Scutellaria oligodonta chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059335.1 · 4–77 bp · −
psbA · PQ059335.1 · 364–1,422 bp · −
trnK-UUU · PQ059335.1 · 1,664–4,245 bp · −
matK · PQ059335.1 · 1,954–3,480 bp · −
rps16 · PQ059335.1 · 5,146–6,306 bp · −
trnQ-UUG · PQ059335.1 · 7,053–7,124 bp · −
trnS-GCU · PQ059335.1 · 8,254–8,341 bp · −
atpA · PQ059335.1 · 10,140–11,663 bp · −
atpF · PQ059335.1 · 11,745–12,974 bp · −
atpH · PQ059335.1 · 13,337–13,582 bp · −
atpI · PQ059335.1 · 14,571–15,314 bp · −
rps2 · PQ059335.1 · 15,660–16,370 bp · −
rpoC2 · PQ059335.1 · 16,585–20,790 bp · −
rpoC1 · PQ059335.1 · 20,945–23,774 bp · −
rpoB · PQ059335.1 · 23,801–27,013 bp · −
psbM · PQ059335.1 · 30,133–30,237 bp · −
trnD-GUC · PQ059335.1 · 30,774–30,847 bp · −
trnY-GUA · PQ059335.1 · 30,961–31,044 bp · −
trnE-UUC · PQ059335.1 · 31,104–31,176 bp · −
trnS-UGA · PQ059335.1 · 35,789–35,880 bp · −
trnfM-CAU · PQ059335.1 · 36,880–36,953 bp · −
rps14 · PQ059335.1 · 37,108–37,410 bp · −
psaB · PQ059335.1 · 37,539–39,743 bp · −
psaA · PQ059335.1 · 39,769–42,021 bp · −
ycf3 · PQ059335.1 · 42,714–44,637 bp · −
rps4 · PQ059335.1 · 45,882–46,487 bp · −
trnT-UGU · PQ059335.1 · 46,828–46,900 bp · −
ndhJ · PQ059335.1 · 49,154–49,630 bp · −
ndhK · PQ059335.1 · 49,739–50,416 bp · −
ndhC · PQ059335.1 · 50,470–50,832 bp · −
trnV-UAC · PQ059335.1 · 51,818–52,470 bp · −
atpE · PQ059335.1 · 52,925–53,326 bp · −
atpB · PQ059335.1 · 53,323–54,819 bp · −
psbJ · PQ059335.1 · 64,546–64,668 bp · −
psbL · PQ059335.1 · 64,802–64,918 bp · −
psbF · PQ059335.1 · 64,942–65,061 bp · −
psbE · PQ059335.1 · 65,076–65,327 bp · −
trnW-CCA · PQ059335.1 · 66,708–66,781 bp · −
trnP-UGG · PQ059335.1 · 66,951–67,024 bp · −
rpl20 · PQ059335.1 · 68,823–69,209 bp · −
rps12 · PQ059335.1 · 69,993–70,118 bp · −
rps12 · PQ059335.1 · 97,271–98,061 bp · −
clpP · PQ059335.1 · 70,260–72,187 bp · −
psbN · PQ059335.1 · 74,525–74,656 bp · −
rpoA · PQ059335.1 · 78,226–79,026 bp · −
rps11 · PQ059335.1 · 79,098–79,514 bp · −
rpl36 · PQ059335.1 · 79,616–79,729 bp · −
infA · PQ059335.1 · 79,824–80,057 bp · −
rps8 · PQ059335.1 · 80,181–80,591 bp · −
rpl14 · PQ059335.1 · 80,743–81,111 bp · −
rpl16 · PQ059335.1 · 81,238–82,471 bp · −
rps3 · PQ059335.1 · 82,627–83,289 bp · −
rpl22 · PQ059335.1 · 83,291–83,746 bp · −
rps19 · PQ059335.1 · 83,806–84,084 bp · −
rpl2 · PQ059335.1 · 84,139–85,620 bp · −
rpl23 · PQ059335.1 · 85,639–85,920 bp · −
trnI-CAU · PQ059335.1 · 86,080–86,153 bp · −
trnL-CAA · PQ059335.1 · 93,641–93,721 bp · −
ndhB · PQ059335.1 · 94,264–96,475 bp · −
rps7 · PQ059335.1 · 96,750–97,217 bp · −
trnN-GUU · PQ059335.1 · 108,100–108,171 bp · −
ndhF · PQ059335.1 · 109,228–111,489 bp · −
ndhD · PQ059335.1 · 113,839–115,368 bp · −
psaC · PQ059335.1 · 115,469–115,714 bp · −
ndhE · PQ059335.1 · 115,970–116,275 bp · −
ndhG · PQ059335.1 · 116,492–117,022 bp · −
ndhI · PQ059335.1 · 117,389–117,889 bp · −
ndhA · PQ059335.1 · 117,975–120,096 bp · −
ndhH · PQ059335.1 · 120,098–121,309 bp · −
rps15 · PQ059335.1 · 121,376–121,648 bp · −
ycf1 · PQ059335.1 · 121,846–127,461 bp · −
trnR-ACG · PQ059335.1 · 128,300–128,373 bp · −
rrn5 · PQ059335.1 · 128,608–128,728 bp · −
rrn4.5 · PQ059335.1 · 128,976–129,078 bp · −
rrn23 · PQ059335.1 · 129,177–131,988 bp · −
trnA-UGC · PQ059335.1 · 132,158–133,045 bp · −
trnI-GAU · PQ059335.1 · 133,110–134,131 bp · −
ycf68 · PQ059335.1 · 133,683–133,976 bp · −
rrn16 · PQ059335.1 · 134,430–135,920 bp · −
trnV-GAC · PQ059335.1 · 136,147–136,218 bp · −
ycf15 · PQ059335.1 · 142,470–142,718 bp · −
ycf2 · PQ059335.1 · 142,809–149,609 bp · −
psbK · PQ059335.1 · 7,449–7,634 bp · +
psbI · PQ059335.1 · 8,025–8,135 bp · +
trnG-UCC · PQ059335.1 · 9,045–9,797 bp · +
trnR-UCU · PQ059335.1 · 9,972–10,043 bp · +
trnC-GCA · PQ059335.1 · 28,165–28,235 bp · +
petN · PQ059335.1 · 28,949–29,038 bp · +
trnT-GGU · PQ059335.1 · 31,745–31,816 bp · +
psbD · PQ059335.1 · 33,122–34,183 bp · +
psbC · PQ059335.1 · 34,131–35,552 bp · +
psbZ · PQ059335.1 · 36,196–36,384 bp · +
trnG-GCC · PQ059335.1 · 36,662–36,732 bp · +
trnS-GGA · PQ059335.1 · 45,520–45,606 bp · +
trnL-UAA · PQ059335.1 · 47,581–48,140 bp · +
trnF-GAA · PQ059335.1 · 48,443–48,515 bp · +
trnM-CAU · PQ059335.1 · 52,659–52,731 bp · +
rbcL · PQ059335.1 · 55,570–57,033 bp · +
accD · PQ059335.1 · 57,747–59,225 bp · +
psaI · PQ059335.1 · 59,932–60,042 bp · +
ycf4 · PQ059335.1 · 60,468–61,022 bp · +
cemA · PQ059335.1 · 61,771–62,370 bp · +
petA · PQ059335.1 · 62,577–63,539 bp · +
petL · PQ059335.1 · 66,205–66,300 bp · +
petG · PQ059335.1 · 66,476–66,589 bp · +
psaJ · PQ059335.1 · 67,233–67,430 bp · +
rpl33 · PQ059335.1 · 67,908–68,108 bp · +
rps18 · PQ059335.1 · 68,283–68,588 bp · +
rps12 · PQ059335.1 · 137,790–138,580 bp · +
psbB · PQ059335.1 · 72,639–74,165 bp · +
psbT · PQ059335.1 · 74,357–74,464 bp · +
psbH · PQ059335.1 · 74,760–74,981 bp · +
petB · PQ059335.1 · 75,106–76,475 bp · +
petD · PQ059335.1 · 76,658–77,871 bp · +
ycf2 · PQ059335.1 · 86,242–93,042 bp · +
ycf15 · PQ059335.1 · 93,133–93,381 bp · +
trnV-GAC · PQ059335.1 · 99,633–99,704 bp · +
rrn16 · PQ059335.1 · 99,931–101,421 bp · +
trnI-GAU · PQ059335.1 · 101,720–102,741 bp · +
trnA-UGC · PQ059335.1 · 102,806–103,693 bp · +
rrn23 · PQ059335.1 · 103,863–106,674 bp · +
rrn4.5 · PQ059335.1 · 106,773–106,875 bp · +
rrn5 · PQ059335.1 · 107,123–107,243 bp · +
trnR-ACG · PQ059335.1 · 107,478–107,551 bp · +
rpl32 · PQ059335.1 · 111,817–111,993 bp · +
trnL-UAG · PQ059335.1 · 112,440–112,519 bp · +
ccsA · PQ059335.1 · 112,608–113,582 bp · +
trnN-GUU · PQ059335.1 · 127,680–127,751 bp · +
rps7 · PQ059335.1 · 138,634–139,101 bp · +
ndhB · PQ059335.1 · 139,376–141,587 bp · +
trnL-CAA · PQ059335.1 · 142,130–142,210 bp · +
trnI-CAU · PQ059335.1 · 149,698–149,771 bp · +
rpl23 · PQ059335.1 · 149,931–150,212 bp · +
rpl2 · PQ059335.1 · 150,231–151,712 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria oligodonta
ANNOTATED PLASTOME
PQ059335.1
151,812 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37953 75906 113859 151812 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 364 1422 1059 Locate
trnK-UUU gene − 1664 4245 2582 Locate
matK gene − 1954 3480 1527 Locate
rps16 gene − 5146 6306 1161 Locate
trnQ-UUG gene − 7053 7124 72 Locate
psbK gene + 7449 7634 186 Locate
psbI gene + 8025 8135 111 Locate
trnS-GCU gene − 8254 8341 88 Locate
trnG-UCC gene + 9045 9797 753 Locate
trnR-UCU gene + 9972 10043 72 Locate
atpA gene − 10140 11663 1524 Locate
atpF gene − 11745 12974 1230 Locate
atpH gene − 13337 13582 246 Locate
atpI gene − 14571 15314 744 Locate
rps2 gene − 15660 16370 711 Locate
rpoC2 gene − 16585 20790 4206 Locate
rpoC1 gene − 20945 23774 2830 Locate
rpoB gene − 23801 27013 3213 Locate
trnC-GCA gene + 28165 28235 71 Locate
petN gene + 28949 29038 90 Locate
psbM gene − 30133 30237 105 Locate
trnD-GUC gene − 30774 30847 74 Locate
trnY-GUA gene − 30961 31044 84 Locate
trnE-UUC gene − 31104 31176 73 Locate
trnT-GGU gene + 31745 31816 72 Locate
psbD gene + 33122 34183 1062 Locate
psbC gene + 34131 35552 1422 Locate
trnS-UGA gene − 35789 35880 92 Locate
psbZ gene + 36196 36384 189 Locate
trnG-GCC gene + 36662 36732 71 Locate
trnfM-CAU gene − 36880 36953 74 Locate
rps14 gene − 37108 37410 303 Locate
psaB gene − 37539 39743 2205 Locate
psaA gene − 39769 42021 2253 Locate
ycf3 gene − 42714 44637 1924 Locate
trnS-GGA gene + 45520 45606 87 Locate
rps4 gene − 45882 46487 606 Locate
trnT-UGU gene − 46828 46900 73 Locate
trnL-UAA gene + 47581 48140 560 Locate
trnF-GAA gene + 48443 48515 73 Locate
ndhJ gene − 49154 49630 477 Locate
ndhK gene − 49739 50416 678 Locate
ndhC gene − 50470 50832 363 Locate
trnV-UAC gene − 51818 52470 653 Locate
trnM-CAU gene + 52659 52731 73 Locate
atpE gene − 52925 53326 402 Locate
atpB gene − 53323 54819 1497 Locate
rbcL gene + 55570 57033 1464 Locate
accD gene + 57747 59225 1479 Locate
psaI gene + 59932 60042 111 Locate
ycf4 gene + 60468 61022 555 Locate
cemA gene + 61771 62370 600 Locate
petA gene + 62577 63539 963 Locate
psbJ gene − 64546 64668 123 Locate
psbL gene − 64802 64918 117 Locate
psbF gene − 64942 65061 120 Locate
psbE gene − 65076 65327 252 Locate
petL gene + 66205 66300 96 Locate
petG gene + 66476 66589 114 Locate
trnW-CCA gene − 66708 66781 74 Locate
trnP-UGG gene − 66951 67024 74 Locate
psaJ gene + 67233 67430 198 Locate
rpl33 gene + 67908 68108 201 Locate
rps18 gene + 68283 68588 306 Locate
rpl20 gene − 68823 69209 387 Locate
rps12 gene − 69993 70118 126 Locate
clpP gene − 70260 72187 1928 Locate
psbB gene + 72639 74165 1527 Locate
psbT gene + 74357 74464 108 Locate
psbN gene − 74525 74656 132 Locate
psbH gene + 74760 74981 222 Locate
petB gene + 75106 76475 1370 Locate
petD gene + 76658 77871 1214 Locate
rpoA gene − 78226 79026 801 Locate
rps11 gene − 79098 79514 417 Locate
rpl36 gene − 79616 79729 114 Locate
infA gene − 79824 80057 234 Locate
rps8 gene − 80181 80591 411 Locate
rpl14 gene − 80743 81111 369 Locate
rpl16 gene − 81238 82471 1234 Locate
rps3 gene − 82627 83289 663 Locate
rpl22 gene − 83291 83746 456 Locate
rps19 gene − 83806 84084 279 Locate
rpl2 gene − 84139 85620 1482 Locate
rpl23 gene − 85639 85920 282 Locate
trnI-CAU gene − 86080 86153 74 Locate
ycf2 gene + 86242 93042 6801 Locate
ycf15 gene + 93133 93381 249 Locate
trnL-CAA gene − 93641 93721 81 Locate
ndhB gene − 94264 96475 2212 Locate
rps7 gene − 96750 97217 468 Locate
rps12 gene − 97271 98061 791 Locate
trnV-GAC gene + 99633 99704 72 Locate
rrn16 gene + 99931 101421 1491 Locate
trnI-GAU gene + 101720 102741 1022 Locate
trnA-UGC gene + 102806 103693 888 Locate
rrn23 gene + 103863 106674 2812 Locate
rrn4.5 gene + 106773 106875 103 Locate
rrn5 gene + 107123 107243 121 Locate
trnR-ACG gene + 107478 107551 74 Locate
trnN-GUU gene − 108100 108171 72 Locate
ndhF gene − 109228 111489 2262 Locate
rpl32 gene + 111817 111993 177 Locate
trnL-UAG gene + 112440 112519 80 Locate
ccsA gene + 112608 113582 975 Locate
ndhD gene − 113839 115368 1530 Locate
psaC gene − 115469 115714 246 Locate
ndhE gene − 115970 116275 306 Locate
ndhG gene − 116492 117022 531 Locate
ndhI gene − 117389 117889 501 Locate
ndhA gene − 117975 120096 2122 Locate
ndhH gene − 120098 121309 1212 Locate
rps15 gene − 121376 121648 273 Locate
ycf1 gene − 121846 127461 5616 Locate
trnN-GUU gene + 127680 127751 72 Locate
trnR-ACG gene − 128300 128373 74 Locate
rrn5 gene − 128608 128728 121 Locate
rrn4.5 gene − 128976 129078 103 Locate
rrn23 gene − 129177 131988 2812 Locate
trnA-UGC gene − 132158 133045 888 Locate
trnI-GAU gene − 133110 134131 1022 Locate
ycf68 gene − 133683 133976 294 Locate
rrn16 gene − 134430 135920 1491 Locate
trnV-GAC gene − 136147 136218 72 Locate
rps12 gene + 137790 138580 791 Locate
rps7 gene + 138634 139101 468 Locate
ndhB gene + 139376 141587 2212 Locate
trnL-CAA gene + 142130 142210 81 Locate
ycf15 gene − 142470 142718 249 Locate
ycf2 gene − 142809 149609 6801 Locate
trnI-CAU gene + 149698 149771 74 Locate
rpl23 gene + 149931 150212 282 Locate
rpl2 gene + 150231 151712 1482 Locate
Status Available
Accession PQ059335.1
Length 151,812 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources