Scutellaria nuristanica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059232.1 · 4–77 bp · −
psbA · PQ059232.1 · 377–1,429 bp · −
trnK-UUU · PQ059232.1 · 1,670–4,263 bp · −
matK · PQ059232.1 · 1,959–3,503 bp · −
rps16 · PQ059232.1 · 5,157–6,331 bp · −
trnQ-UUG · PQ059232.1 · 7,443–7,514 bp · −
trnS-GCU · PQ059232.1 · 8,633–8,720 bp · −
atpA · PQ059232.1 · 10,501–12,024 bp · −
atpF · PQ059232.1 · 12,107–13,336 bp · −
atpH · PQ059232.1 · 13,707–13,952 bp · −
atpI · PQ059232.1 · 14,952–15,695 bp · −
rps2 · PQ059232.1 · 16,042–16,878 bp · −
rpoC2 · PQ059232.1 · 16,969–21,168 bp · −
rpoC1 · PQ059232.1 · 21,323–24,150 bp · −
rpoB · PQ059232.1 · 24,177–27,389 bp · −
psbM · PQ059232.1 · 30,362–30,475 bp · −
trnD-GUC · PQ059232.1 · 31,006–31,079 bp · −
trnY-GUA · PQ059232.1 · 31,193–31,276 bp · −
trnE-UUC · PQ059232.1 · 31,336–31,408 bp · −
trnS-UGA · PQ059232.1 · 36,031–36,122 bp · −
trnfM-CAU · PQ059232.1 · 37,117–37,190 bp · −
rps14 · PQ059232.1 · 37,340–37,642 bp · −
psaB · PQ059232.1 · 37,770–39,974 bp · −
psaA · PQ059232.1 · 40,000–42,252 bp · −
ycf3 · PQ059232.1 · 42,951–44,878 bp · −
rps4 · PQ059232.1 · 46,145–46,750 bp · −
trnT-UGU · PQ059232.1 · 47,082–47,154 bp · −
ndhJ · PQ059232.1 · 49,439–49,915 bp · −
ndhK · PQ059232.1 · 50,024–50,701 bp · −
ndhC · PQ059232.1 · 50,754–51,116 bp · −
trnV-UAC · PQ059232.1 · 52,096–52,754 bp · −
atpE · PQ059232.1 · 53,216–53,617 bp · −
atpB · PQ059232.1 · 53,614–55,110 bp · −
psbJ · PQ059232.1 · 64,274–64,396 bp · −
psbL · PQ059232.1 · 64,530–64,751 bp · −
psbF · PQ059232.1 · 64,670–64,789 bp · −
psbE · PQ059232.1 · 64,804–65,055 bp · −
trnW-CCA · PQ059232.1 · 66,469–66,542 bp · −
trnP-UGG · PQ059232.1 · 66,713–66,786 bp · −
rpl20 · PQ059232.1 · 68,594–68,980 bp · −
rps12 · PQ059232.1 · 69,775–69,888 bp · −
rps12 · PQ059232.1 · 97,082–97,872 bp · −
clpP · PQ059232.1 · 70,030–71,961 bp · −
psbN · PQ059232.1 · 74,290–74,421 bp · −
rpoA · PQ059232.1 · 77,997–78,815 bp · −
rps11 · PQ059232.1 · 78,887–79,303 bp · −
rpl36 · PQ059232.1 · 79,405–79,518 bp · −
infA · PQ059232.1 · 79,614–79,847 bp · −
rps8 · PQ059232.1 · 79,970–80,380 bp · −
rpl14 · PQ059232.1 · 80,543–80,911 bp · −
rpl16 · PQ059232.1 · 81,038–82,266 bp · −
rps3 · PQ059232.1 · 82,421–83,083 bp · −
rpl22 · PQ059232.1 · 83,085–83,540 bp · −
rps19 · PQ059232.1 · 83,600–83,878 bp · −
rpl2 · PQ059232.1 · 83,933–85,415 bp · −
rpl23 · PQ059232.1 · 85,434–85,715 bp · −
trnI-CAU · PQ059232.1 · 85,875–85,948 bp · −
trnL-CAA · PQ059232.1 · 93,452–93,532 bp · −
ndhB · PQ059232.1 · 94,075–96,286 bp · −
rps7 · PQ059232.1 · 96,561–97,028 bp · −
trnN-GUU · PQ059232.1 · 107,915–107,986 bp · −
ndhF · PQ059232.1 · 109,011–111,302 bp · −
ndhD · PQ059232.1 · 113,822–115,324 bp · −
psaC · PQ059232.1 · 115,464–115,709 bp · −
ndhE · PQ059232.1 · 115,965–116,270 bp · −
ndhG · PQ059232.1 · 116,495–117,025 bp · −
ndhI · PQ059232.1 · 117,374–117,874 bp · −
ndhA · PQ059232.1 · 117,955–120,063 bp · −
ndhH · PQ059232.1 · 120,065–121,276 bp · −
rps15 · PQ059232.1 · 121,343–121,615 bp · −
ycf1 · PQ059232.1 · 121,880–127,540 bp · −
trnR-ACG · PQ059232.1 · 128,386–128,459 bp · −
rrn5 · PQ059232.1 · 128,694–128,814 bp · −
rrn4.5 · PQ059232.1 · 129,062–129,164 bp · −
rrn23 · PQ059232.1 · 129,263–132,075 bp · −
trnA-UGC · PQ059232.1 · 132,245–133,132 bp · −
trnI-GAU · PQ059232.1 · 133,197–134,217 bp · −
ycf68 · PQ059232.1 · 133,769–134,062 bp · −
rrn16 · PQ059232.1 · 134,516–136,006 bp · −
trnV-GAC · PQ059232.1 · 136,229–136,300 bp · −
ycf15 · PQ059232.1 · 142,554–142,802 bp · −
ycf2 · PQ059232.1 · 142,893–149,708 bp · −
psbK · PQ059232.1 · 7,839–8,024 bp · +
psbI · PQ059232.1 · 8,417–8,527 bp · +
trnG-UCC · PQ059232.1 · 9,415–10,167 bp · +
trnR-UCU · PQ059232.1 · 10,333–10,404 bp · +
trnC-GCA · PQ059232.1 · 28,564–28,634 bp · +
petN · PQ059232.1 · 29,364–29,453 bp · +
trnT-GGU · PQ059232.1 · 31,980–32,051 bp · +
psbD · PQ059232.1 · 33,362–34,423 bp · +
psbC · PQ059232.1 · 34,371–35,792 bp · +
psbZ · PQ059232.1 · 36,442–36,630 bp · +
trnG-GCC · PQ059232.1 · 36,902–36,972 bp · +
trnS-GGA · PQ059232.1 · 45,775–45,861 bp · +
trnL-UAA · PQ059232.1 · 47,846–48,411 bp · +
trnF-GAA · PQ059232.1 · 48,717–48,789 bp · +
trnM-CAU · PQ059232.1 · 52,935–53,007 bp · +
rbcL · PQ059232.1 · 55,854–57,317 bp · +
accD · PQ059232.1 · 58,045–59,535 bp · +
psaI · PQ059232.1 · 59,772–59,882 bp · +
ycf4 · PQ059232.1 · 60,316–60,870 bp · +
cemA · PQ059232.1 · 61,494–62,093 bp · +
petA · PQ059232.1 · 62,300–63,262 bp · +
petL · PQ059232.1 · 65,976–66,071 bp · +
petG · PQ059232.1 · 66,247–66,360 bp · +
psaJ · PQ059232.1 · 67,059–67,193 bp · +
rpl33 · PQ059232.1 · 67,672–67,872 bp · +
rps18 · PQ059232.1 · 68,048–68,353 bp · +
rps12 · PQ059232.1 · 137,873–138,663 bp · +
psbB · PQ059232.1 · 72,415–73,941 bp · +
psbT · PQ059232.1 · 74,122–74,229 bp · +
psbH · PQ059232.1 · 74,525–74,746 bp · +
petB · PQ059232.1 · 74,871–76,245 bp · +
petD · PQ059232.1 · 76,434–77,644 bp · +
ycf2 · PQ059232.1 · 86,037–92,852 bp · +
ycf15 · PQ059232.1 · 92,943–93,191 bp · +
trnV-GAC · PQ059232.1 · 99,445–99,516 bp · +
rrn16 · PQ059232.1 · 99,739–101,229 bp · +
trnI-GAU · PQ059232.1 · 101,528–102,548 bp · +
trnA-UGC · PQ059232.1 · 102,613–103,500 bp · +
rrn23 · PQ059232.1 · 103,670–106,482 bp · +
rrn4.5 · PQ059232.1 · 106,581–106,683 bp · +
rrn5 · PQ059232.1 · 106,931–107,051 bp · +
trnR-ACG · PQ059232.1 · 107,286–107,359 bp · +
rpl32 · PQ059232.1 · 111,820–111,996 bp · +
trnL-UAG · PQ059232.1 · 112,432–112,511 bp · +
ccsA · PQ059232.1 · 112,511–113,581 bp · +
trnN-GUU · PQ059232.1 · 127,759–127,830 bp · +
rps7 · PQ059232.1 · 138,717–139,184 bp · +
ndhB · PQ059232.1 · 139,459–141,670 bp · +
trnL-CAA · PQ059232.1 · 142,213–142,293 bp · +
trnI-CAU · PQ059232.1 · 149,797–149,870 bp · +
rpl23 · PQ059232.1 · 150,030–150,311 bp · +
rpl2 · PQ059232.1 · 150,330–151,812 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria nuristanica
ANNOTATED PLASTOME
PQ059232.1
151,907 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37977 75954 113930 151907 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 377 1429 1053 Locate
trnK-UUU gene − 1670 4263 2594 Locate
matK gene − 1959 3503 1545 Locate
rps16 gene − 5157 6331 1175 Locate
trnQ-UUG gene − 7443 7514 72 Locate
psbK gene + 7839 8024 186 Locate
psbI gene + 8417 8527 111 Locate
trnS-GCU gene − 8633 8720 88 Locate
trnG-UCC gene + 9415 10167 753 Locate
trnR-UCU gene + 10333 10404 72 Locate
atpA gene − 10501 12024 1524 Locate
atpF gene − 12107 13336 1230 Locate
atpH gene − 13707 13952 246 Locate
atpI gene − 14952 15695 744 Locate
rps2 gene − 16042 16878 837 Locate
rpoC2 gene − 16969 21168 4200 Locate
rpoC1 gene − 21323 24150 2828 Locate
rpoB gene − 24177 27389 3213 Locate
trnC-GCA gene + 28564 28634 71 Locate
petN gene + 29364 29453 90 Locate
psbM gene − 30362 30475 114 Locate
trnD-GUC gene − 31006 31079 74 Locate
trnY-GUA gene − 31193 31276 84 Locate
trnE-UUC gene − 31336 31408 73 Locate
trnT-GGU gene + 31980 32051 72 Locate
psbD gene + 33362 34423 1062 Locate
psbC gene + 34371 35792 1422 Locate
trnS-UGA gene − 36031 36122 92 Locate
psbZ gene + 36442 36630 189 Locate
trnG-GCC gene + 36902 36972 71 Locate
trnfM-CAU gene − 37117 37190 74 Locate
rps14 gene − 37340 37642 303 Locate
psaB gene − 37770 39974 2205 Locate
psaA gene − 40000 42252 2253 Locate
ycf3 gene − 42951 44878 1928 Locate
trnS-GGA gene + 45775 45861 87 Locate
rps4 gene − 46145 46750 606 Locate
trnT-UGU gene − 47082 47154 73 Locate
trnL-UAA gene + 47846 48411 566 Locate
trnF-GAA gene + 48717 48789 73 Locate
ndhJ gene − 49439 49915 477 Locate
ndhK gene − 50024 50701 678 Locate
ndhC gene − 50754 51116 363 Locate
trnV-UAC gene − 52096 52754 659 Locate
trnM-CAU gene + 52935 53007 73 Locate
atpE gene − 53216 53617 402 Locate
atpB gene − 53614 55110 1497 Locate
rbcL gene + 55854 57317 1464 Locate
accD gene + 58045 59535 1491 Locate
psaI gene + 59772 59882 111 Locate
ycf4 gene + 60316 60870 555 Locate
cemA gene + 61494 62093 600 Locate
petA gene + 62300 63262 963 Locate
psbJ gene − 64274 64396 123 Locate
psbL gene − 64530 64751 222 Locate
psbF gene − 64670 64789 120 Locate
psbE gene − 64804 65055 252 Locate
petL gene + 65976 66071 96 Locate
petG gene + 66247 66360 114 Locate
trnW-CCA gene − 66469 66542 74 Locate
trnP-UGG gene − 66713 66786 74 Locate
psaJ gene + 67059 67193 135 Locate
rpl33 gene + 67672 67872 201 Locate
rps18 gene + 68048 68353 306 Locate
rpl20 gene − 68594 68980 387 Locate
rps12 gene − 69775 69888 114 Locate
clpP gene − 70030 71961 1932 Locate
psbB gene + 72415 73941 1527 Locate
psbT gene + 74122 74229 108 Locate
psbN gene − 74290 74421 132 Locate
psbH gene + 74525 74746 222 Locate
petB gene + 74871 76245 1375 Locate
petD gene + 76434 77644 1211 Locate
rpoA gene − 77997 78815 819 Locate
rps11 gene − 78887 79303 417 Locate
rpl36 gene − 79405 79518 114 Locate
infA gene − 79614 79847 234 Locate
rps8 gene − 79970 80380 411 Locate
rpl14 gene − 80543 80911 369 Locate
rpl16 gene − 81038 82266 1229 Locate
rps3 gene − 82421 83083 663 Locate
rpl22 gene − 83085 83540 456 Locate
rps19 gene − 83600 83878 279 Locate
rpl2 gene − 83933 85415 1483 Locate
rpl23 gene − 85434 85715 282 Locate
trnI-CAU gene − 85875 85948 74 Locate
ycf2 gene + 86037 92852 6816 Locate
ycf15 gene + 92943 93191 249 Locate
trnL-CAA gene − 93452 93532 81 Locate
ndhB gene − 94075 96286 2212 Locate
rps7 gene − 96561 97028 468 Locate
rps12 gene − 97082 97872 791 Locate
trnV-GAC gene + 99445 99516 72 Locate
rrn16 gene + 99739 101229 1491 Locate
trnI-GAU gene + 101528 102548 1021 Locate
trnA-UGC gene + 102613 103500 888 Locate
rrn23 gene + 103670 106482 2813 Locate
rrn4.5 gene + 106581 106683 103 Locate
rrn5 gene + 106931 107051 121 Locate
trnR-ACG gene + 107286 107359 74 Locate
trnN-GUU gene − 107915 107986 72 Locate
ndhF gene − 109011 111302 2292 Locate
rpl32 gene + 111820 111996 177 Locate
trnL-UAG gene + 112432 112511 80 Locate
ccsA gene + 112511 113581 1071 Locate
ndhD gene − 113822 115324 1503 Locate
psaC gene − 115464 115709 246 Locate
ndhE gene − 115965 116270 306 Locate
ndhG gene − 116495 117025 531 Locate
ndhI gene − 117374 117874 501 Locate
ndhA gene − 117955 120063 2109 Locate
ndhH gene − 120065 121276 1212 Locate
rps15 gene − 121343 121615 273 Locate
ycf1 gene − 121880 127540 5661 Locate
trnN-GUU gene + 127759 127830 72 Locate
trnR-ACG gene − 128386 128459 74 Locate
rrn5 gene − 128694 128814 121 Locate
rrn4.5 gene − 129062 129164 103 Locate
rrn23 gene − 129263 132075 2813 Locate
trnA-UGC gene − 132245 133132 888 Locate
trnI-GAU gene − 133197 134217 1021 Locate
ycf68 gene − 133769 134062 294 Locate
rrn16 gene − 134516 136006 1491 Locate
trnV-GAC gene − 136229 136300 72 Locate
rps12 gene + 137873 138663 791 Locate
rps7 gene + 138717 139184 468 Locate
ndhB gene + 139459 141670 2212 Locate
trnL-CAA gene + 142213 142293 81 Locate
ycf15 gene − 142554 142802 249 Locate
ycf2 gene − 142893 149708 6816 Locate
trnI-CAU gene + 149797 149870 74 Locate
rpl23 gene + 150030 150311 282 Locate
rpl2 gene + 150330 151812 1483 Locate
Status Available
Accession PQ059232.1
Length 151,907 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources