Scutellaria ossethica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059233.1 · 4–77 bp · −
psbA · PQ059233.1 · 378–1,436 bp · −
trnK-UUU · PQ059233.1 · 1,678–4,265 bp · −
matK · PQ059233.1 · 1,968–3,494 bp · −
rps16 · PQ059233.1 · 5,164–6,320 bp · −
trnQ-UUG · PQ059233.1 · 7,426–7,497 bp · −
trnS-GCU · PQ059233.1 · 8,614–8,701 bp · −
atpA · PQ059233.1 · 10,503–12,026 bp · −
atpF · PQ059233.1 · 12,108–13,337 bp · −
atpH · PQ059233.1 · 13,698–13,943 bp · −
atpI · PQ059233.1 · 14,929–15,672 bp · −
rps2 · PQ059233.1 · 16,010–16,720 bp · −
rpoC2 · PQ059233.1 · 16,934–21,139 bp · −
rpoC1 · PQ059233.1 · 21,294–24,128 bp · −
rpoB · PQ059233.1 · 24,155–27,367 bp · −
psbM · PQ059233.1 · 30,376–30,480 bp · −
trnD-GUC · PQ059233.1 · 30,998–31,071 bp · −
trnY-GUA · PQ059233.1 · 31,185–31,268 bp · −
trnE-UUC · PQ059233.1 · 31,328–31,400 bp · −
trnS-UGA · PQ059233.1 · 36,017–36,108 bp · −
trnfM-CAU · PQ059233.1 · 37,108–37,181 bp · −
rps14 · PQ059233.1 · 37,336–37,638 bp · −
psaB · PQ059233.1 · 37,769–39,973 bp · −
psaA · PQ059233.1 · 39,999–42,251 bp · −
ycf3 · PQ059233.1 · 42,940–44,862 bp · −
rps4 · PQ059233.1 · 46,114–46,719 bp · −
trnT-UGU · PQ059233.1 · 47,057–47,129 bp · −
ndhJ · PQ059233.1 · 49,390–49,866 bp · −
ndhK · PQ059233.1 · 49,975–50,652 bp · −
ndhC · PQ059233.1 · 50,706–51,068 bp · −
trnV-UAC · PQ059233.1 · 52,046–52,698 bp · −
atpE · PQ059233.1 · 53,153–53,554 bp · −
atpB · PQ059233.1 · 53,551–55,047 bp · −
psbJ · PQ059233.1 · 64,783–64,905 bp · −
psbL · PQ059233.1 · 65,039–65,260 bp · −
psbF · PQ059233.1 · 65,179–65,298 bp · −
psbE · PQ059233.1 · 65,313–65,564 bp · −
trnW-CCA · PQ059233.1 · 66,941–67,014 bp · −
trnP-UGG · PQ059233.1 · 67,184–67,257 bp · −
rpl20 · PQ059233.1 · 69,052–69,438 bp · −
rps12 · PQ059233.1 · 70,227–70,340 bp · −
rps12 · PQ059233.1 · 97,477–98,267 bp · −
clpP · PQ059233.1 · 70,482–72,409 bp · −
psbN · PQ059233.1 · 74,753–74,884 bp · −
rpoA · PQ059233.1 · 78,441–79,241 bp · −
rps11 · PQ059233.1 · 79,313–79,729 bp · −
rpl36 · PQ059233.1 · 79,831–79,944 bp · −
infA · PQ059233.1 · 80,039–80,272 bp · −
rps8 · PQ059233.1 · 80,397–80,807 bp · −
rpl14 · PQ059233.1 · 80,960–81,328 bp · −
rpl16 · PQ059233.1 · 81,455–82,677 bp · −
rps3 · PQ059233.1 · 82,833–83,495 bp · −
rpl22 · PQ059233.1 · 83,497–83,952 bp · −
rps19 · PQ059233.1 · 84,012–84,290 bp · −
rpl2 · PQ059233.1 · 84,344–85,825 bp · −
rpl23 · PQ059233.1 · 85,844–86,125 bp · −
trnI-CAU · PQ059233.1 · 86,285–86,358 bp · −
trnL-CAA · PQ059233.1 · 93,847–93,927 bp · −
ndhB · PQ059233.1 · 94,470–96,681 bp · −
rps7 · PQ059233.1 · 96,956–97,423 bp · −
trnN-GUU · PQ059233.1 · 108,288–108,359 bp · −
ndhF · PQ059233.1 · 109,416–111,677 bp · −
ndhD · PQ059233.1 · 114,029–115,558 bp · −
psaC · PQ059233.1 · 115,661–115,906 bp · −
ndhE · PQ059233.1 · 116,155–116,460 bp · −
ndhG · PQ059233.1 · 116,677–117,207 bp · −
ndhI · PQ059233.1 · 117,573–118,073 bp · −
ndhA · PQ059233.1 · 118,154–120,275 bp · −
ndhH · PQ059233.1 · 120,277–121,458 bp · −
rps15 · PQ059233.1 · 121,555–121,827 bp · −
ycf1 · PQ059233.1 · 122,023–127,659 bp · −
trnR-ACG · PQ059233.1 · 128,498–128,571 bp · −
rrn5 · PQ059233.1 · 128,806–128,926 bp · −
rrn4.5 · PQ059233.1 · 129,167–129,269 bp · −
rrn23 · PQ059233.1 · 129,368–132,179 bp · −
trnA-UGC · PQ059233.1 · 132,342–133,226 bp · −
trnI-GAU · PQ059233.1 · 133,291–134,311 bp · −
ycf68 · PQ059233.1 · 133,863–134,156 bp · −
rrn16 · PQ059233.1 · 134,610–136,100 bp · −
trnV-GAC · PQ059233.1 · 136,327–136,398 bp · −
ycf15 · PQ059233.1 · 142,650–142,847 bp · −
ycf2 · PQ059233.1 · 142,981–149,790 bp · −
psbK · PQ059233.1 · 7,822–8,007 bp · +
psbI · PQ059233.1 · 8,385–8,495 bp · +
trnG-UCC · PQ059233.1 · 9,403–10,160 bp · +
trnR-UCU · PQ059233.1 · 10,335–10,406 bp · +
trnC-GCA · PQ059233.1 · 28,528–28,598 bp · +
petN · PQ059233.1 · 29,306–29,395 bp · +
trnT-GGU · PQ059233.1 · 31,976–32,047 bp · +
psbD · PQ059233.1 · 33,351–34,412 bp · +
psbC · PQ059233.1 · 34,360–35,781 bp · +
psbZ · PQ059233.1 · 36,424–36,612 bp · +
trnG-GCC · PQ059233.1 · 36,891–36,961 bp · +
trnS-GGA · PQ059233.1 · 45,752–45,838 bp · +
trnL-UAA · PQ059233.1 · 47,814–48,373 bp · +
trnF-GAA · PQ059233.1 · 48,680–48,752 bp · +
trnM-CAU · PQ059233.1 · 52,887–52,959 bp · +
rbcL · PQ059233.1 · 55,799–57,262 bp · +
accD · PQ059233.1 · 57,976–59,454 bp · +
psaI · PQ059233.1 · 60,162–60,272 bp · +
ycf4 · PQ059233.1 · 60,706–61,260 bp · +
cemA · PQ059233.1 · 62,009–62,608 bp · +
petA · PQ059233.1 · 62,815–63,777 bp · +
petL · PQ059233.1 · 66,439–66,534 bp · +
petG · PQ059233.1 · 66,709–66,822 bp · +
psaJ · PQ059233.1 · 67,466–67,669 bp · +
rpl33 · PQ059233.1 · 68,137–68,337 bp · +
rps18 · PQ059233.1 · 68,512–68,817 bp · +
rps12 · PQ059233.1 · 137,970–138,760 bp · +
psbB · PQ059233.1 · 72,868–74,394 bp · +
psbT · PQ059233.1 · 74,585–74,692 bp · +
psbH · PQ059233.1 · 74,988–75,209 bp · +
petB · PQ059233.1 · 75,334–76,703 bp · +
petD · PQ059233.1 · 76,881–78,086 bp · +
ycf2 · PQ059233.1 · 86,447–93,256 bp · +
ycf15 · PQ059233.1 · 93,390–93,587 bp · +
trnV-GAC · PQ059233.1 · 99,839–99,910 bp · +
rrn16 · PQ059233.1 · 100,137–101,627 bp · +
trnI-GAU · PQ059233.1 · 101,926–102,946 bp · +
trnA-UGC · PQ059233.1 · 103,011–103,895 bp · +
rrn23 · PQ059233.1 · 104,058–106,869 bp · +
rrn4.5 · PQ059233.1 · 106,968–107,070 bp · +
rrn5 · PQ059233.1 · 107,311–107,431 bp · +
trnR-ACG · PQ059233.1 · 107,666–107,739 bp · +
rpl32 · PQ059233.1 · 112,005–112,181 bp · +
trnL-UAG · PQ059233.1 · 112,631–112,710 bp · +
ccsA · PQ059233.1 · 112,799–113,773 bp · +
trnN-GUU · PQ059233.1 · 127,878–127,949 bp · +
rps7 · PQ059233.1 · 138,814–139,281 bp · +
ndhB · PQ059233.1 · 139,556–141,767 bp · +
trnL-CAA · PQ059233.1 · 142,310–142,390 bp · +
trnI-CAU · PQ059233.1 · 149,879–149,952 bp · +
rpl23 · PQ059233.1 · 150,112–150,393 bp · +
rpl2 · PQ059233.1 · 150,412–151,893 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria ossethica
ANNOTATED PLASTOME
PQ059233.1
151,992 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37998 75996 113994 151992 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1678 4265 2588 Locate
matK gene − 1968 3494 1527 Locate
rps16 gene − 5164 6320 1157 Locate
trnQ-UUG gene − 7426 7497 72 Locate
psbK gene + 7822 8007 186 Locate
psbI gene + 8385 8495 111 Locate
trnS-GCU gene − 8614 8701 88 Locate
trnG-UCC gene + 9403 10160 758 Locate
trnR-UCU gene + 10335 10406 72 Locate
atpA gene − 10503 12026 1524 Locate
atpF gene − 12108 13337 1230 Locate
atpH gene − 13698 13943 246 Locate
atpI gene − 14929 15672 744 Locate
rps2 gene − 16010 16720 711 Locate
rpoC2 gene − 16934 21139 4206 Locate
rpoC1 gene − 21294 24128 2835 Locate
rpoB gene − 24155 27367 3213 Locate
trnC-GCA gene + 28528 28598 71 Locate
petN gene + 29306 29395 90 Locate
psbM gene − 30376 30480 105 Locate
trnD-GUC gene − 30998 31071 74 Locate
trnY-GUA gene − 31185 31268 84 Locate
trnE-UUC gene − 31328 31400 73 Locate
trnT-GGU gene + 31976 32047 72 Locate
psbD gene + 33351 34412 1062 Locate
psbC gene + 34360 35781 1422 Locate
trnS-UGA gene − 36017 36108 92 Locate
psbZ gene + 36424 36612 189 Locate
trnG-GCC gene + 36891 36961 71 Locate
trnfM-CAU gene − 37108 37181 74 Locate
rps14 gene − 37336 37638 303 Locate
psaB gene − 37769 39973 2205 Locate
psaA gene − 39999 42251 2253 Locate
ycf3 gene − 42940 44862 1923 Locate
trnS-GGA gene + 45752 45838 87 Locate
rps4 gene − 46114 46719 606 Locate
trnT-UGU gene − 47057 47129 73 Locate
trnL-UAA gene + 47814 48373 560 Locate
trnF-GAA gene + 48680 48752 73 Locate
ndhJ gene − 49390 49866 477 Locate
ndhK gene − 49975 50652 678 Locate
ndhC gene − 50706 51068 363 Locate
trnV-UAC gene − 52046 52698 653 Locate
trnM-CAU gene + 52887 52959 73 Locate
atpE gene − 53153 53554 402 Locate
atpB gene − 53551 55047 1497 Locate
rbcL gene + 55799 57262 1464 Locate
accD gene + 57976 59454 1479 Locate
psaI gene + 60162 60272 111 Locate
ycf4 gene + 60706 61260 555 Locate
cemA gene + 62009 62608 600 Locate
petA gene + 62815 63777 963 Locate
psbJ gene − 64783 64905 123 Locate
psbL gene − 65039 65260 222 Locate
psbF gene − 65179 65298 120 Locate
psbE gene − 65313 65564 252 Locate
petL gene + 66439 66534 96 Locate
petG gene + 66709 66822 114 Locate
trnW-CCA gene − 66941 67014 74 Locate
trnP-UGG gene − 67184 67257 74 Locate
psaJ gene + 67466 67669 204 Locate
rpl33 gene + 68137 68337 201 Locate
rps18 gene + 68512 68817 306 Locate
rpl20 gene − 69052 69438 387 Locate
rps12 gene − 70227 70340 114 Locate
clpP gene − 70482 72409 1928 Locate
psbB gene + 72868 74394 1527 Locate
psbT gene + 74585 74692 108 Locate
psbN gene − 74753 74884 132 Locate
psbH gene + 74988 75209 222 Locate
petB gene + 75334 76703 1370 Locate
petD gene + 76881 78086 1206 Locate
rpoA gene − 78441 79241 801 Locate
rps11 gene − 79313 79729 417 Locate
rpl36 gene − 79831 79944 114 Locate
infA gene − 80039 80272 234 Locate
rps8 gene − 80397 80807 411 Locate
rpl14 gene − 80960 81328 369 Locate
rpl16 gene − 81455 82677 1223 Locate
rps3 gene − 82833 83495 663 Locate
rpl22 gene − 83497 83952 456 Locate
rps19 gene − 84012 84290 279 Locate
rpl2 gene − 84344 85825 1482 Locate
rpl23 gene − 85844 86125 282 Locate
trnI-CAU gene − 86285 86358 74 Locate
ycf2 gene + 86447 93256 6810 Locate
ycf15 gene + 93390 93587 198 Locate
trnL-CAA gene − 93847 93927 81 Locate
ndhB gene − 94470 96681 2212 Locate
rps7 gene − 96956 97423 468 Locate
rps12 gene − 97477 98267 791 Locate
trnV-GAC gene + 99839 99910 72 Locate
rrn16 gene + 100137 101627 1491 Locate
trnI-GAU gene + 101926 102946 1021 Locate
trnA-UGC gene + 103011 103895 885 Locate
rrn23 gene + 104058 106869 2812 Locate
rrn4.5 gene + 106968 107070 103 Locate
rrn5 gene + 107311 107431 121 Locate
trnR-ACG gene + 107666 107739 74 Locate
trnN-GUU gene − 108288 108359 72 Locate
ndhF gene − 109416 111677 2262 Locate
rpl32 gene + 112005 112181 177 Locate
trnL-UAG gene + 112631 112710 80 Locate
ccsA gene + 112799 113773 975 Locate
ndhD gene − 114029 115558 1530 Locate
psaC gene − 115661 115906 246 Locate
ndhE gene − 116155 116460 306 Locate
ndhG gene − 116677 117207 531 Locate
ndhI gene − 117573 118073 501 Locate
ndhA gene − 118154 120275 2122 Locate
ndhH gene − 120277 121458 1182 Locate
rps15 gene − 121555 121827 273 Locate
ycf1 gene − 122023 127659 5637 Locate
trnN-GUU gene + 127878 127949 72 Locate
trnR-ACG gene − 128498 128571 74 Locate
rrn5 gene − 128806 128926 121 Locate
rrn4.5 gene − 129167 129269 103 Locate
rrn23 gene − 129368 132179 2812 Locate
trnA-UGC gene − 132342 133226 885 Locate
trnI-GAU gene − 133291 134311 1021 Locate
ycf68 gene − 133863 134156 294 Locate
rrn16 gene − 134610 136100 1491 Locate
trnV-GAC gene − 136327 136398 72 Locate
rps12 gene + 137970 138760 791 Locate
rps7 gene + 138814 139281 468 Locate
ndhB gene + 139556 141767 2212 Locate
trnL-CAA gene + 142310 142390 81 Locate
ycf15 gene − 142650 142847 198 Locate
ycf2 gene − 142981 149790 6810 Locate
trnI-CAU gene + 149879 149952 74 Locate
rpl23 gene + 150112 150393 282 Locate
rpl2 gene + 150412 151893 1482 Locate
Status Available
Accession PQ059233.1
Length 151,992 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources