Scutellaria orientalis subsp. bornmuelleri chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059223.1 · 4–77 bp · −
psbA · PQ059223.1 · 374–1,432 bp · −
trnK-UUU · PQ059223.1 · 1,674–4,255 bp · −
matK · PQ059223.1 · 1,964–3,490 bp · −
rps16 · PQ059223.1 · 5,157–6,317 bp · −
trnQ-UUG · PQ059223.1 · 7,053–7,124 bp · −
trnS-GCU · PQ059223.1 · 8,252–8,339 bp · −
atpA · PQ059223.1 · 10,141–11,664 bp · −
atpF · PQ059223.1 · 11,746–12,975 bp · −
atpH · PQ059223.1 · 13,331–13,576 bp · −
atpI · PQ059223.1 · 14,564–15,307 bp · −
rps2 · PQ059223.1 · 15,653–16,363 bp · −
rpoC2 · PQ059223.1 · 16,579–20,784 bp · −
rpoC1 · PQ059223.1 · 20,939–23,775 bp · −
rpoB · PQ059223.1 · 23,802–27,014 bp · −
psbM · PQ059223.1 · 30,093–30,197 bp · −
trnD-GUC · PQ059223.1 · 30,723–30,796 bp · −
trnY-GUA · PQ059223.1 · 30,910–30,993 bp · −
trnE-UUC · PQ059223.1 · 31,053–31,125 bp · −
trnS-UGA · PQ059223.1 · 35,744–35,835 bp · −
trnfM-CAU · PQ059223.1 · 36,836–36,909 bp · −
rps14 · PQ059223.1 · 37,059–37,361 bp · −
psaB · PQ059223.1 · 37,490–39,694 bp · −
psaA · PQ059223.1 · 39,720–41,972 bp · −
ycf3 · PQ059223.1 · 42,679–44,602 bp · −
rps4 · PQ059223.1 · 45,847–46,452 bp · −
trnT-UGU · PQ059223.1 · 46,794–46,866 bp · −
ndhJ · PQ059223.1 · 49,128–49,604 bp · −
ndhK · PQ059223.1 · 49,713–50,390 bp · −
ndhC · PQ059223.1 · 50,444–50,806 bp · −
trnV-UAC · PQ059223.1 · 51,793–52,445 bp · −
atpE · PQ059223.1 · 52,900–53,301 bp · −
atpB · PQ059223.1 · 53,298–54,794 bp · −
psbJ · PQ059223.1 · 64,532–64,654 bp · −
psbL · PQ059223.1 · 64,788–64,904 bp · −
psbF · PQ059223.1 · 64,928–65,047 bp · −
psbE · PQ059223.1 · 65,062–65,313 bp · −
trnW-CCA · PQ059223.1 · 66,694–66,767 bp · −
trnP-UGG · PQ059223.1 · 66,937–67,010 bp · −
rpl20 · PQ059223.1 · 68,816–69,202 bp · −
rps12 · PQ059223.1 · 69,985–70,110 bp · −
rps12 · PQ059223.1 · 97,248–98,038 bp · −
clpP · PQ059223.1 · 70,252–72,180 bp · −
psbN · PQ059223.1 · 74,508–74,639 bp · −
rpoA · PQ059223.1 · 78,202–79,002 bp · −
rps11 · PQ059223.1 · 79,074–79,490 bp · −
rpl36 · PQ059223.1 · 79,592–79,705 bp · −
infA · PQ059223.1 · 79,800–80,033 bp · −
rps8 · PQ059223.1 · 80,157–80,567 bp · −
rpl14 · PQ059223.1 · 80,720–81,088 bp · −
rpl16 · PQ059223.1 · 81,215–82,448 bp · −
rps3 · PQ059223.1 · 82,604–83,266 bp · −
rpl22 · PQ059223.1 · 83,268–83,723 bp · −
rps19 · PQ059223.1 · 83,783–84,061 bp · −
rpl2 · PQ059223.1 · 84,116–85,597 bp · −
rpl23 · PQ059223.1 · 85,616–85,897 bp · −
trnI-CAU · PQ059223.1 · 86,057–86,130 bp · −
trnL-CAA · PQ059223.1 · 93,618–93,698 bp · −
ndhB · PQ059223.1 · 94,241–96,452 bp · −
rps7 · PQ059223.1 · 96,727–97,194 bp · −
trnN-GUU · PQ059223.1 · 108,072–108,143 bp · −
ndhF · PQ059223.1 · 109,200–111,461 bp · −
ndhD · PQ059223.1 · 113,811–115,313 bp · −
psaC · PQ059223.1 · 115,441–115,686 bp · −
ndhE · PQ059223.1 · 115,942–116,247 bp · −
ndhG · PQ059223.1 · 116,464–116,994 bp · −
ndhI · PQ059223.1 · 117,361–117,861 bp · −
ndhA · PQ059223.1 · 117,947–120,068 bp · −
ndhH · PQ059223.1 · 120,070–121,281 bp · −
rps15 · PQ059223.1 · 121,348–121,620 bp · −
ycf1 · PQ059223.1 · 121,816–127,452 bp · −
trnR-ACG · PQ059223.1 · 128,291–128,364 bp · −
rrn5 · PQ059223.1 · 128,599–128,719 bp · −
rrn4.5 · PQ059223.1 · 128,967–129,069 bp · −
rrn23 · PQ059223.1 · 129,168–131,979 bp · −
trnA-UGC · PQ059223.1 · 132,142–133,032 bp · −
trnI-GAU · PQ059223.1 · 133,097–134,117 bp · −
ycf68 · PQ059223.1 · 133,669–133,962 bp · −
rrn16 · PQ059223.1 · 134,416–135,906 bp · −
trnV-GAC · PQ059223.1 · 136,133–136,204 bp · −
ycf15 · PQ059223.1 · 142,456–142,704 bp · −
ycf2 · PQ059223.1 · 142,795–149,595 bp · −
psbK · PQ059223.1 · 7,449–7,634 bp · +
psbI · PQ059223.1 · 8,024–8,134 bp · +
trnG-UCC · PQ059223.1 · 9,042–9,798 bp · +
trnR-UCU · PQ059223.1 · 9,973–10,044 bp · +
trnC-GCA · PQ059223.1 · 28,175–28,245 bp · +
petN · PQ059223.1 · 28,961–29,050 bp · +
trnT-GGU · PQ059223.1 · 31,701–31,772 bp · +
psbD · PQ059223.1 · 33,078–34,139 bp · +
psbC · PQ059223.1 · 34,087–35,508 bp · +
psbZ · PQ059223.1 · 36,151–36,339 bp · +
trnG-GCC · PQ059223.1 · 36,617–36,687 bp · +
trnS-GGA · PQ059223.1 · 45,485–45,571 bp · +
trnL-UAA · PQ059223.1 · 47,547–48,106 bp · +
trnF-GAA · PQ059223.1 · 48,407–48,479 bp · +
trnM-CAU · PQ059223.1 · 52,634–52,706 bp · +
rbcL · PQ059223.1 · 55,545–57,008 bp · +
accD · PQ059223.1 · 57,723–59,201 bp · +
psaI · PQ059223.1 · 59,907–60,017 bp · +
ycf4 · PQ059223.1 · 60,451–61,005 bp · +
cemA · PQ059223.1 · 61,754–62,353 bp · +
petA · PQ059223.1 · 62,560–63,522 bp · +
petL · PQ059223.1 · 66,191–66,286 bp · +
petG · PQ059223.1 · 66,462–66,575 bp · +
psaJ · PQ059223.1 · 67,282–67,416 bp · +
rpl33 · PQ059223.1 · 67,901–68,101 bp · +
rps18 · PQ059223.1 · 68,276–68,581 bp · +
rps12 · PQ059223.1 · 137,776–138,566 bp · +
psbB · PQ059223.1 · 72,632–74,158 bp · +
psbT · PQ059223.1 · 74,340–74,447 bp · +
psbH · PQ059223.1 · 74,743–74,964 bp · +
petB · PQ059223.1 · 75,089–76,458 bp · +
petD · PQ059223.1 · 76,641–77,847 bp · +
ycf2 · PQ059223.1 · 86,219–93,019 bp · +
ycf15 · PQ059223.1 · 93,110–93,358 bp · +
trnV-GAC · PQ059223.1 · 99,610–99,681 bp · +
rrn16 · PQ059223.1 · 99,908–101,398 bp · +
trnI-GAU · PQ059223.1 · 101,697–102,717 bp · +
trnA-UGC · PQ059223.1 · 102,782–103,672 bp · +
rrn23 · PQ059223.1 · 103,835–106,646 bp · +
rrn4.5 · PQ059223.1 · 106,745–106,847 bp · +
rrn5 · PQ059223.1 · 107,095–107,215 bp · +
trnR-ACG · PQ059223.1 · 107,450–107,523 bp · +
rpl32 · PQ059223.1 · 111,789–111,965 bp · +
trnL-UAG · PQ059223.1 · 112,412–112,491 bp · +
ccsA · PQ059223.1 · 112,580–113,554 bp · +
trnN-GUU · PQ059223.1 · 127,671–127,742 bp · +
rps7 · PQ059223.1 · 138,620–139,087 bp · +
ndhB · PQ059223.1 · 139,362–141,573 bp · +
trnL-CAA · PQ059223.1 · 142,116–142,196 bp · +
trnI-CAU · PQ059223.1 · 149,684–149,757 bp · +
rpl23 · PQ059223.1 · 149,917–150,198 bp · +
rpl2 · PQ059223.1 · 150,217–151,698 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria orientalis subsp. bornmuelleri
ANNOTATED PLASTOME
PQ059223.1
151,798 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37950 75899 113848 151798 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6317 1161 Locate
trnQ-UUG gene − 7053 7124 72 Locate
psbK gene + 7449 7634 186 Locate
psbI gene + 8024 8134 111 Locate
trnS-GCU gene − 8252 8339 88 Locate
trnG-UCC gene + 9042 9798 757 Locate
trnR-UCU gene + 9973 10044 72 Locate
atpA gene − 10141 11664 1524 Locate
atpF gene − 11746 12975 1230 Locate
atpH gene − 13331 13576 246 Locate
atpI gene − 14564 15307 744 Locate
rps2 gene − 15653 16363 711 Locate
rpoC2 gene − 16579 20784 4206 Locate
rpoC1 gene − 20939 23775 2837 Locate
rpoB gene − 23802 27014 3213 Locate
trnC-GCA gene + 28175 28245 71 Locate
petN gene + 28961 29050 90 Locate
psbM gene − 30093 30197 105 Locate
trnD-GUC gene − 30723 30796 74 Locate
trnY-GUA gene − 30910 30993 84 Locate
trnE-UUC gene − 31053 31125 73 Locate
trnT-GGU gene + 31701 31772 72 Locate
psbD gene + 33078 34139 1062 Locate
psbC gene + 34087 35508 1422 Locate
trnS-UGA gene − 35744 35835 92 Locate
psbZ gene + 36151 36339 189 Locate
trnG-GCC gene + 36617 36687 71 Locate
trnfM-CAU gene − 36836 36909 74 Locate
rps14 gene − 37059 37361 303 Locate
psaB gene − 37490 39694 2205 Locate
psaA gene − 39720 41972 2253 Locate
ycf3 gene − 42679 44602 1924 Locate
trnS-GGA gene + 45485 45571 87 Locate
rps4 gene − 45847 46452 606 Locate
trnT-UGU gene − 46794 46866 73 Locate
trnL-UAA gene + 47547 48106 560 Locate
trnF-GAA gene + 48407 48479 73 Locate
ndhJ gene − 49128 49604 477 Locate
ndhK gene − 49713 50390 678 Locate
ndhC gene − 50444 50806 363 Locate
trnV-UAC gene − 51793 52445 653 Locate
trnM-CAU gene + 52634 52706 73 Locate
atpE gene − 52900 53301 402 Locate
atpB gene − 53298 54794 1497 Locate
rbcL gene + 55545 57008 1464 Locate
accD gene + 57723 59201 1479 Locate
psaI gene + 59907 60017 111 Locate
ycf4 gene + 60451 61005 555 Locate
cemA gene + 61754 62353 600 Locate
petA gene + 62560 63522 963 Locate
psbJ gene − 64532 64654 123 Locate
psbL gene − 64788 64904 117 Locate
psbF gene − 64928 65047 120 Locate
psbE gene − 65062 65313 252 Locate
petL gene + 66191 66286 96 Locate
petG gene + 66462 66575 114 Locate
trnW-CCA gene − 66694 66767 74 Locate
trnP-UGG gene − 66937 67010 74 Locate
psaJ gene + 67282 67416 135 Locate
rpl33 gene + 67901 68101 201 Locate
rps18 gene + 68276 68581 306 Locate
rpl20 gene − 68816 69202 387 Locate
rps12 gene − 69985 70110 126 Locate
clpP gene − 70252 72180 1929 Locate
psbB gene + 72632 74158 1527 Locate
psbT gene + 74340 74447 108 Locate
psbN gene − 74508 74639 132 Locate
psbH gene + 74743 74964 222 Locate
petB gene + 75089 76458 1370 Locate
petD gene + 76641 77847 1207 Locate
rpoA gene − 78202 79002 801 Locate
rps11 gene − 79074 79490 417 Locate
rpl36 gene − 79592 79705 114 Locate
infA gene − 79800 80033 234 Locate
rps8 gene − 80157 80567 411 Locate
rpl14 gene − 80720 81088 369 Locate
rpl16 gene − 81215 82448 1234 Locate
rps3 gene − 82604 83266 663 Locate
rpl22 gene − 83268 83723 456 Locate
rps19 gene − 83783 84061 279 Locate
rpl2 gene − 84116 85597 1482 Locate
rpl23 gene − 85616 85897 282 Locate
trnI-CAU gene − 86057 86130 74 Locate
ycf2 gene + 86219 93019 6801 Locate
ycf15 gene + 93110 93358 249 Locate
trnL-CAA gene − 93618 93698 81 Locate
ndhB gene − 94241 96452 2212 Locate
rps7 gene − 96727 97194 468 Locate
rps12 gene − 97248 98038 791 Locate
trnV-GAC gene + 99610 99681 72 Locate
rrn16 gene + 99908 101398 1491 Locate
trnI-GAU gene + 101697 102717 1021 Locate
trnA-UGC gene + 102782 103672 891 Locate
rrn23 gene + 103835 106646 2812 Locate
rrn4.5 gene + 106745 106847 103 Locate
rrn5 gene + 107095 107215 121 Locate
trnR-ACG gene + 107450 107523 74 Locate
trnN-GUU gene − 108072 108143 72 Locate
ndhF gene − 109200 111461 2262 Locate
rpl32 gene + 111789 111965 177 Locate
trnL-UAG gene + 112412 112491 80 Locate
ccsA gene + 112580 113554 975 Locate
ndhD gene − 113811 115313 1503 Locate
psaC gene − 115441 115686 246 Locate
ndhE gene − 115942 116247 306 Locate
ndhG gene − 116464 116994 531 Locate
ndhI gene − 117361 117861 501 Locate
ndhA gene − 117947 120068 2122 Locate
ndhH gene − 120070 121281 1212 Locate
rps15 gene − 121348 121620 273 Locate
ycf1 gene − 121816 127452 5637 Locate
trnN-GUU gene + 127671 127742 72 Locate
trnR-ACG gene − 128291 128364 74 Locate
rrn5 gene − 128599 128719 121 Locate
rrn4.5 gene − 128967 129069 103 Locate
rrn23 gene − 129168 131979 2812 Locate
trnA-UGC gene − 132142 133032 891 Locate
trnI-GAU gene − 133097 134117 1021 Locate
ycf68 gene − 133669 133962 294 Locate
rrn16 gene − 134416 135906 1491 Locate
trnV-GAC gene − 136133 136204 72 Locate
rps12 gene + 137776 138566 791 Locate
rps7 gene + 138620 139087 468 Locate
ndhB gene + 139362 141573 2212 Locate
trnL-CAA gene + 142116 142196 81 Locate
ycf15 gene − 142456 142704 249 Locate
ycf2 gene − 142795 149595 6801 Locate
trnI-CAU gene + 149684 149757 74 Locate
rpl23 gene + 149917 150198 282 Locate
rpl2 gene + 150217 151698 1482 Locate
Status Available
Accession PQ059223.1
Length 151,798 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources