Scutellaria omeiensis var. serratifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059324.1 · 3–76 bp · −
psbA · PQ059324.1 · 369–1,427 bp · −
trnK-UUU · PQ059324.1 · 1,669–4,257 bp · −
matK · PQ059324.1 · 1,964–3,499 bp · −
rps16 · PQ059324.1 · 5,130–6,298 bp · −
trnQ-UUG · PQ059324.1 · 7,318–7,389 bp · −
trnS-GCU · PQ059324.1 · 8,520–8,607 bp · −
atpA · PQ059324.1 · 10,393–11,916 bp · −
atpF · PQ059324.1 · 11,998–13,225 bp · −
atpH · PQ059324.1 · 13,591–13,836 bp · −
atpI · PQ059324.1 · 14,824–15,567 bp · −
rps2 · PQ059324.1 · 15,916–16,626 bp · −
rpoC2 · PQ059324.1 · 16,843–21,048 bp · −
rpoC1 · PQ059324.1 · 21,203–24,024 bp · −
rpoB · PQ059324.1 · 24,051–27,263 bp · −
psbM · PQ059324.1 · 30,296–30,400 bp · −
trnD-GUC · PQ059324.1 · 30,927–31,000 bp · −
trnY-GUA · PQ059324.1 · 31,114–31,197 bp · −
trnE-UUC · PQ059324.1 · 31,257–31,329 bp · −
trnS-UGA · PQ059324.1 · 35,948–36,039 bp · −
trnfM-CAU · PQ059324.1 · 37,034–37,107 bp · −
rps14 · PQ059324.1 · 37,257–37,559 bp · −
psaB · PQ059324.1 · 37,687–39,891 bp · −
psaA · PQ059324.1 · 39,917–42,169 bp · −
ycf3 · PQ059324.1 · 42,839–44,761 bp · −
rps4 · PQ059324.1 · 46,018–46,623 bp · −
trnT-UGU · PQ059324.1 · 46,965–47,037 bp · −
ndhJ · PQ059324.1 · 49,299–49,775 bp · −
ndhK · PQ059324.1 · 49,883–50,560 bp · −
ndhC · PQ059324.1 · 50,613–50,975 bp · −
trnV-UAC · PQ059324.1 · 51,833–52,485 bp · −
atpE · PQ059324.1 · 52,954–53,355 bp · −
atpB · PQ059324.1 · 53,352–54,839 bp · −
psbJ · PQ059324.1 · 64,450–64,572 bp · −
psbL · PQ059324.1 · 64,706–64,927 bp · −
psbF · PQ059324.1 · 64,846–64,965 bp · −
psbE · PQ059324.1 · 64,980–65,231 bp · −
trnW-CCA · PQ059324.1 · 66,643–66,716 bp · −
trnP-UGG · PQ059324.1 · 66,886–66,959 bp · −
rpl20 · PQ059324.1 · 68,757–69,143 bp · −
rps12 · PQ059324.1 · 69,932–70,057 bp · −
rps12 · PQ059324.1 · 97,267–98,057 bp · −
clpP · PQ059324.1 · 70,200–72,133 bp · −
psbN · PQ059324.1 · 74,494–74,625 bp · −
rpoA · PQ059324.1 · 77,996–79,009 bp · −
rps11 · PQ059324.1 · 79,081–79,497 bp · −
rpl36 · PQ059324.1 · 79,599–79,712 bp · −
infA · PQ059324.1 · 79,808–80,041 bp · −
rps8 · PQ059324.1 · 80,161–80,571 bp · −
rpl14 · PQ059324.1 · 80,741–81,109 bp · −
rpl16 · PQ059324.1 · 81,236–82,462 bp · −
rps3 · PQ059324.1 · 82,617–83,279 bp · −
rpl22 · PQ059324.1 · 83,281–83,736 bp · −
rps19 · PQ059324.1 · 83,796–84,074 bp · −
rpl2 · PQ059324.1 · 84,129–85,611 bp · −
rpl23 · PQ059324.1 · 85,630–85,911 bp · −
trnI-CAU · PQ059324.1 · 86,071–86,144 bp · −
trnL-CAA · PQ059324.1 · 93,637–93,717 bp · −
ndhB · PQ059324.1 · 94,260–96,471 bp · −
rps7 · PQ059324.1 · 96,746–97,213 bp · −
trnN-GUU · PQ059324.1 · 108,095–108,166 bp · −
ndhF · PQ059324.1 · 109,243–111,483 bp · −
ndhD · PQ059324.1 · 114,007–115,530 bp · −
psaC · PQ059324.1 · 115,629–115,874 bp · −
ndhE · PQ059324.1 · 116,131–116,436 bp · −
ndhG · PQ059324.1 · 116,667–117,197 bp · −
ndhI · PQ059324.1 · 117,562–118,062 bp · −
ndhA · PQ059324.1 · 118,143–120,234 bp · −
ndhH · PQ059324.1 · 120,236–121,447 bp · −
rps15 · PQ059324.1 · 121,520–121,792 bp · −
ycf1 · PQ059324.1 · 122,059–127,704 bp · −
trnR-ACG · PQ059324.1 · 128,541–128,614 bp · −
rrn5 · PQ059324.1 · 128,849–128,969 bp · −
rrn4.5 · PQ059324.1 · 129,217–129,319 bp · −
rrn23 · PQ059324.1 · 129,418–132,230 bp · −
trnA-UGC · PQ059324.1 · 132,400–133,281 bp · −
trnI-GAU · PQ059324.1 · 133,346–134,366 bp · −
ycf68 · PQ059324.1 · 133,972–134,211 bp · −
rrn16 · PQ059324.1 · 134,665–136,155 bp · −
trnV-GAC · PQ059324.1 · 136,383–136,454 bp · −
ycf15 · PQ059324.1 · 142,708–142,956 bp · −
ycf2 · PQ059324.1 · 143,047–149,856 bp · −
psbK · PQ059324.1 · 7,714–7,899 bp · +
psbI · PQ059324.1 · 8,292–8,402 bp · +
trnG-UCC · PQ059324.1 · 9,294–10,054 bp · +
trnR-UCU · PQ059324.1 · 10,225–10,296 bp · +
trnC-GCA · PQ059324.1 · 28,432–28,502 bp · +
petN · PQ059324.1 · 29,214–29,303 bp · +
trnT-GGU · PQ059324.1 · 31,905–31,976 bp · +
psbD · PQ059324.1 · 33,282–34,343 bp · +
psbC · PQ059324.1 · 34,291–35,712 bp · +
psbZ · PQ059324.1 · 36,359–36,547 bp · +
trnG-GCC · PQ059324.1 · 36,819–36,889 bp · +
trnS-GGA · PQ059324.1 · 45,646–45,732 bp · +
trnL-UAA · PQ059324.1 · 47,711–48,271 bp · +
trnF-GAA · PQ059324.1 · 48,578–48,650 bp · +
trnM-CAU · PQ059324.1 · 52,666–52,738 bp · +
rbcL · PQ059324.1 · 55,591–57,051 bp · +
accD · PQ059324.1 · 57,788–59,254 bp · +
psaI · PQ059324.1 · 59,812–59,922 bp · +
ycf4 · PQ059324.1 · 60,356–60,910 bp · +
cemA · PQ059324.1 · 61,648–62,247 bp · +
petA · PQ059324.1 · 62,454–63,416 bp · +
petL · PQ059324.1 · 66,140–66,235 bp · +
petG · PQ059324.1 · 66,411–66,524 bp · +
psaJ · PQ059324.1 · 67,232–67,366 bp · +
rpl33 · PQ059324.1 · 67,840–68,040 bp · +
rps18 · PQ059324.1 · 68,215–68,520 bp · +
rps12 · PQ059324.1 · 138,032–138,822 bp · +
psbB · PQ059324.1 · 72,600–74,126 bp · +
psbT · PQ059324.1 · 74,318–74,419 bp · +
psbH · PQ059324.1 · 74,729–74,950 bp · +
petB · PQ059324.1 · 75,075–76,443 bp · +
petD · PQ059324.1 · 76,632–77,833 bp · +
ycf2 · PQ059324.1 · 86,233–93,042 bp · +
ycf15 · PQ059324.1 · 93,133–93,381 bp · +
trnV-GAC · PQ059324.1 · 99,635–99,706 bp · +
rrn16 · PQ059324.1 · 99,934–101,424 bp · +
trnI-GAU · PQ059324.1 · 101,723–102,743 bp · +
trnA-UGC · PQ059324.1 · 102,808–103,689 bp · +
rrn23 · PQ059324.1 · 103,859–106,671 bp · +
rrn4.5 · PQ059324.1 · 106,770–106,872 bp · +
rrn5 · PQ059324.1 · 107,120–107,240 bp · +
trnR-ACG · PQ059324.1 · 107,475–107,548 bp · +
rpl32 · PQ059324.1 · 112,004–112,180 bp · +
trnL-UAG · PQ059324.1 · 112,624–112,703 bp · +
ccsA · PQ059324.1 · 112,800–113,774 bp · +
trnN-GUU · PQ059324.1 · 127,923–127,994 bp · +
rps7 · PQ059324.1 · 138,876–139,343 bp · +
ndhB · PQ059324.1 · 139,618–141,829 bp · +
trnL-CAA · PQ059324.1 · 142,372–142,452 bp · +
trnI-CAU · PQ059324.1 · 149,945–150,018 bp · +
rpl23 · PQ059324.1 · 150,178–150,459 bp · +
rpl2 · PQ059324.1 · 150,478–151,960 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria omeiensis var. serratifolia
ANNOTATED PLASTOME
PQ059324.1
152,055 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38014 76028 114041 152055 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1669 4257 2589 Locate
matK gene − 1964 3499 1536 Locate
rps16 gene − 5130 6298 1169 Locate
trnQ-UUG gene − 7318 7389 72 Locate
psbK gene + 7714 7899 186 Locate
psbI gene + 8292 8402 111 Locate
trnS-GCU gene − 8520 8607 88 Locate
trnG-UCC gene + 9294 10054 761 Locate
trnR-UCU gene + 10225 10296 72 Locate
atpA gene − 10393 11916 1524 Locate
atpF gene − 11998 13225 1228 Locate
atpH gene − 13591 13836 246 Locate
atpI gene − 14824 15567 744 Locate
rps2 gene − 15916 16626 711 Locate
rpoC2 gene − 16843 21048 4206 Locate
rpoC1 gene − 21203 24024 2822 Locate
rpoB gene − 24051 27263 3213 Locate
trnC-GCA gene + 28432 28502 71 Locate
petN gene + 29214 29303 90 Locate
psbM gene − 30296 30400 105 Locate
trnD-GUC gene − 30927 31000 74 Locate
trnY-GUA gene − 31114 31197 84 Locate
trnE-UUC gene − 31257 31329 73 Locate
trnT-GGU gene + 31905 31976 72 Locate
psbD gene + 33282 34343 1062 Locate
psbC gene + 34291 35712 1422 Locate
trnS-UGA gene − 35948 36039 92 Locate
psbZ gene + 36359 36547 189 Locate
trnG-GCC gene + 36819 36889 71 Locate
trnfM-CAU gene − 37034 37107 74 Locate
rps14 gene − 37257 37559 303 Locate
psaB gene − 37687 39891 2205 Locate
psaA gene − 39917 42169 2253 Locate
ycf3 gene − 42839 44761 1923 Locate
trnS-GGA gene + 45646 45732 87 Locate
rps4 gene − 46018 46623 606 Locate
trnT-UGU gene − 46965 47037 73 Locate
trnL-UAA gene + 47711 48271 561 Locate
trnF-GAA gene + 48578 48650 73 Locate
ndhJ gene − 49299 49775 477 Locate
ndhK gene − 49883 50560 678 Locate
ndhC gene − 50613 50975 363 Locate
trnV-UAC gene − 51833 52485 653 Locate
trnM-CAU gene + 52666 52738 73 Locate
atpE gene − 52954 53355 402 Locate
atpB gene − 53352 54839 1488 Locate
rbcL gene + 55591 57051 1461 Locate
accD gene + 57788 59254 1467 Locate
psaI gene + 59812 59922 111 Locate
ycf4 gene + 60356 60910 555 Locate
cemA gene + 61648 62247 600 Locate
petA gene + 62454 63416 963 Locate
psbJ gene − 64450 64572 123 Locate
psbL gene − 64706 64927 222 Locate
psbF gene − 64846 64965 120 Locate
psbE gene − 64980 65231 252 Locate
petL gene + 66140 66235 96 Locate
petG gene + 66411 66524 114 Locate
trnW-CCA gene − 66643 66716 74 Locate
trnP-UGG gene − 66886 66959 74 Locate
psaJ gene + 67232 67366 135 Locate
rpl33 gene + 67840 68040 201 Locate
rps18 gene + 68215 68520 306 Locate
rpl20 gene − 68757 69143 387 Locate
rps12 gene − 69932 70057 126 Locate
clpP gene − 70200 72133 1934 Locate
psbB gene + 72600 74126 1527 Locate
psbT gene + 74318 74419 102 Locate
psbN gene − 74494 74625 132 Locate
psbH gene + 74729 74950 222 Locate
petB gene + 75075 76443 1369 Locate
petD gene + 76632 77833 1202 Locate
rpoA gene − 77996 79009 1014 Locate
rps11 gene − 79081 79497 417 Locate
rpl36 gene − 79599 79712 114 Locate
infA gene − 79808 80041 234 Locate
rps8 gene − 80161 80571 411 Locate
rpl14 gene − 80741 81109 369 Locate
rpl16 gene − 81236 82462 1227 Locate
rps3 gene − 82617 83279 663 Locate
rpl22 gene − 83281 83736 456 Locate
rps19 gene − 83796 84074 279 Locate
rpl2 gene − 84129 85611 1483 Locate
rpl23 gene − 85630 85911 282 Locate
trnI-CAU gene − 86071 86144 74 Locate
ycf2 gene + 86233 93042 6810 Locate
ycf15 gene + 93133 93381 249 Locate
trnL-CAA gene − 93637 93717 81 Locate
ndhB gene − 94260 96471 2212 Locate
rps7 gene − 96746 97213 468 Locate
rps12 gene − 97267 98057 791 Locate
trnV-GAC gene + 99635 99706 72 Locate
rrn16 gene + 99934 101424 1491 Locate
trnI-GAU gene + 101723 102743 1021 Locate
trnA-UGC gene + 102808 103689 882 Locate
rrn23 gene + 103859 106671 2813 Locate
rrn4.5 gene + 106770 106872 103 Locate
rrn5 gene + 107120 107240 121 Locate
trnR-ACG gene + 107475 107548 74 Locate
trnN-GUU gene − 108095 108166 72 Locate
ndhF gene − 109243 111483 2241 Locate
rpl32 gene + 112004 112180 177 Locate
trnL-UAG gene + 112624 112703 80 Locate
ccsA gene + 112800 113774 975 Locate
ndhD gene − 114007 115530 1524 Locate
psaC gene − 115629 115874 246 Locate
ndhE gene − 116131 116436 306 Locate
ndhG gene − 116667 117197 531 Locate
ndhI gene − 117562 118062 501 Locate
ndhA gene − 118143 120234 2092 Locate
ndhH gene − 120236 121447 1212 Locate
rps15 gene − 121520 121792 273 Locate
ycf1 gene − 122059 127704 5646 Locate
trnN-GUU gene + 127923 127994 72 Locate
trnR-ACG gene − 128541 128614 74 Locate
rrn5 gene − 128849 128969 121 Locate
rrn4.5 gene − 129217 129319 103 Locate
rrn23 gene − 129418 132230 2813 Locate
trnA-UGC gene − 132400 133281 882 Locate
trnI-GAU gene − 133346 134366 1021 Locate
ycf68 gene − 133972 134211 240 Locate
rrn16 gene − 134665 136155 1491 Locate
trnV-GAC gene − 136383 136454 72 Locate
rps12 gene + 138032 138822 791 Locate
rps7 gene + 138876 139343 468 Locate
ndhB gene + 139618 141829 2212 Locate
trnL-CAA gene + 142372 142452 81 Locate
ycf15 gene − 142708 142956 249 Locate
ycf2 gene − 143047 149856 6810 Locate
trnI-CAU gene + 149945 150018 74 Locate
rpl23 gene + 150178 150459 282 Locate
rpl2 gene + 150478 151960 1483 Locate
Status Available
Accession PQ059324.1
Length 152,055 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources