Scutellaria orthocalyx chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420955.1 · 2–75 bp · −
psbA · MW420955.1 · 378–1,436 bp · −
trnK-UUU · MW420955.1 · 1,682–4,247 bp · −
matK · MW420955.1 · 1,967–3,496 bp · −
rps16 · MW420955.1 · 5,128–6,300 bp · −
trnQ-UUC · MW420955.1 · 7,426–7,497 bp · −
trnS-GCU · MW420955.1 · 8,631–8,718 bp · −
atpA · MW420955.1 · 10,442–11,965 bp · −
atpF · MW420955.1 · 12,055–13,294 bp · −
atpH · MW420955.1 · 13,657–13,902 bp · −
atpI · MW420955.1 · 14,879–15,622 bp · −
rps2 · MW420955.1 · 15,967–16,677 bp · −
rpoC2 · MW420955.1 · 16,891–21,096 bp · −
rpoC1 · MW420955.1 · 21,251–24,092 bp · −
rpoB · MW420955.1 · 24,119–27,331 bp · −
psbM · MW420955.1 · 30,004–30,108 bp · −
trnD-GUC · MW420955.1 · 30,635–30,708 bp · −
trnY-GUA · MW420955.1 · 30,827–30,910 bp · −
trnE-UUC · MW420955.1 · 30,970–31,042 bp · −
trnS-UCA · MW420955.1 · 35,662–35,754 bp · −
trnfM-CAU · MW420955.1 · 36,749–36,822 bp · −
rps14 · MW420955.1 · 36,972–37,274 bp · −
psaB · MW420955.1 · 37,402–39,606 bp · −
psaA · MW420955.1 · 39,632–41,884 bp · −
ycf3 · MW420955.1 · 42,573–44,496 bp · −
rps4 · MW420955.1 · 45,762–46,367 bp · −
trnT-UGU · MW420955.1 · 46,705–46,777 bp · −
ndhJ · MW420955.1 · 49,073–49,549 bp · −
ndhK · MW420955.1 · 49,658–50,335 bp · −
ndhC · MW420955.1 · 50,388–50,750 bp · −
trnV-UAC · MW420955.1 · 51,692–52,344 bp · −
atpE · MW420955.1 · 52,814–53,215 bp · −
atpB · MW420955.1 · 53,212–54,708 bp · −
pabJ · MW420955.1 · 64,450–64,572 bp · −
psbL · MW420955.1 · 64,706–64,822 bp · −
psbF · MW420955.1 · 64,846–64,965 bp · −
psbE · MW420955.1 · 64,980–65,231 bp · −
trnW-CCA · MW420955.1 · 66,603–66,676 bp · −
trnP-UGG · MW420955.1 · 66,846–66,919 bp · −
rpl20 · MW420955.1 · 68,716–69,102 bp · −
rps12 · MW420955.1 · 69,887–70,012 bp · −
rps12 · MW420955.1 · 97,208–97,998 bp · −
clpP · MW420955.1 · 70,155–72,095 bp · −
psbN · MW420955.1 · 74,438–74,569 bp · −
rpoA · MW420955.1 · 77,937–78,950 bp · −
rps11 · MW420955.1 · 79,022–79,438 bp · −
rpl36 · MW420955.1 · 79,540–79,653 bp · −
infA · MW420955.1 · 79,748–79,981 bp · −
rps8 · MW420955.1 · 80,104–80,514 bp · −
rpl14 · MW420955.1 · 80,671–81,039 bp · −
rpl16 · MW420955.1 · 81,166–82,398 bp · −
rps3 · MW420955.1 · 82,554–83,216 bp · −
rpl22 · MW420955.1 · 83,218–83,673 bp · −
rps19 · MW420955.1 · 83,733–84,011 bp · −
rpl2 · MW420955.1 · 84,067–85,548 bp · −
rpl23 · MW420955.1 · 85,567–85,848 bp · −
trnI-CAU · MW420955.1 · 86,008–86,081 bp · −
trnL-CAA · MW420955.1 · 93,578–93,658 bp · −
ndhB · MW420955.1 · 94,201–96,412 bp · −
rps7 · MW420955.1 · 96,687–97,154 bp · −
ndhF · MW420955.1 · 109,197–111,437 bp · −
ndhD · MW420955.1 · 113,792–115,321 bp · −
psaC · MW420955.1 · 115,423–115,668 bp · −
ndhE · MW420955.1 · 115,924–116,229 bp · −
ndhG · MW420955.1 · 116,451–116,981 bp · −
ndhI · MW420955.1 · 117,345–117,845 bp · −
ndhA · MW420955.1 · 117,926–120,032 bp · −
ndhH · MW420955.1 · 120,034–121,215 bp · −
rps15 · MW420955.1 · 121,312–121,584 bp · −
ycf1 · MW420955.1 · 121,799–127,333 bp · −
trnR-ACG · MW420955.1 · 128,291–128,364 bp · −
rrn5 · MW420955.1 · 128,599–128,719 bp · −
rrn4.5 · MW420955.1 · 128,967–129,069 bp · −
rrn23 · MW420955.1 · 129,168–131,979 bp · −
trnA-UGC · MW420955.1 · 132,154–133,042 bp · −
trnI-GAU · MW420955.1 · 133,108–134,126 bp · −
rrn16 · MW420955.1 · 134,425–135,915 bp · −
trnV-GAC · MW420955.1 · 136,142–136,213 bp · −
ycf15 · MW420955.1 · 142,465–142,662 bp · −
ycf2 · MW420955.1 · 142,804–149,613 bp · −
psbK · MW420955.1 · 7,819–8,004 bp · +
psbI · MW420955.1 · 8,407–8,517 bp · +
trnG-CGA · MW420955.1 · 9,347–10,099 bp · +
trnR-UCU · MW420955.1 · 10,274–10,345 bp · +
trnC-GCA · MW420955.1 · 28,493–28,563 bp · +
petN · MW420955.1 · 28,865–28,954 bp · +
trnT-GGU · MW420955.1 · 31,611–31,682 bp · +
psbD · MW420955.1 · 32,998–34,059 bp · +
psbC · MW420955.1 · 34,007–35,428 bp · +
psbZ · MW420955.1 · 36,071–36,259 bp · +
trnG-GCC · MW420955.1 · 36,531–36,601 bp · +
trnS-GGA · MW420955.1 · 45,394–45,480 bp · +
trnL-UAA · MW420955.1 · 47,468–48,045 bp · +
trnF-GAA · MW420955.1 · 48,354–48,426 bp · +
trnM-CAU · MW420955.1 · 52,533–52,605 bp · +
rbcL · MW420955.1 · 55,473–56,915 bp · +
accD · MW420955.1 · 57,638–59,116 bp · +
psaI · MW420955.1 · 59,835–59,945 bp · +
ycf4 · MW420955.1 · 60,379–60,933 bp · +
cemA · MW420955.1 · 61,616–62,275 bp · +
petA · MW420955.1 · 62,477–63,439 bp · +
petL · MW420955.1 · 66,100–66,195 bp · +
petG · MW420955.1 · 66,371–66,484 bp · +
psbJ · MW420955.1 · 67,190–67,324 bp · +
rpl33 · MW420955.1 · 67,801–68,001 bp · +
rps18 · MW420955.1 · 68,176–68,481 bp · +
rps12 · MW420955.1 · 137,785–138,575 bp · +
psbB · MW420955.1 · 72,553–74,079 bp · +
psbT · MW420955.1 · 74,270–74,377 bp · +
psbH · MW420955.1 · 74,673–74,894 bp · +
petB · MW420955.1 · 75,019–76,389 bp · +
petD · MW420955.1 · 76,578–77,774 bp · +
ycf2 · MW420955.1 · 86,170–92,979 bp · +
ycf15 · MW420955.1 · 93,121–93,318 bp · +
trnV-GAC · MW420955.1 · 99,570–99,641 bp · +
rrn16 · MW420955.1 · 99,868–101,358 bp · +
trnI-GAU · MW420955.1 · 101,657–102,675 bp · +
trnA-UGC · MW420955.1 · 102,741–103,629 bp · +
rrn23 · MW420955.1 · 103,804–106,615 bp · +
rrn4.5 · MW420955.1 · 106,714–106,816 bp · +
rrn5 · MW420955.1 · 107,064–107,184 bp · +
trnR-ACG · MW420955.1 · 107,419–107,492 bp · +
trnN-GUU · MW420955.1 · 108,049–108,120 bp · +
rpl32 · MW420955.1 · 111,950–112,126 bp · +
trnL-UAG · MW420955.1 · 112,412–112,491 bp · +
ccsA · MW420955.1 · 112,584–113,558 bp · +
trnN-GUU · MW420955.1 · 127,663–127,734 bp · +
rps7 · MW420955.1 · 138,629–139,096 bp · +
ndhB · MW420955.1 · 139,371–141,582 bp · +
trnL-CAA · MW420955.1 · 142,125–142,205 bp · +
trnI-CAU · MW420955.1 · 149,702–149,775 bp · +
rpl23 · MW420955.1 · 149,935–150,216 bp · +
rpl2 · MW420955.1 · 150,235–151,716 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria orthocalyx
ANNOTATED PLASTOME
MW420955.1
151,827 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37957 75914 113870 151827 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1682 4247 2566 Locate
matK gene − 1967 3496 1530 Locate
rps16 gene − 5128 6300 1173 Locate
trnQ-UUC gene − 7426 7497 72 Locate
psbK gene + 7819 8004 186 Locate
psbI gene + 8407 8517 111 Locate
trnS-GCU gene − 8631 8718 88 Locate
trnG-CGA gene + 9347 10099 753 Locate
trnR-UCU gene + 10274 10345 72 Locate
atpA gene − 10442 11965 1524 Locate
atpF gene − 12055 13294 1240 Locate
atpH gene − 13657 13902 246 Locate
atpI gene − 14879 15622 744 Locate
rps2 gene − 15967 16677 711 Locate
rpoC2 gene − 16891 21096 4206 Locate
rpoC1 gene − 21251 24092 2842 Locate
rpoB gene − 24119 27331 3213 Locate
trnC-GCA gene + 28493 28563 71 Locate
petN gene + 28865 28954 90 Locate
psbM gene − 30004 30108 105 Locate
trnD-GUC gene − 30635 30708 74 Locate
trnY-GUA gene − 30827 30910 84 Locate
trnE-UUC gene − 30970 31042 73 Locate
trnT-GGU gene + 31611 31682 72 Locate
psbD gene + 32998 34059 1062 Locate
psbC gene + 34007 35428 1422 Locate
trnS-UCA gene − 35662 35754 93 Locate
psbZ gene + 36071 36259 189 Locate
trnG-GCC gene + 36531 36601 71 Locate
trnfM-CAU gene − 36749 36822 74 Locate
rps14 gene − 36972 37274 303 Locate
psaB gene − 37402 39606 2205 Locate
psaA gene − 39632 41884 2253 Locate
ycf3 gene − 42573 44496 1924 Locate
trnS-GGA gene + 45394 45480 87 Locate
rps4 gene − 45762 46367 606 Locate
trnT-UGU gene − 46705 46777 73 Locate
trnL-UAA gene + 47468 48045 578 Locate
trnF-GAA gene + 48354 48426 73 Locate
ndhJ gene − 49073 49549 477 Locate
ndhK gene − 49658 50335 678 Locate
ndhC gene − 50388 50750 363 Locate
trnV-UAC gene − 51692 52344 653 Locate
trnM-CAU gene + 52533 52605 73 Locate
atpE gene − 52814 53215 402 Locate
atpB gene − 53212 54708 1497 Locate
rbcL gene + 55473 56915 1443 Locate
accD gene + 57638 59116 1479 Locate
psaI gene + 59835 59945 111 Locate
ycf4 gene + 60379 60933 555 Locate
cemA gene + 61616 62275 660 Locate
petA gene + 62477 63439 963 Locate
pabJ gene − 64450 64572 123 Locate
psbL gene − 64706 64822 117 Locate
psbF gene − 64846 64965 120 Locate
psbE gene − 64980 65231 252 Locate
petL gene + 66100 66195 96 Locate
petG gene + 66371 66484 114 Locate
trnW-CCA gene − 66603 66676 74 Locate
trnP-UGG gene − 66846 66919 74 Locate
psbJ gene + 67190 67324 135 Locate
rpl33 gene + 67801 68001 201 Locate
rps18 gene + 68176 68481 306 Locate
rpl20 gene − 68716 69102 387 Locate
rps12 gene − 69887 70012 126 Locate
clpP gene − 70155 72095 1941 Locate
psbB gene + 72553 74079 1527 Locate
psbT gene + 74270 74377 108 Locate
psbN gene − 74438 74569 132 Locate
psbH gene + 74673 74894 222 Locate
petB gene + 75019 76389 1371 Locate
petD gene + 76578 77774 1197 Locate
rpoA gene − 77937 78950 1014 Locate
rps11 gene − 79022 79438 417 Locate
rpl36 gene − 79540 79653 114 Locate
infA gene − 79748 79981 234 Locate
rps8 gene − 80104 80514 411 Locate
rpl14 gene − 80671 81039 369 Locate
rpl16 gene − 81166 82398 1233 Locate
rps3 gene − 82554 83216 663 Locate
rpl22 gene − 83218 83673 456 Locate
rps19 gene − 83733 84011 279 Locate
rpl2 gene − 84067 85548 1482 Locate
rpl23 gene − 85567 85848 282 Locate
trnI-CAU gene − 86008 86081 74 Locate
ycf2 gene + 86170 92979 6810 Locate
ycf15 gene + 93121 93318 198 Locate
trnL-CAA gene − 93578 93658 81 Locate
ndhB gene − 94201 96412 2212 Locate
rps7 gene − 96687 97154 468 Locate
rps12 gene − 97208 97998 791 Locate
trnV-GAC gene + 99570 99641 72 Locate
rrn16 gene + 99868 101358 1491 Locate
trnI-GAU gene + 101657 102675 1019 Locate
trnA-UGC gene + 102741 103629 889 Locate
rrn23 gene + 103804 106615 2812 Locate
rrn4.5 gene + 106714 106816 103 Locate
rrn5 gene + 107064 107184 121 Locate
trnR-ACG gene + 107419 107492 74 Locate
trnN-GUU gene + 108049 108120 72 Locate
ndhF gene − 109197 111437 2241 Locate
rpl32 gene + 111950 112126 177 Locate
trnL-UAG gene + 112412 112491 80 Locate
ccsA gene + 112584 113558 975 Locate
ndhD gene − 113792 115321 1530 Locate
psaC gene − 115423 115668 246 Locate
ndhE gene − 115924 116229 306 Locate
ndhG gene − 116451 116981 531 Locate
ndhI gene − 117345 117845 501 Locate
ndhA gene − 117926 120032 2107 Locate
ndhH gene − 120034 121215 1182 Locate
rps15 gene − 121312 121584 273 Locate
ycf1 gene − 121799 127333 5535 Locate
trnN-GUU gene + 127663 127734 72 Locate
trnR-ACG gene − 128291 128364 74 Locate
rrn5 gene − 128599 128719 121 Locate
rrn4.5 gene − 128967 129069 103 Locate
rrn23 gene − 129168 131979 2812 Locate
trnA-UGC gene − 132154 133042 889 Locate
trnI-GAU gene − 133108 134126 1019 Locate
rrn16 gene − 134425 135915 1491 Locate
trnV-GAC gene − 136142 136213 72 Locate
rps12 gene + 137785 138575 791 Locate
rps7 gene + 138629 139096 468 Locate
ndhB gene + 139371 141582 2212 Locate
trnL-CAA gene + 142125 142205 81 Locate
ycf15 gene − 142465 142662 198 Locate
ycf2 gene − 142804 149613 6810 Locate
trnI-CAU gene + 149702 149775 74 Locate
rpl23 gene + 149935 150216 282 Locate
rpl2 gene + 150235 151716 1482 Locate
Status Available
Accession MW420955.1
Length 151,827 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources