Scutellaria ovata subsp. ovata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059328.1 · 3–76 bp · −
psbA · PQ059328.1 · 370–1,428 bp · −
trnK-UUU · PQ059328.1 · 1,661–4,248 bp · −
matK · PQ059328.1 · 1,956–3,491 bp · −
rps16 · PQ059328.1 · 5,153–6,320 bp · −
trnQ-UUG · PQ059328.1 · 7,451–7,522 bp · −
trnS-GCU · PQ059328.1 · 8,650–8,737 bp · −
atpA · PQ059328.1 · 10,526–12,040 bp · −
atpF · PQ059328.1 · 12,134–13,360 bp · −
atpH · PQ059328.1 · 13,719–13,964 bp · −
atpI · PQ059328.1 · 14,967–15,710 bp · −
rps2 · PQ059328.1 · 16,052–16,888 bp · −
rpoC2 · PQ059328.1 · 16,979–21,184 bp · −
rpoC1 · PQ059328.1 · 21,339–24,199 bp · −
rpoB · PQ059328.1 · 24,226–27,438 bp · −
psbM · PQ059328.1 · 30,489–30,593 bp · −
trnD-GUC · PQ059328.1 · 31,119–31,192 bp · −
trnY-GUA · PQ059328.1 · 31,306–31,389 bp · −
trnE-UUC · PQ059328.1 · 31,449–31,521 bp · −
trnS-UGA · PQ059328.1 · 36,171–36,262 bp · −
trnfM-CAU · PQ059328.1 · 37,266–37,339 bp · −
rps14 · PQ059328.1 · 37,496–37,798 bp · −
psaB · PQ059328.1 · 37,926–40,130 bp · −
psaA · PQ059328.1 · 40,156–42,408 bp · −
ycf3 · PQ059328.1 · 43,082–45,006 bp · −
rps4 · PQ059328.1 · 46,264–46,869 bp · −
trnT-UGU · PQ059328.1 · 47,213–47,285 bp · −
ndhJ · PQ059328.1 · 49,570–50,046 bp · −
ndhK · PQ059328.1 · 50,154–50,831 bp · −
ndhC · PQ059328.1 · 50,884–51,246 bp · −
trnV-UAC · PQ059328.1 · 52,239–52,891 bp · −
atpE · PQ059328.1 · 53,354–53,755 bp · −
atpB · PQ059328.1 · 53,752–55,239 bp · −
psbJ · PQ059328.1 · 64,967–65,089 bp · −
psbL · PQ059328.1 · 65,223–65,339 bp · −
psbF · PQ059328.1 · 65,363–65,482 bp · −
psbE · PQ059328.1 · 65,497–65,748 bp · −
trnW-CCA · PQ059328.1 · 67,160–67,233 bp · −
trnP-UGG · PQ059328.1 · 67,404–67,477 bp · −
rpl20 · PQ059328.1 · 69,273–69,659 bp · −
rps12 · PQ059328.1 · 70,442–70,567 bp · −
rps12 · PQ059328.1 · 97,771–98,561 bp · −
clpP · PQ059328.1 · 70,710–72,644 bp · −
psbN · PQ059328.1 · 74,999–75,130 bp · −
rpoA · PQ059328.1 · 78,491–79,498 bp · −
rps11 · PQ059328.1 · 79,570–79,986 bp · −
rpl36 · PQ059328.1 · 80,088–80,201 bp · −
infA · PQ059328.1 · 80,297–80,530 bp · −
rps8 · PQ059328.1 · 80,650–81,060 bp · −
rpl14 · PQ059328.1 · 81,229–81,597 bp · −
rpl16 · PQ059328.1 · 81,723–82,966 bp · −
rps3 · PQ059328.1 · 83,121–83,783 bp · −
rpl22 · PQ059328.1 · 83,785–84,240 bp · −
rps19 · PQ059328.1 · 84,300–84,578 bp · −
rpl2 · PQ059328.1 · 84,633–86,115 bp · −
rpl23 · PQ059328.1 · 86,134–86,415 bp · −
trnI-CAU · PQ059328.1 · 86,575–86,648 bp · −
trnL-CAA · PQ059328.1 · 94,141–94,221 bp · −
ndhB · PQ059328.1 · 94,764–96,921 bp · −
rps7 · PQ059328.1 · 97,250–97,717 bp · −
trnN-GUU · PQ059328.1 · 108,591–108,662 bp · −
ndhF · PQ059328.1 · 109,739–111,979 bp · −
ndhD · PQ059328.1 · 114,491–116,014 bp · −
psaC · PQ059328.1 · 116,113–116,358 bp · −
ndhE · PQ059328.1 · 116,615–116,920 bp · −
ndhG · PQ059328.1 · 117,141–117,671 bp · −
ndhI · PQ059328.1 · 118,036–118,536 bp · −
ndhA · PQ059328.1 · 118,617–120,703 bp · −
ndhH · PQ059328.1 · 120,705–121,886 bp · −
rps15 · PQ059328.1 · 121,989–122,261 bp · −
ycf1 · PQ059328.1 · 122,530–128,184 bp · −
trnR-ACG · PQ059328.1 · 129,021–129,094 bp · −
rrn5 · PQ059328.1 · 129,329–129,449 bp · −
rrn4.5 · PQ059328.1 · 129,697–129,799 bp · −
rrn23 · PQ059328.1 · 129,898–132,710 bp · −
trnA-UGC · PQ059328.1 · 132,873–133,753 bp · −
trnI-GAU · PQ059328.1 · 133,818–134,838 bp · −
ycf68 · PQ059328.1 · 134,444–134,683 bp · −
rrn16 · PQ059328.1 · 135,137–136,627 bp · −
trnV-GAC · PQ059328.1 · 136,855–136,926 bp · −
ycf15 · PQ059328.1 · 143,180–143,428 bp · −
ycf2 · PQ059328.1 · 143,519–150,328 bp · −
psbK · PQ059328.1 · 7,847–8,032 bp · +
psbI · PQ059328.1 · 8,423–8,533 bp · +
trnG-UCC · PQ059328.1 · 9,423–10,183 bp · +
trnR-UCU · PQ059328.1 · 10,358–10,429 bp · +
trnC-GCA · PQ059328.1 · 28,613–28,683 bp · +
petN · PQ059328.1 · 29,397–29,486 bp · +
trnT-GGU · PQ059328.1 · 32,104–32,175 bp · +
psbD · PQ059328.1 · 33,485–34,546 bp · +
psbC · PQ059328.1 · 34,494–35,915 bp · +
psbZ · PQ059328.1 · 36,583–36,771 bp · +
trnG-GCC · PQ059328.1 · 37,043–37,113 bp · +
trnS-GGA · PQ059328.1 · 45,892–45,978 bp · +
trnL-UAA · PQ059328.1 · 47,974–48,543 bp · +
trnF-GAA · PQ059328.1 · 48,849–48,921 bp · +
trnM-CAU · PQ059328.1 · 53,072–53,144 bp · +
rbcL · PQ059328.1 · 55,991–57,454 bp · +
accD · PQ059328.1 · 58,176–59,642 bp · +
psaI · PQ059328.1 · 60,359–60,469 bp · +
ycf4 · PQ059328.1 · 60,903–61,457 bp · +
cemA · PQ059328.1 · 62,199–62,798 bp · +
petA · PQ059328.1 · 63,005–63,967 bp · +
petL · PQ059328.1 · 66,657–66,752 bp · +
petG · PQ059328.1 · 66,928–67,041 bp · +
psaJ · PQ059328.1 · 67,750–67,884 bp · +
rpl33 · PQ059328.1 · 68,357–68,557 bp · +
rps18 · PQ059328.1 · 68,732–69,037 bp · +
rps12 · PQ059328.1 · 138,504–139,294 bp · +
psbB · PQ059328.1 · 73,106–74,632 bp · +
psbT · PQ059328.1 · 74,824–74,925 bp · +
psbH · PQ059328.1 · 75,234–75,455 bp · +
petB · PQ059328.1 · 75,580–76,948 bp · +
petD · PQ059328.1 · 77,137–78,328 bp · +
ycf2 · PQ059328.1 · 86,737–93,546 bp · +
ycf15 · PQ059328.1 · 93,637–93,885 bp · +
trnV-GAC · PQ059328.1 · 100,139–100,210 bp · +
rrn16 · PQ059328.1 · 100,438–101,928 bp · +
trnI-GAU · PQ059328.1 · 102,227–103,247 bp · +
trnA-UGC · PQ059328.1 · 103,312–104,192 bp · +
rrn23 · PQ059328.1 · 104,355–107,167 bp · +
rrn4.5 · PQ059328.1 · 107,266–107,368 bp · +
rrn5 · PQ059328.1 · 107,616–107,736 bp · +
trnR-ACG · PQ059328.1 · 107,971–108,044 bp · +
rpl32 · PQ059328.1 · 112,501–112,677 bp · +
trnL-UAG · PQ059328.1 · 113,107–113,186 bp · +
ccsA · PQ059328.1 · 113,284–114,258 bp · +
trnN-GUU · PQ059328.1 · 128,403–128,474 bp · +
rps7 · PQ059328.1 · 139,348–139,815 bp · +
ndhB · PQ059328.1 · 140,144–142,301 bp · +
trnL-CAA · PQ059328.1 · 142,844–142,924 bp · +
trnI-CAU · PQ059328.1 · 150,417–150,490 bp · +
rpl23 · PQ059328.1 · 150,650–150,931 bp · +
rpl2 · PQ059328.1 · 150,950–152,432 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria ovata subsp. ovata
ANNOTATED PLASTOME
PQ059328.1
152,527 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38132 76264 114395 152527 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 370 1428 1059 Locate
trnK-UUU gene − 1661 4248 2588 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5153 6320 1168 Locate
trnQ-UUG gene − 7451 7522 72 Locate
psbK gene + 7847 8032 186 Locate
psbI gene + 8423 8533 111 Locate
trnS-GCU gene − 8650 8737 88 Locate
trnG-UCC gene + 9423 10183 761 Locate
trnR-UCU gene + 10358 10429 72 Locate
atpA gene − 10526 12040 1515 Locate
atpF gene − 12134 13360 1227 Locate
atpH gene − 13719 13964 246 Locate
atpI gene − 14967 15710 744 Locate
rps2 gene − 16052 16888 837 Locate
rpoC2 gene − 16979 21184 4206 Locate
rpoC1 gene − 21339 24199 2861 Locate
rpoB gene − 24226 27438 3213 Locate
trnC-GCA gene + 28613 28683 71 Locate
petN gene + 29397 29486 90 Locate
psbM gene − 30489 30593 105 Locate
trnD-GUC gene − 31119 31192 74 Locate
trnY-GUA gene − 31306 31389 84 Locate
trnE-UUC gene − 31449 31521 73 Locate
trnT-GGU gene + 32104 32175 72 Locate
psbD gene + 33485 34546 1062 Locate
psbC gene + 34494 35915 1422 Locate
trnS-UGA gene − 36171 36262 92 Locate
psbZ gene + 36583 36771 189 Locate
trnG-GCC gene + 37043 37113 71 Locate
trnfM-CAU gene − 37266 37339 74 Locate
rps14 gene − 37496 37798 303 Locate
psaB gene − 37926 40130 2205 Locate
psaA gene − 40156 42408 2253 Locate
ycf3 gene − 43082 45006 1925 Locate
trnS-GGA gene + 45892 45978 87 Locate
rps4 gene − 46264 46869 606 Locate
trnT-UGU gene − 47213 47285 73 Locate
trnL-UAA gene + 47974 48543 570 Locate
trnF-GAA gene + 48849 48921 73 Locate
ndhJ gene − 49570 50046 477 Locate
ndhK gene − 50154 50831 678 Locate
ndhC gene − 50884 51246 363 Locate
trnV-UAC gene − 52239 52891 653 Locate
trnM-CAU gene + 53072 53144 73 Locate
atpE gene − 53354 53755 402 Locate
atpB gene − 53752 55239 1488 Locate
rbcL gene + 55991 57454 1464 Locate
accD gene + 58176 59642 1467 Locate
psaI gene + 60359 60469 111 Locate
ycf4 gene + 60903 61457 555 Locate
cemA gene + 62199 62798 600 Locate
petA gene + 63005 63967 963 Locate
psbJ gene − 64967 65089 123 Locate
psbL gene − 65223 65339 117 Locate
psbF gene − 65363 65482 120 Locate
psbE gene − 65497 65748 252 Locate
petL gene + 66657 66752 96 Locate
petG gene + 66928 67041 114 Locate
trnW-CCA gene − 67160 67233 74 Locate
trnP-UGG gene − 67404 67477 74 Locate
psaJ gene + 67750 67884 135 Locate
rpl33 gene + 68357 68557 201 Locate
rps18 gene + 68732 69037 306 Locate
rpl20 gene − 69273 69659 387 Locate
rps12 gene − 70442 70567 126 Locate
clpP gene − 70710 72644 1935 Locate
psbB gene + 73106 74632 1527 Locate
psbT gene + 74824 74925 102 Locate
psbN gene − 74999 75130 132 Locate
psbH gene + 75234 75455 222 Locate
petB gene + 75580 76948 1369 Locate
petD gene + 77137 78328 1192 Locate
rpoA gene − 78491 79498 1008 Locate
rps11 gene − 79570 79986 417 Locate
rpl36 gene − 80088 80201 114 Locate
infA gene − 80297 80530 234 Locate
rps8 gene − 80650 81060 411 Locate
rpl14 gene − 81229 81597 369 Locate
rpl16 gene − 81723 82966 1244 Locate
rps3 gene − 83121 83783 663 Locate
rpl22 gene − 83785 84240 456 Locate
rps19 gene − 84300 84578 279 Locate
rpl2 gene − 84633 86115 1483 Locate
rpl23 gene − 86134 86415 282 Locate
trnI-CAU gene − 86575 86648 74 Locate
ycf2 gene + 86737 93546 6810 Locate
ycf15 gene + 93637 93885 249 Locate
trnL-CAA gene − 94141 94221 81 Locate
ndhB gene − 94764 96921 2158 Locate
rps7 gene − 97250 97717 468 Locate
rps12 gene − 97771 98561 791 Locate
trnV-GAC gene + 100139 100210 72 Locate
rrn16 gene + 100438 101928 1491 Locate
trnI-GAU gene + 102227 103247 1021 Locate
trnA-UGC gene + 103312 104192 881 Locate
rrn23 gene + 104355 107167 2813 Locate
rrn4.5 gene + 107266 107368 103 Locate
rrn5 gene + 107616 107736 121 Locate
trnR-ACG gene + 107971 108044 74 Locate
trnN-GUU gene − 108591 108662 72 Locate
ndhF gene − 109739 111979 2241 Locate
rpl32 gene + 112501 112677 177 Locate
trnL-UAG gene + 113107 113186 80 Locate
ccsA gene + 113284 114258 975 Locate
ndhD gene − 114491 116014 1524 Locate
psaC gene − 116113 116358 246 Locate
ndhE gene − 116615 116920 306 Locate
ndhG gene − 117141 117671 531 Locate
ndhI gene − 118036 118536 501 Locate
ndhA gene − 118617 120703 2087 Locate
ndhH gene − 120705 121886 1182 Locate
rps15 gene − 121989 122261 273 Locate
ycf1 gene − 122530 128184 5655 Locate
trnN-GUU gene + 128403 128474 72 Locate
trnR-ACG gene − 129021 129094 74 Locate
rrn5 gene − 129329 129449 121 Locate
rrn4.5 gene − 129697 129799 103 Locate
rrn23 gene − 129898 132710 2813 Locate
trnA-UGC gene − 132873 133753 881 Locate
trnI-GAU gene − 133818 134838 1021 Locate
ycf68 gene − 134444 134683 240 Locate
rrn16 gene − 135137 136627 1491 Locate
trnV-GAC gene − 136855 136926 72 Locate
rps12 gene + 138504 139294 791 Locate
rps7 gene + 139348 139815 468 Locate
ndhB gene + 140144 142301 2158 Locate
trnL-CAA gene + 142844 142924 81 Locate
ycf15 gene − 143180 143428 249 Locate
ycf2 gene − 143519 150328 6810 Locate
trnI-CAU gene + 150417 150490 74 Locate
rpl23 gene + 150650 150931 282 Locate
rpl2 gene + 150950 152432 1483 Locate
Status Available
Accession PQ059328.1
Length 152,527 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources