Scutellaria orientalis subsp. orientalis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059343.1 · 3–76 bp · −
psbA · PQ059343.1 · 374–1,432 bp · −
trnK-UUU · PQ059343.1 · 1,674–4,256 bp · −
matK · PQ059343.1 · 1,964–3,490 bp · −
rps16 · PQ059343.1 · 5,156–6,313 bp · −
trnQ-UUG · PQ059343.1 · 7,425–7,496 bp · −
trnS-GCU · PQ059343.1 · 8,612–8,699 bp · −
atpA · PQ059343.1 · 10,499–12,022 bp · −
atpF · PQ059343.1 · 12,104–13,333 bp · −
atpH · PQ059343.1 · 13,694–13,939 bp · −
atpI · PQ059343.1 · 14,927–15,670 bp · −
rps2 · PQ059343.1 · 16,015–16,725 bp · −
rpoC2 · PQ059343.1 · 16,939–21,144 bp · −
rpoC1 · PQ059343.1 · 21,299–24,133 bp · −
rpoB · PQ059343.1 · 24,160–27,372 bp · −
psbM · PQ059343.1 · 30,408–30,512 bp · −
trnD-GUC · PQ059343.1 · 31,030–31,103 bp · −
trnY-GUA · PQ059343.1 · 31,217–31,300 bp · −
trnE-UUC · PQ059343.1 · 31,360–31,432 bp · −
trnS-UGA · PQ059343.1 · 36,051–36,142 bp · −
trnfM-CAU · PQ059343.1 · 37,143–37,216 bp · −
rps14 · PQ059343.1 · 37,371–37,673 bp · −
psaB · PQ059343.1 · 37,802–40,006 bp · −
psaA · PQ059343.1 · 40,032–42,284 bp · −
ycf3 · PQ059343.1 · 42,980–44,901 bp · −
rps4 · PQ059343.1 · 46,152–46,757 bp · −
trnT-UGU · PQ059343.1 · 47,104–47,176 bp · −
ndhJ · PQ059343.1 · 49,441–49,917 bp · −
ndhK · PQ059343.1 · 50,026–50,703 bp · −
ndhC · PQ059343.1 · 50,757–51,119 bp · −
trnV-UAC · PQ059343.1 · 52,105–52,757 bp · −
atpE · PQ059343.1 · 53,212–53,613 bp · −
atpB · PQ059343.1 · 53,610–55,106 bp · −
psbJ · PQ059343.1 · 64,842–64,964 bp · −
psbL · PQ059343.1 · 65,098–65,214 bp · −
psbF · PQ059343.1 · 65,238–65,357 bp · −
psbE · PQ059343.1 · 65,372–65,623 bp · −
trnW-CCA · PQ059343.1 · 67,000–67,073 bp · −
trnP-UGG · PQ059343.1 · 67,243–67,316 bp · −
rpl20 · PQ059343.1 · 69,117–69,503 bp · −
rps12 · PQ059343.1 · 70,282–70,407 bp · −
rps12 · PQ059343.1 · 97,594–98,384 bp · −
clpP · PQ059343.1 · 70,549–72,479 bp · −
psbN · PQ059343.1 · 74,823–74,954 bp · −
rpoA · PQ059343.1 · 78,515–79,315 bp · −
rps11 · PQ059343.1 · 79,387–79,803 bp · −
rpl36 · PQ059343.1 · 79,905–80,018 bp · −
infA · PQ059343.1 · 80,113–80,346 bp · −
rps8 · PQ059343.1 · 80,470–80,880 bp · −
rpl14 · PQ059343.1 · 81,032–81,400 bp · −
rpl16 · PQ059343.1 · 81,527–82,786 bp · −
rps3 · PQ059343.1 · 82,942–83,604 bp · −
rpl22 · PQ059343.1 · 83,606–84,061 bp · −
rps19 · PQ059343.1 · 84,121–84,399 bp · −
rpl2 · PQ059343.1 · 84,453–85,934 bp · −
rpl23 · PQ059343.1 · 85,953–86,234 bp · −
trnI-CAU · PQ059343.1 · 86,394–86,467 bp · −
trnL-CAA · PQ059343.1 · 93,964–94,044 bp · −
ndhB · PQ059343.1 · 94,587–96,744 bp · −
rps7 · PQ059343.1 · 97,073–97,540 bp · −
trnN-GUU · PQ059343.1 · 108,414–108,485 bp · −
ndhF · PQ059343.1 · 109,542–111,803 bp · −
ndhD · PQ059343.1 · 114,171–115,700 bp · −
psaC · PQ059343.1 · 115,801–116,046 bp · −
ndhE · PQ059343.1 · 116,295–116,600 bp · −
ndhG · PQ059343.1 · 116,817–117,347 bp · −
ndhI · PQ059343.1 · 117,709–118,209 bp · −
ndhA · PQ059343.1 · 118,290–120,411 bp · −
ndhH · PQ059343.1 · 120,413–121,594 bp · −
rps15 · PQ059343.1 · 121,691–121,963 bp · −
ycf1 · PQ059343.1 · 122,159–127,783 bp · −
trnR-ACG · PQ059343.1 · 128,622–128,695 bp · −
rrn5 · PQ059343.1 · 128,930–129,050 bp · −
rrn4.5 · PQ059343.1 · 129,298–129,400 bp · −
rrn23 · PQ059343.1 · 129,499–132,310 bp · −
trnA-UGC · PQ059343.1 · 132,473–133,359 bp · −
trnI-GAU · PQ059343.1 · 133,424–134,444 bp · −
ycf68 · PQ059343.1 · 133,996–134,289 bp · −
rrn16 · PQ059343.1 · 134,743–136,233 bp · −
trnV-GAC · PQ059343.1 · 136,460–136,531 bp · −
ycf15 · PQ059343.1 · 142,783–143,031 bp · −
ycf2 · PQ059343.1 · 143,122–149,931 bp · −
psbK · PQ059343.1 · 7,821–8,006 bp · +
psbI · PQ059343.1 · 8,384–8,494 bp · +
trnG-UCC · PQ059343.1 · 9,400–10,156 bp · +
trnR-UCU · PQ059343.1 · 10,331–10,402 bp · +
trnC-GCA · PQ059343.1 · 28,533–28,603 bp · +
petN · PQ059343.1 · 29,318–29,407 bp · +
trnT-GGU · PQ059343.1 · 32,008–32,079 bp · +
psbD · PQ059343.1 · 33,385–34,446 bp · +
psbC · PQ059343.1 · 34,394–35,815 bp · +
psbZ · PQ059343.1 · 36,458–36,646 bp · +
trnG-GCC · PQ059343.1 · 36,922–36,992 bp · +
trnS-GGA · PQ059343.1 · 45,790–45,876 bp · +
trnL-UAA · PQ059343.1 · 47,861–48,420 bp · +
trnF-GAA · PQ059343.1 · 48,729–48,801 bp · +
trnM-CAU · PQ059343.1 · 52,946–53,018 bp · +
rbcL · PQ059343.1 · 55,858–57,321 bp · +
accD · PQ059343.1 · 58,035–59,513 bp · +
psaI · PQ059343.1 · 60,221–60,331 bp · +
ycf4 · PQ059343.1 · 60,765–61,319 bp · +
cemA · PQ059343.1 · 62,068–62,667 bp · +
petA · PQ059343.1 · 62,874–63,836 bp · +
petL · PQ059343.1 · 66,498–66,593 bp · +
petG · PQ059343.1 · 66,768–66,881 bp · +
psaJ · PQ059343.1 · 67,588–67,722 bp · +
rpl33 · PQ059343.1 · 68,199–68,399 bp · +
rps18 · PQ059343.1 · 68,574–68,879 bp · +
rps12 · PQ059343.1 · 138,103–138,893 bp · +
psbB · PQ059343.1 · 72,938–74,464 bp · +
psbT · PQ059343.1 · 74,655–74,762 bp · +
psbH · PQ059343.1 · 75,058–75,279 bp · +
petB · PQ059343.1 · 75,404–76,774 bp · +
petD · PQ059343.1 · 76,957–78,154 bp · +
ycf2 · PQ059343.1 · 86,556–93,365 bp · +
ycf15 · PQ059343.1 · 93,456–93,704 bp · +
trnV-GAC · PQ059343.1 · 99,956–100,027 bp · +
rrn16 · PQ059343.1 · 100,254–101,744 bp · +
trnI-GAU · PQ059343.1 · 102,043–103,063 bp · +
trnA-UGC · PQ059343.1 · 103,128–104,014 bp · +
rrn23 · PQ059343.1 · 104,177–106,988 bp · +
rrn4.5 · PQ059343.1 · 107,087–107,189 bp · +
rrn5 · PQ059343.1 · 107,437–107,557 bp · +
trnR-ACG · PQ059343.1 · 107,792–107,865 bp · +
rpl32 · PQ059343.1 · 112,131–112,307 bp · +
trnL-UAG · PQ059343.1 · 112,755–112,834 bp · +
ccsA · PQ059343.1 · 112,924–113,898 bp · +
trnN-GUU · PQ059343.1 · 128,002–128,073 bp · +
rps7 · PQ059343.1 · 138,947–139,414 bp · +
ndhB · PQ059343.1 · 139,743–141,900 bp · +
trnL-CAA · PQ059343.1 · 142,443–142,523 bp · +
trnI-CAU · PQ059343.1 · 150,020–150,093 bp · +
rpl23 · PQ059343.1 · 150,253–150,534 bp · +
rpl2 · PQ059343.1 · 150,553–152,034 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria orientalis subsp. orientalis
ANNOTATED PLASTOME
PQ059343.1
152,128 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38032 76064 114096 152128 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4256 2583 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5156 6313 1158 Locate
trnQ-UUG gene − 7425 7496 72 Locate
psbK gene + 7821 8006 186 Locate
psbI gene + 8384 8494 111 Locate
trnS-GCU gene − 8612 8699 88 Locate
trnG-UCC gene + 9400 10156 757 Locate
trnR-UCU gene + 10331 10402 72 Locate
atpA gene − 10499 12022 1524 Locate
atpF gene − 12104 13333 1230 Locate
atpH gene − 13694 13939 246 Locate
atpI gene − 14927 15670 744 Locate
rps2 gene − 16015 16725 711 Locate
rpoC2 gene − 16939 21144 4206 Locate
rpoC1 gene − 21299 24133 2835 Locate
rpoB gene − 24160 27372 3213 Locate
trnC-GCA gene + 28533 28603 71 Locate
petN gene + 29318 29407 90 Locate
psbM gene − 30408 30512 105 Locate
trnD-GUC gene − 31030 31103 74 Locate
trnY-GUA gene − 31217 31300 84 Locate
trnE-UUC gene − 31360 31432 73 Locate
trnT-GGU gene + 32008 32079 72 Locate
psbD gene + 33385 34446 1062 Locate
psbC gene + 34394 35815 1422 Locate
trnS-UGA gene − 36051 36142 92 Locate
psbZ gene + 36458 36646 189 Locate
trnG-GCC gene + 36922 36992 71 Locate
trnfM-CAU gene − 37143 37216 74 Locate
rps14 gene − 37371 37673 303 Locate
psaB gene − 37802 40006 2205 Locate
psaA gene − 40032 42284 2253 Locate
ycf3 gene − 42980 44901 1922 Locate
trnS-GGA gene + 45790 45876 87 Locate
rps4 gene − 46152 46757 606 Locate
trnT-UGU gene − 47104 47176 73 Locate
trnL-UAA gene + 47861 48420 560 Locate
trnF-GAA gene + 48729 48801 73 Locate
ndhJ gene − 49441 49917 477 Locate
ndhK gene − 50026 50703 678 Locate
ndhC gene − 50757 51119 363 Locate
trnV-UAC gene − 52105 52757 653 Locate
trnM-CAU gene + 52946 53018 73 Locate
atpE gene − 53212 53613 402 Locate
atpB gene − 53610 55106 1497 Locate
rbcL gene + 55858 57321 1464 Locate
accD gene + 58035 59513 1479 Locate
psaI gene + 60221 60331 111 Locate
ycf4 gene + 60765 61319 555 Locate
cemA gene + 62068 62667 600 Locate
petA gene + 62874 63836 963 Locate
psbJ gene − 64842 64964 123 Locate
psbL gene − 65098 65214 117 Locate
psbF gene − 65238 65357 120 Locate
psbE gene − 65372 65623 252 Locate
petL gene + 66498 66593 96 Locate
petG gene + 66768 66881 114 Locate
trnW-CCA gene − 67000 67073 74 Locate
trnP-UGG gene − 67243 67316 74 Locate
psaJ gene + 67588 67722 135 Locate
rpl33 gene + 68199 68399 201 Locate
rps18 gene + 68574 68879 306 Locate
rpl20 gene − 69117 69503 387 Locate
rps12 gene − 70282 70407 126 Locate
clpP gene − 70549 72479 1931 Locate
psbB gene + 72938 74464 1527 Locate
psbT gene + 74655 74762 108 Locate
psbN gene − 74823 74954 132 Locate
psbH gene + 75058 75279 222 Locate
petB gene + 75404 76774 1371 Locate
petD gene + 76957 78154 1198 Locate
rpoA gene − 78515 79315 801 Locate
rps11 gene − 79387 79803 417 Locate
rpl36 gene − 79905 80018 114 Locate
infA gene − 80113 80346 234 Locate
rps8 gene − 80470 80880 411 Locate
rpl14 gene − 81032 81400 369 Locate
rpl16 gene − 81527 82786 1260 Locate
rps3 gene − 82942 83604 663 Locate
rpl22 gene − 83606 84061 456 Locate
rps19 gene − 84121 84399 279 Locate
rpl2 gene − 84453 85934 1482 Locate
rpl23 gene − 85953 86234 282 Locate
trnI-CAU gene − 86394 86467 74 Locate
ycf2 gene + 86556 93365 6810 Locate
ycf15 gene + 93456 93704 249 Locate
trnL-CAA gene − 93964 94044 81 Locate
ndhB gene − 94587 96744 2158 Locate
rps7 gene − 97073 97540 468 Locate
rps12 gene − 97594 98384 791 Locate
trnV-GAC gene + 99956 100027 72 Locate
rrn16 gene + 100254 101744 1491 Locate
trnI-GAU gene + 102043 103063 1021 Locate
trnA-UGC gene + 103128 104014 887 Locate
rrn23 gene + 104177 106988 2812 Locate
rrn4.5 gene + 107087 107189 103 Locate
rrn5 gene + 107437 107557 121 Locate
trnR-ACG gene + 107792 107865 74 Locate
trnN-GUU gene − 108414 108485 72 Locate
ndhF gene − 109542 111803 2262 Locate
rpl32 gene + 112131 112307 177 Locate
trnL-UAG gene + 112755 112834 80 Locate
ccsA gene + 112924 113898 975 Locate
ndhD gene − 114171 115700 1530 Locate
psaC gene − 115801 116046 246 Locate
ndhE gene − 116295 116600 306 Locate
ndhG gene − 116817 117347 531 Locate
ndhI gene − 117709 118209 501 Locate
ndhA gene − 118290 120411 2122 Locate
ndhH gene − 120413 121594 1182 Locate
rps15 gene − 121691 121963 273 Locate
ycf1 gene − 122159 127783 5625 Locate
trnN-GUU gene + 128002 128073 72 Locate
trnR-ACG gene − 128622 128695 74 Locate
rrn5 gene − 128930 129050 121 Locate
rrn4.5 gene − 129298 129400 103 Locate
rrn23 gene − 129499 132310 2812 Locate
trnA-UGC gene − 132473 133359 887 Locate
trnI-GAU gene − 133424 134444 1021 Locate
ycf68 gene − 133996 134289 294 Locate
rrn16 gene − 134743 136233 1491 Locate
trnV-GAC gene − 136460 136531 72 Locate
rps12 gene + 138103 138893 791 Locate
rps7 gene + 138947 139414 468 Locate
ndhB gene + 139743 141900 2158 Locate
trnL-CAA gene + 142443 142523 81 Locate
ycf15 gene − 142783 143031 249 Locate
ycf2 gene − 143122 149931 6810 Locate
trnI-CAU gene + 150020 150093 74 Locate
rpl23 gene + 150253 150534 282 Locate
rpl2 gene + 150553 152034 1482 Locate
Status Available
Accession PQ059343.1
Length 152,128 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources