Scutellaria orientalis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420933.1 · 4–77 bp · −
psbA · MW420933.1 · 375–1,433 bp · −
trnK-UUU · MW420933.1 · 1,675–4,253 bp · −
matK · MW420933.1 · 1,965–3,512 bp · −
rps16 · MW420933.1 · 5,157–6,314 bp · −
trnQ-UUC · MW420933.1 · 7,444–7,515 bp · −
trnS-GCU · MW420933.1 · 8,642–8,729 bp · −
atpA · MW420933.1 · 10,517–12,040 bp · −
atpF · MW420933.1 · 12,122–13,350 bp · −
atpH · MW420933.1 · 13,713–13,958 bp · −
atpI · MW420933.1 · 14,945–15,688 bp · −
rps2 · MW420933.1 · 16,029–16,739 bp · −
rpoC2 · MW420933.1 · 16,954–21,159 bp · −
rpoC1 · MW420933.1 · 21,314–24,148 bp · −
rpoB · MW420933.1 · 24,175–27,387 bp · −
psbM · MW420933.1 · 30,474–30,578 bp · −
trnD-GUC · MW420933.1 · 31,104–31,177 bp · −
trnY-GUA · MW420933.1 · 31,287–31,370 bp · −
trnE-UUC · MW420933.1 · 31,430–31,502 bp · −
trnS-UCA · MW420933.1 · 36,120–36,212 bp · −
trnfM-CAU · MW420933.1 · 37,209–37,282 bp · −
rps14 · MW420933.1 · 37,437–37,739 bp · −
psaB · MW420933.1 · 37,868–40,072 bp · −
psaA · MW420933.1 · 40,098–42,350 bp · −
ycf3 · MW420933.1 · 43,046–44,965 bp · −
rps4 · MW420933.1 · 46,218–46,823 bp · −
trnT-UGU · MW420933.1 · 47,166–47,238 bp · −
ndhJ · MW420933.1 · 49,511–49,987 bp · −
ndhK · MW420933.1 · 50,096–50,773 bp · −
ndhC · MW420933.1 · 50,827–51,189 bp · −
trnV-UAC · MW420933.1 · 52,180–52,832 bp · −
atpE · MW420933.1 · 53,287–53,688 bp · −
atpB · MW420933.1 · 53,685–55,181 bp · −
pabJ · MW420933.1 · 64,917–65,039 bp · −
psbL · MW420933.1 · 65,173–65,289 bp · −
psbF · MW420933.1 · 65,313–65,432 bp · −
psbE · MW420933.1 · 65,447–65,698 bp · −
trnW-CCA · MW420933.1 · 67,074–67,147 bp · −
trnP-UGG · MW420933.1 · 67,317–67,390 bp · −
rpl20 · MW420933.1 · 69,184–69,570 bp · −
rps12 · MW420933.1 · 70,355–70,480 bp · −
rps12 · MW420933.1 · 97,624–98,414 bp · −
clpP · MW420933.1 · 70,622–72,550 bp · −
psbN · MW420933.1 · 74,887–75,018 bp · −
rpoA · MW420933.1 · 78,570–79,370 bp · −
rps11 · MW420933.1 · 79,442–79,858 bp · −
rpl36 · MW420933.1 · 79,960–80,073 bp · −
infA · MW420933.1 · 80,168–80,401 bp · −
rps8 · MW420933.1 · 80,524–80,934 bp · −
rpl14 · MW420933.1 · 81,087–81,455 bp · −
rpl16 · MW420933.1 · 81,582–82,815 bp · −
rps3 · MW420933.1 · 82,971–83,633 bp · −
rpl22 · MW420933.1 · 83,635–84,090 bp · −
rps19 · MW420933.1 · 84,150–84,428 bp · −
rpl2 · MW420933.1 · 84,483–85,964 bp · −
rpl23 · MW420933.1 · 85,983–86,264 bp · −
trnI-CAU · MW420933.1 · 86,424–86,497 bp · −
trnL-CAA · MW420933.1 · 93,994–94,074 bp · −
ndhB · MW420933.1 · 94,617–96,828 bp · −
rps7 · MW420933.1 · 97,103–97,570 bp · −
ndhF · MW420933.1 · 109,578–111,839 bp · −
ndhD · MW420933.1 · 114,185–115,714 bp · −
psaC · MW420933.1 · 115,815–116,060 bp · −
ndhE · MW420933.1 · 116,316–116,621 bp · −
ndhG · MW420933.1 · 116,838–117,368 bp · −
ndhI · MW420933.1 · 117,735–118,235 bp · −
ndhA · MW420933.1 · 118,316–120,437 bp · −
ndhH · MW420933.1 · 120,439–121,620 bp · −
rps15 · MW420933.1 · 121,717–121,989 bp · −
ycf1 · MW420933.1 · 122,183–127,708 bp · −
trnR-ACG · MW420933.1 · 128,658–128,731 bp · −
rrn5 · MW420933.1 · 128,966–129,086 bp · −
rrn4.5 · MW420933.1 · 129,334–129,436 bp · −
rrn23 · MW420933.1 · 129,535–132,346 bp · −
trnA-UGC · MW420933.1 · 132,516–133,401 bp · −
trnI-GAU · MW420933.1 · 133,467–134,486 bp · −
rrn16 · MW420933.1 · 134,785–136,275 bp · −
trnV-GAC · MW420933.1 · 136,502–136,573 bp · −
ycf15 · MW420933.1 · 142,825–143,088 bp · −
ycf2 · MW420933.1 · 143,164–149,973 bp · −
psbK · MW420933.1 · 7,840–8,025 bp · +
psbI · MW420933.1 · 8,413–8,523 bp · +
trnG-CGA · MW420933.1 · 9,427–10,174 bp · +
trnR-UCU · MW420933.1 · 10,349–10,420 bp · +
trnC-GCA · MW420933.1 · 28,548–28,618 bp · +
petN · MW420933.1 · 29,334–29,423 bp · +
trnT-GGU · MW420933.1 · 32,079–32,150 bp · +
psbD · MW420933.1 · 33,455–34,516 bp · +
psbC · MW420933.1 · 34,464–35,885 bp · +
psbZ · MW420933.1 · 36,529–36,717 bp · +
trnG-GCC · MW420933.1 · 36,994–37,064 bp · +
trnS-GGA · MW420933.1 · 45,856–45,942 bp · +
trnL-UAA · MW420933.1 · 47,923–48,484 bp · +
trnF-GAA · MW420933.1 · 48,793–48,865 bp · +
trnM-CAU · MW420933.1 · 53,021–53,093 bp · +
rbcL · MW420933.1 · 55,954–57,396 bp · +
accD · MW420933.1 · 58,110–59,588 bp · +
psaI · MW420933.1 · 60,295–60,405 bp · +
ycf4 · MW420933.1 · 60,839–61,393 bp · +
cemA · MW420933.1 · 62,082–62,741 bp · +
petA · MW420933.1 · 62,948–63,910 bp · +
petL · MW420933.1 · 66,572–66,667 bp · +
petG · MW420933.1 · 66,842–66,955 bp · +
psbJ · MW420933.1 · 67,658–67,792 bp · +
rpl33 · MW420933.1 · 68,269–68,469 bp · +
rps18 · MW420933.1 · 68,644–68,949 bp · +
rps12 · MW420933.1 · 138,145–138,935 bp · +
psbB · MW420933.1 · 73,002–74,528 bp · +
psbT · MW420933.1 · 74,719–74,826 bp · +
psbH · MW420933.1 · 75,122–75,343 bp · +
petB · MW420933.1 · 75,468–76,831 bp · +
petD · MW420933.1 · 77,014–78,215 bp · +
ycf2 · MW420933.1 · 86,586–93,395 bp · +
ycf15 · MW420933.1 · 93,471–93,734 bp · +
trnV-GAC · MW420933.1 · 99,986–100,057 bp · +
rrn16 · MW420933.1 · 100,284–101,774 bp · +
trnI-GAU · MW420933.1 · 102,073–103,092 bp · +
trnA-UGC · MW420933.1 · 103,158–104,043 bp · +
rrn23 · MW420933.1 · 104,213–107,024 bp · +
rrn4.5 · MW420933.1 · 107,123–107,225 bp · +
rrn5 · MW420933.1 · 107,473–107,593 bp · +
trnR-ACG · MW420933.1 · 107,828–107,901 bp · +
trnN-GUU · MW420933.1 · 108,450–108,521 bp · +
rpl32 · MW420933.1 · 112,167–112,343 bp · +
trnL-UAG · MW420933.1 · 112,791–112,870 bp · +
ccsA · MW420933.1 · 112,972–113,946 bp · +
trnN-GUU · MW420933.1 · 128,038–128,109 bp · +
rps7 · MW420933.1 · 138,989–139,456 bp · +
ndhB · MW420933.1 · 139,731–141,942 bp · +
trnL-CAA · MW420933.1 · 142,485–142,565 bp · +
trnI-CAU · MW420933.1 · 150,062–150,135 bp · +
rpl23 · MW420933.1 · 150,295–150,576 bp · +
rpl2 · MW420933.1 · 150,595–152,076 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria orientalis
ANNOTATED PLASTOME
MW420933.1
152,176 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38044 76088 114132 152176 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 375 1433 1059 Locate
trnK-UUU gene − 1675 4253 2579 Locate
matK gene − 1965 3512 1548 Locate
rps16 gene − 5157 6314 1158 Locate
trnQ-UUC gene − 7444 7515 72 Locate
psbK gene + 7840 8025 186 Locate
psbI gene + 8413 8523 111 Locate
trnS-GCU gene − 8642 8729 88 Locate
trnG-CGA gene + 9427 10174 748 Locate
trnR-UCU gene + 10349 10420 72 Locate
atpA gene − 10517 12040 1524 Locate
atpF gene − 12122 13350 1229 Locate
atpH gene − 13713 13958 246 Locate
atpI gene − 14945 15688 744 Locate
rps2 gene − 16029 16739 711 Locate
rpoC2 gene − 16954 21159 4206 Locate
rpoC1 gene − 21314 24148 2835 Locate
rpoB gene − 24175 27387 3213 Locate
trnC-GCA gene + 28548 28618 71 Locate
petN gene + 29334 29423 90 Locate
psbM gene − 30474 30578 105 Locate
trnD-GUC gene − 31104 31177 74 Locate
trnY-GUA gene − 31287 31370 84 Locate
trnE-UUC gene − 31430 31502 73 Locate
trnT-GGU gene + 32079 32150 72 Locate
psbD gene + 33455 34516 1062 Locate
psbC gene + 34464 35885 1422 Locate
trnS-UCA gene − 36120 36212 93 Locate
psbZ gene + 36529 36717 189 Locate
trnG-GCC gene + 36994 37064 71 Locate
trnfM-CAU gene − 37209 37282 74 Locate
rps14 gene − 37437 37739 303 Locate
psaB gene − 37868 40072 2205 Locate
psaA gene − 40098 42350 2253 Locate
ycf3 gene − 43046 44965 1920 Locate
trnS-GGA gene + 45856 45942 87 Locate
rps4 gene − 46218 46823 606 Locate
trnT-UGU gene − 47166 47238 73 Locate
trnL-UAA gene + 47923 48484 562 Locate
trnF-GAA gene + 48793 48865 73 Locate
ndhJ gene − 49511 49987 477 Locate
ndhK gene − 50096 50773 678 Locate
ndhC gene − 50827 51189 363 Locate
trnV-UAC gene − 52180 52832 653 Locate
trnM-CAU gene + 53021 53093 73 Locate
atpE gene − 53287 53688 402 Locate
atpB gene − 53685 55181 1497 Locate
rbcL gene + 55954 57396 1443 Locate
accD gene + 58110 59588 1479 Locate
psaI gene + 60295 60405 111 Locate
ycf4 gene + 60839 61393 555 Locate
cemA gene + 62082 62741 660 Locate
petA gene + 62948 63910 963 Locate
pabJ gene − 64917 65039 123 Locate
psbL gene − 65173 65289 117 Locate
psbF gene − 65313 65432 120 Locate
psbE gene − 65447 65698 252 Locate
petL gene + 66572 66667 96 Locate
petG gene + 66842 66955 114 Locate
trnW-CCA gene − 67074 67147 74 Locate
trnP-UGG gene − 67317 67390 74 Locate
psbJ gene + 67658 67792 135 Locate
rpl33 gene + 68269 68469 201 Locate
rps18 gene + 68644 68949 306 Locate
rpl20 gene − 69184 69570 387 Locate
rps12 gene − 70355 70480 126 Locate
clpP gene − 70622 72550 1929 Locate
psbB gene + 73002 74528 1527 Locate
psbT gene + 74719 74826 108 Locate
psbN gene − 74887 75018 132 Locate
psbH gene + 75122 75343 222 Locate
petB gene + 75468 76831 1364 Locate
petD gene + 77014 78215 1202 Locate
rpoA gene − 78570 79370 801 Locate
rps11 gene − 79442 79858 417 Locate
rpl36 gene − 79960 80073 114 Locate
infA gene − 80168 80401 234 Locate
rps8 gene − 80524 80934 411 Locate
rpl14 gene − 81087 81455 369 Locate
rpl16 gene − 81582 82815 1234 Locate
rps3 gene − 82971 83633 663 Locate
rpl22 gene − 83635 84090 456 Locate
rps19 gene − 84150 84428 279 Locate
rpl2 gene − 84483 85964 1482 Locate
rpl23 gene − 85983 86264 282 Locate
trnI-CAU gene − 86424 86497 74 Locate
ycf2 gene + 86586 93395 6810 Locate
ycf15 gene + 93471 93734 264 Locate
trnL-CAA gene − 93994 94074 81 Locate
ndhB gene − 94617 96828 2212 Locate
rps7 gene − 97103 97570 468 Locate
rps12 gene − 97624 98414 791 Locate
trnV-GAC gene + 99986 100057 72 Locate
rrn16 gene + 100284 101774 1491 Locate
trnI-GAU gene + 102073 103092 1020 Locate
trnA-UGC gene + 103158 104043 886 Locate
rrn23 gene + 104213 107024 2812 Locate
rrn4.5 gene + 107123 107225 103 Locate
rrn5 gene + 107473 107593 121 Locate
trnR-ACG gene + 107828 107901 74 Locate
trnN-GUU gene + 108450 108521 72 Locate
ndhF gene − 109578 111839 2262 Locate
rpl32 gene + 112167 112343 177 Locate
trnL-UAG gene + 112791 112870 80 Locate
ccsA gene + 112972 113946 975 Locate
ndhD gene − 114185 115714 1530 Locate
psaC gene − 115815 116060 246 Locate
ndhE gene − 116316 116621 306 Locate
ndhG gene − 116838 117368 531 Locate
ndhI gene − 117735 118235 501 Locate
ndhA gene − 118316 120437 2122 Locate
ndhH gene − 120439 121620 1182 Locate
rps15 gene − 121717 121989 273 Locate
ycf1 gene − 122183 127708 5526 Locate
trnN-GUU gene + 128038 128109 72 Locate
trnR-ACG gene − 128658 128731 74 Locate
rrn5 gene − 128966 129086 121 Locate
rrn4.5 gene − 129334 129436 103 Locate
rrn23 gene − 129535 132346 2812 Locate
trnA-UGC gene − 132516 133401 886 Locate
trnI-GAU gene − 133467 134486 1020 Locate
rrn16 gene − 134785 136275 1491 Locate
trnV-GAC gene − 136502 136573 72 Locate
rps12 gene + 138145 138935 791 Locate
rps7 gene + 138989 139456 468 Locate
ndhB gene + 139731 141942 2212 Locate
trnL-CAA gene + 142485 142565 81 Locate
ycf15 gene − 142825 143088 264 Locate
ycf2 gene − 143164 149973 6810 Locate
trnI-CAU gene + 150062 150135 74 Locate
rpl23 gene + 150295 150576 282 Locate
rpl2 gene + 150595 152076 1482 Locate
Status Available
Accession MW420933.1
Length 152,176 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources