnN-GUU · MW420960.1 · 108,659–108,730 bp · +
rpl32 · MW420960.1 · 112,577–112,753 bp · +
trnL-UAG · MW420960.1 · 113,191–113,270 bp · +
ccsA · MW420960.1 · 113,366–114,340 bp · +
trnN-GUU · MW420960.1 · 128,398–128,469 bp · +
rps7 · MW420960.1 · 139,344–139,811 bp · +
ndhB · MW420960.1 · 140,086–142,297 bp · +
trnL-CAA · MW420960.1 · 142,840–142,920 bp · +
trnI-CAU · MW420960.1 · 150,413–150,486 bp · +
rpl23 · MW420960.1 · 150,646–150,927 bp · +
rpl2 · MW420960.1 · 150,946–152,428 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria nummulariifolia
ANNOTATED PLASTOME
MW420960.1
152,523 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38131 76262 114392 152523 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1672 4251 2580 Locate
matK gene − 1963 3498 1536 Locate
rps16 gene − 5155 6325 1171 Locate
trnQ-UUC gene − 7441 7512 72 Locate
psbK gene + 7837 8022 186 Locate
psbI gene + 8407 8517 111 Locate
trnS-GCU gene − 8636 8723 88 Locate
trnG-CGA gene + 9412 10177 766 Locate
trnR-UCU gene + 10367 10438 72 Locate
atpA gene − 10526 12049 1524 Locate
atpF gene − 12132 13353 1222 Locate
atpH gene − 13730 13975 246 Locate
atpI gene − 14972 15715 744 Locate
rps2 gene − 16070 16780 711 Locate
rpoC2 gene − 16997 21202 4206 Locate
rpoC1 gene − 21357 24194 2838 Locate
rpoB gene − 24221 27433 3213 Locate
trnC-GCA gene + 28603 28673 71 Locate
petN gene + 29384 29473 90 Locate
psbM gene − 30526 30639 114 Locate
trnD-GUC gene − 31167 31240 74 Locate
trnY-GUA gene − 31354 31437 84 Locate
trnE-UUC gene − 31497 31569 73 Locate
trnT-GGU gene + 32152 32223 72 Locate
psbD gene + 33529 34590 1062 Locate
psbC gene + 34538 35959 1422 Locate
trnS-UCA gene − 36201 36293 93 Locate
psbZ gene + 36613 36801 189 Locate
trnG-GCC gene + 37073 37143 71 Locate
trnfM-CAU gene − 37296 37369 74 Locate
rps14 gene − 37519 37821 303 Locate
psaB gene − 37944 40148 2205 Locate
psaA gene − 40174 42426 2253 Locate
ycf3 gene − 43100 45023 1924 Locate
trnS-GGA gene + 45908 45994 87 Locate
rps4 gene − 46280 46885 606 Locate
trnT-UGU gene − 47227 47299 73 Locate
trnL-UAA gene + 47969 48538 570 Locate
trnF-GAA gene + 48843 48915 73 Locate
ndhJ gene − 49564 50040 477 Locate
ndhK gene − 50148 50825 678 Locate
ndhC gene − 50878 51240 363 Locate
trnV-UAC gene − 52237 52889 653 Locate
trnM-CAU gene + 53070 53142 73 Locate
atpE gene − 53352 53753 402 Locate
atpB gene − 53750 55237 1488 Locate
rbcL gene + 56009 57451 1443 Locate
accD gene + 58182 59648 1467 Locate
psaI gene + 60366 60476 111 Locate
ycf4 gene + 60910 61464 555 Locate
cemA gene + 62146 62805 660 Locate
petA gene + 63012 63974 963 Locate
pabJ gene − 65004 65126 123 Locate
psbL gene − 65260 65376 117 Locate
psbF gene − 65400 65519 120 Locate
psbE gene − 65534 65785 252 Locate
petL gene + 66694 66789 96 Locate
petG gene + 66966 67079 114 Locate
trnW-CCA gene − 67198 67271 74 Locate
trnP-UGG gene − 67441 67514 74 Locate
psbJ gene + 67787 67921 135 Locate
rpl33 gene + 68386 68586 201 Locate
rps18 gene + 68761 69066 306 Locate
rpl20 gene − 69308 69694 387 Locate
rps12 gene − 70478 70603 126 Locate
clpP gene − 70747 72695 1949 Locate
psbB gene + 73158 74684 1527 Locate
psbT gene + 74876 74977 102 Locate
psbN gene − 75051 75182 132 Locate
psbH gene + 75286 75507 222 Locate
petB gene + 75632 77002 1371 Locate
petD gene + 77191 78386 1196 Locate
rpoA gene − 78549 79562 1014 Locate
rps11 gene − 79634 80050 417 Locate
rpl36 gene − 80152 80265 114 Locate
infA gene − 80361 80594 234 Locate
rps8 gene − 80714 81124 411 Locate
rpl14 gene − 81295 81663 369 Locate
rpl16 gene − 81790 83033 1244 Locate
rps3 gene − 83188 83850 663 Locate
rpl22 gene − 83852 84307 456 Locate
rps19 gene − 84367 84645 279 Locate
rpl2 gene − 84700 86182 1483 Locate
rpl23 gene − 86201 86482 282 Locate
trnI-CAU gene − 86642 86715 74 Locate
ycf2 gene + 86804 93613 6810 Locate
ycf15 gene + 93755 93952 198 Locate
trnL-CAA gene − 94208 94288 81 Locate
ndhB gene − 94831 97042 2212 Locate
rps7 gene − 97317 97784 468 Locate
rps12 gene − 97838 98628 791 Locate
trnV-GAC gene + 100206 100277 72 Locate
rrn16 gene + 100505 101995 1491 Locate
trnI-GAU gene + 102294 103313 1020 Locate
trnA-UGC gene + 103379 104260 882 Locate
rrn23 gene + 104430 107242 2813 Locate
rrn4.5 gene + 107341 107443 103 Locate
rrn5 gene + 107691 107811 121 Locate
trnR-ACG gene + 108046 108119 74 Locate
trnN-GUU gene + 108659 108730 72 Locate
ndhF gene − 109807 112047 2241 Locate
rpl32 gene + 112577 112753 177 Locate
trnL-UAG gene + 113191 113270 80 Locate
ccsA gene + 113366 114340 975 Locate
ndhD gene − 114573 116078 1506 Locate
psaC gene − 116195 116440 246 Locate
ndhE gene − 116697 117002 306 Locate
ndhG gene − 117227 117757 531 Locate
ndhI gene − 118122 118622 501 Locate
ndhA gene − 118703 120795 2093 Locate
ndhH gene − 120797 121978 1182 Locate
rps15 gene − 122081 122353 273 Locate
ycf1 gene − 122624 128068 5445 Locate
trnN-GUU gene + 128398 128469 72 Locate
trnR-ACG gene − 129009 129082 74 Locate
rrn5 gene − 129317 129437 121 Locate
rrn4.5 gene − 129685 129787 103 Locate
rrn23 gene − 129886 132698 2813 Locate
trnA-UGC gene − 132868 133749 882 Locate
trnI-GAU gene − 133815 134834 1020 Locate
rrn16 gene − 135133 136623 1491 Locate
trnV-GAC gene − 136851 136922 72 Locate
rps12 gene + 138500 139290 791 Locate
rps7 gene + 139344 139811 468 Locate
ndhB gene + 140086 142297 2212 Locate
trnL-CAA gene + 142840 142920 81 Locate
ycf15 gene − 143176 143373 198 Locate
ycf2 gene − 143515 150324 6810 Locate
trnI-CAU gene + 150413 150486 74 Locate
rpl23 gene + 150646 150927 282 Locate
rpl2 gene + 150946 152428 1483 Locate
Status Available
Accession MW420960.1
Length 152,523 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources