Coordinate-aware organelle record

Scutellaria orthocalyx chloroplast genome

Available MW420955.1 151,827 bp 132 coordinate-linked features

Gene-position browser

Map and table selections are linked. Coordinates use the source accession coordinate system.

132 features

Gene	Type	Group	Strand	Start	End	Length
trnH-GUG	gene	translation-rna	−	1	75	74
psbA	gene	photosystem-ii	−	377	1436	1059
trnK-UUU	gene	translation-rna	−	1681	4247	2566
matK	gene	other	−	1966	3496	1530
rps16	gene	ribosomal-protein	−	5127	6300	1173
trnQ-UUC	gene	translation-rna	−	7425	7497	72
psbK	gene	photosystem-ii	+	7818	8004	186
psbI	gene	photosystem-ii	+	8406	8517	111
trnS-GCU	gene	translation-rna	−	8630	8718	88
trnG-CGA	gene	translation-rna	+	9346	10099	753
trnR-UCU	gene	translation-rna	+	10273	10345	72
atpA	gene	atp-synthase	−	10441	11965	1524
atpF	gene	atp-synthase	−	12054	13294	1240
atpH	gene	atp-synthase	−	13656	13902	246
atpI	gene	atp-synthase	−	14878	15622	744
rps2	gene	ribosomal-protein	−	15966	16677	711
rpoC2	gene	rna-polymerase	−	16890	21096	4206
rpoC1	gene	rna-polymerase	−	21250	24092	2842
rpoB	gene	rna-polymerase	−	24118	27331	3213
trnC-GCA	gene	translation-rna	+	28492	28563	71
petN	gene	cytochrome	+	28864	28954	90
psbM	gene	photosystem-ii	−	30003	30108	105
trnD-GUC	gene	translation-rna	−	30634	30708	74
trnY-GUA	gene	translation-rna	−	30826	30910	84
trnE-UUC	gene	translation-rna	−	30969	31042	73
trnT-GGU	gene	translation-rna	+	31610	31682	72
psbD	gene	photosystem-ii	+	32997	34059	1062
psbC	gene	photosystem-ii	+	34006	35428	1422
trnS-UCA	gene	translation-rna	−	35661	35754	93
psbZ	gene	photosystem-ii	+	36070	36259	189
trnG-GCC	gene	translation-rna	+	36530	36601	71
trnfM-CAU	gene	translation-rna	−	36748	36822	74
rps14	gene	ribosomal-protein	−	36971	37274	303
psaB	gene	photosystem-i	−	37401	39606	2205
psaA	gene	photosystem-i	−	39631	41884	2253
ycf3	gene	other	−	42572	44496	1924
trnS-GGA	gene	translation-rna	+	45393	45480	87
rps4	gene	ribosomal-protein	−	45761	46367	606
trnT-UGU	gene	translation-rna	−	46704	46777	73
trnL-UAA	gene	translation-rna	+	47467	48045	578
trnF-GAA	gene	translation-rna	+	48353	48426	73
ndhJ	gene	nad-dehydrogenase	−	49072	49549	477
ndhK	gene	nad-dehydrogenase	−	49657	50335	678
ndhC	gene	nad-dehydrogenase	−	50387	50750	363
trnV-UAC	gene	translation-rna	−	51691	52344	653
trnM-CAU	gene	translation-rna	+	52532	52605	73
atpE	gene	atp-synthase	−	52813	53215	402
atpB	gene	atp-synthase	−	53211	54708	1497
rbcL	gene	other	+	55472	56915	1443
accD	gene	other	+	57637	59116	1479
psaI	gene	photosystem-i	+	59834	59945	111
ycf4	gene	other	+	60378	60933	555
cemA	gene	other	+	61615	62275	660
petA	gene	cytochrome	+	62476	63439	963
pabJ	gene	other	−	64449	64572	123
psbL	gene	photosystem-ii	−	64705	64822	117
psbF	gene	photosystem-ii	−	64845	64965	120
psbE	gene	photosystem-ii	−	64979	65231	252
petL	gene	cytochrome	+	66099	66195	96
petG	gene	cytochrome	+	66370	66484	114
trnW-CCA	gene	translation-rna	−	66602	66676	74
trnP-UGG	gene	translation-rna	−	66845	66919	74
psbJ	gene	photosystem-ii	+	67189	67324	135
rpl33	gene	ribosomal-protein	+	67800	68001	201
rps18	gene	ribosomal-protein	+	68175	68481	306
rpl20	gene	ribosomal-protein	−	68715	69102	387
rps12	gene	ribosomal-protein	−	69886	97998	28112
rps12	gene	ribosomal-protein	+	69886	138575	68689
clpP	gene	other	−	70154	72095	1941
psbB	gene	photosystem-ii	+	72552	74079	1527
psbT	gene	photosystem-ii	+	74269	74377	108
psbN	gene	photosystem-ii	−	74437	74569	132
psbH	gene	photosystem-ii	+	74672	74894	222
petB	gene	cytochrome	+	75018	76389	1371
petD	gene	cytochrome	+	76577	77774	1197
rpoA	gene	rna-polymerase	−	77936	78950	1014
rps11	gene	ribosomal-protein	−	79021	79438	417
rpl36	gene	ribosomal-protein	−	79539	79653	114
infA	gene	other	−	79747	79981	234
rps8	gene	ribosomal-protein	−	80103	80514	411
rpl14	gene	ribosomal-protein	−	80670	81039	369
rpl16	gene	ribosomal-protein	−	81165	82398	1233
rps3	gene	ribosomal-protein	−	82553	83216	663
rpl22	gene	ribosomal-protein	−	83217	83673	456
rps19	gene	ribosomal-protein	−	83732	84011	279
rpl2	gene	ribosomal-protein	−	84066	85548	1482
rpl23	gene	ribosomal-protein	−	85566	85848	282
trnI-CAU	gene	translation-rna	−	86007	86081	74
ycf2	gene	other	+	86169	92979	6810
ycf15	gene	other	+	93120	93318	198
trnL-CAA	gene	translation-rna	−	93577	93658	81
ndhB	gene	nad-dehydrogenase	−	94200	96412	2212
rps7	gene	ribosomal-protein	−	96686	97154	468
trnV-GAC	gene	translation-rna	+	99569	99641	72
rrn16	gene	ribosomal-rna	+	99867	101358	1491
trnI-GAU	gene	translation-rna	+	101656	102675	1019
trnA-UGC	gene	translation-rna	+	102740	103629	889
rrn23	gene	ribosomal-rna	+	103803	106615	2812
rrn4.5	gene	ribosomal-rna	+	106713	106816	103
rrn5	gene	ribosomal-rna	+	107063	107184	121
trnR-ACG	gene	translation-rna	+	107418	107492	74
trnN-GUU	gene	translation-rna	+	108048	108120	72
ndhF	gene	nad-dehydrogenase	−	109196	111437	2241
rpl32	gene	ribosomal-protein	+	111949	112126	177
trnL-UAG	gene	translation-rna	+	112411	112491	80
ccsA	gene	other	+	112583	113558	975
ndhD	gene	nad-dehydrogenase	−	113791	115321	1530
psaC	gene	photosystem-i	−	115422	115668	246
ndhE	gene	nad-dehydrogenase	−	115923	116229	306
ndhG	gene	nad-dehydrogenase	−	116450	116981	531
ndhI	gene	nad-dehydrogenase	−	117344	117845	501
ndhA	gene	nad-dehydrogenase	−	117925	120032	2107
ndhH	gene	nad-dehydrogenase	−	120033	121215	1182
rps15	gene	ribosomal-protein	−	121311	121584	273
ycf1	gene	other	−	121798	127333	5535
trnN-GUU	gene	translation-rna	+	127662	127734	72
trnR-ACG	gene	translation-rna	−	128290	128364	74
rrn5	gene	ribosomal-rna	−	128598	128719	121
rrn4.5	gene	ribosomal-rna	−	128966	129069	103
rrn23	gene	ribosomal-rna	−	129167	131979	2812
trnA-UGC	gene	translation-rna	−	132153	133042	889
trnI-GAU	gene	translation-rna	−	133107	134126	1019
rrn16	gene	ribosomal-rna	−	134424	135915	1491
trnV-GAC	gene	translation-rna	−	136141	136213	72
rps7	gene	ribosomal-protein	+	138628	139096	468
ndhB	gene	nad-dehydrogenase	+	139370	141582	2212
trnL-CAA	gene	translation-rna	+	142124	142205	81
ycf15	gene	other	−	142464	142662	198
ycf2	gene	other	−	142803	149613	6810
trnI-CAU	gene	translation-rna	+	149701	149775	74
rpl23	gene	ribosomal-protein	+	149934	150216	282
rpl2	gene	ribosomal-protein	+	150234	151716	1482

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources

Chloroplast genomeMW420955.1DNA · accDMW420955DNA · atpBMW420955DNA · matKMW420955DNA · ndhFMW420955DNA · psbAMW420955DNA · rbcLMW420955DNA · rps12MW420955DNA · ycf1MW420955