Scutellaria ovata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420970.1 · 2–75 bp · −
psbA · MW420970.1 · 379–1,437 bp · −
trnK-UUU · MW420970.1 · 1,674–4,260 bp · −
matK · MW420970.1 · 1,971–3,506 bp · −
rps16 · MW420970.1 · 5,166–6,331 bp · −
trnQ-UUC · MW420970.1 · 7,424–7,495 bp · −
trnS-GCU · MW420970.1 · 8,616–8,703 bp · −
atpA · MW420970.1 · 10,487–12,010 bp · −
atpF · MW420970.1 · 12,083–13,316 bp · −
atpH · MW420970.1 · 13,686–13,931 bp · −
atpI · MW420970.1 · 14,921–15,664 bp · −
rps2 · MW420970.1 · 16,004–16,714 bp · −
rpoC2 · MW420970.1 · 16,937–21,130 bp · −
rpoC1 · MW420970.1 · 21,285–24,093 bp · −
rpoB · MW420970.1 · 24,120–27,332 bp · −
psbM · MW420970.1 · 30,352–30,465 bp · −
trnD-GUC · MW420970.1 · 30,995–31,068 bp · −
trnY-GUA · MW420970.1 · 31,187–31,270 bp · −
trnE-UUC · MW420970.1 · 31,330–31,402 bp · −
trnS-UCA · MW420970.1 · 36,020–36,112 bp · −
trnfM-CAU · MW420970.1 · 37,120–37,193 bp · −
rps14 · MW420970.1 · 37,343–37,645 bp · −
psaB · MW420970.1 · 37,773–39,977 bp · −
psaA · MW420970.1 · 40,002–42,254 bp · −
ycf3 · MW420970.1 · 42,950–44,861 bp · −
rps4 · MW420970.1 · 45,572–46,177 bp · −
trnT-UGU · MW420970.1 · 46,516–46,588 bp · −
ndhJ · MW420970.1 · 48,814–49,290 bp · −
ndhK · MW420970.1 · 49,398–50,075 bp · −
ndhC · MW420970.1 · 50,128–50,490 bp · −
trnV-UAC · MW420970.1 · 51,478–52,130 bp · −
atpE · MW420970.1 · 52,594–52,995 bp · −
atpB · MW420970.1 · 52,992–54,488 bp · −
pabJ · MW420970.1 · 64,225–64,347 bp · −
psbL · MW420970.1 · 64,482–64,598 bp · −
psbF · MW420970.1 · 64,622–64,741 bp · −
psbE · MW420970.1 · 64,756–65,007 bp · −
trnW-CCA · MW420970.1 · 66,418–66,491 bp · −
trnP-UGG · MW420970.1 · 66,655–66,728 bp · −
rpl20 · MW420970.1 · 68,518–68,904 bp · −
rps12 · MW420970.1 · 69,689–69,814 bp · −
rps12 · MW420970.1 · 96,998–97,788 bp · −
clpP · MW420970.1 · 69,956–71,885 bp · −
psbN · MW420970.1 · 74,230–74,361 bp · −
rpoA · MW420970.1 · 77,738–78,751 bp · −
rps11 · MW420970.1 · 78,823–79,239 bp · −
rpl36 · MW420970.1 · 79,341–79,454 bp · −
infA · MW420970.1 · 79,550–79,783 bp · −
rps8 · MW420970.1 · 79,904–80,314 bp · −
rpl14 · MW420970.1 · 80,473–80,841 bp · −
rpl16 · MW420970.1 · 80,959–82,202 bp · −
rps3 · MW420970.1 · 82,357–83,019 bp · −
rpl22 · MW420970.1 · 83,021–83,476 bp · −
rps19 · MW420970.1 · 83,541–83,819 bp · −
rpl2 · MW420970.1 · 83,876–85,358 bp · −
rpl23 · MW420970.1 · 85,377–85,658 bp · −
trnI-CAU · MW420970.1 · 85,818–85,891 bp · −
trnL-CAA · MW420970.1 · 93,377–93,457 bp · −
ndhB · MW420970.1 · 94,000–96,202 bp · −
rps7 · MW420970.1 · 96,477–96,944 bp · −
ndhF · MW420970.1 · 108,955–111,195 bp · −
ndhD · MW420970.1 · 113,711–115,231 bp · −
psaC · MW420970.1 · 115,340–115,585 bp · −
ndhE · MW420970.1 · 115,837–116,142 bp · −
ndhG · MW420970.1 · 116,373–116,903 bp · −
ndhI · MW420970.1 · 117,268–117,768 bp · −
ndhA · MW420970.1 · 117,849–119,946 bp · −
ndhH · MW420970.1 · 119,948–121,129 bp · −
rps15 · MW420970.1 · 121,226–121,498 bp · −
ycf1 · MW420970.1 · 121,772–127,207 bp · −
trnR-ACG · MW420970.1 · 128,156–128,229 bp · −
rrn5 · MW420970.1 · 128,454–128,574 bp · −
rrn4.5 · MW420970.1 · 128,822–128,924 bp · −
rrn23 · MW420970.1 · 129,023–131,835 bp · −
trnA-UGC · MW420970.1 · 131,998–132,884 bp · −
trnI-GAU · MW420970.1 · 132,950–133,969 bp · −
rrn16 · MW420970.1 · 134,268–135,758 bp · −
trnV-GAC · MW420970.1 · 135,986–136,057 bp · −
ycf15 · MW420970.1 · 142,299–142,496 bp · −
ycf2 · MW420970.1 · 142,638–149,435 bp · −
psbK · MW420970.1 · 7,828–8,013 bp · +
psbI · MW420970.1 · 8,396–8,506 bp · +
trnG-CGA · MW420970.1 · 9,377–10,138 bp · +
trnR-UCU · MW420970.1 · 10,313–10,384 bp · +
trnC-GCA · MW420970.1 · 28,489–28,559 bp · +
petN · MW420970.1 · 29,271–29,360 bp · +
trnT-GGU · MW420970.1 · 31,986–32,057 bp · +
psbD · MW420970.1 · 33,350–34,411 bp · +
psbC · MW420970.1 · 34,359–35,780 bp · +
psbZ · MW420970.1 · 36,432–36,620 bp · +
trnG-GCC · MW420970.1 · 36,896–36,966 bp · +
trnS-GGA · MW420970.1 · 45,202–45,288 bp · +
trnL-UAA · MW420970.1 · 47,221–47,785 bp · +
trnF-GAA · MW420970.1 · 48,090–48,162 bp · +
trnM-CAU · MW420970.1 · 52,311–52,383 bp · +
rbcL · MW420970.1 · 55,255–56,697 bp · +
accD · MW420970.1 · 57,409–58,887 bp · +
psaI · MW420970.1 · 59,582–59,692 bp · +
ycf4 · MW420970.1 · 60,119–60,673 bp · +
cemA · MW420970.1 · 61,354–62,013 bp · +
petA · MW420970.1 · 62,220–63,182 bp · +
petL · MW420970.1 · 65,915–66,010 bp · +
petG · MW420970.1 · 66,186–66,299 bp · +
psbJ · MW420970.1 · 66,997–67,131 bp · +
rpl33 · MW420970.1 · 67,603–67,803 bp · +
rps18 · MW420970.1 · 67,977–68,282 bp · +
rps12 · MW420970.1 · 137,627–138,417 bp · +
psbB · MW420970.1 · 72,337–73,863 bp · +
psbT · MW420970.1 · 74,055–74,156 bp · +
psbH · MW420970.1 · 74,465–74,686 bp · +
petB · MW420970.1 · 74,811–76,181 bp · +
petD · MW420970.1 · 76,370–77,575 bp · +
ycf2 · MW420970.1 · 85,980–92,777 bp · +
ycf15 · MW420970.1 · 92,919–93,116 bp · +
trnV-GAC · MW420970.1 · 99,358–99,429 bp · +
rrn16 · MW420970.1 · 99,657–101,147 bp · +
trnI-GAU · MW420970.1 · 101,446–102,465 bp · +
trnA-UGC · MW420970.1 · 102,531–103,417 bp · +
rrn23 · MW420970.1 · 103,580–106,392 bp · +
rrn4.5 · MW420970.1 · 106,491–106,593 bp · +
rrn5 · MW420970.1 · 106,841–106,961 bp · +
trnR-ACG · MW420970.1 · 107,186–107,259 bp · +
trnN-GUU · MW420970.1 · 107,807–107,878 bp · +
rpl32 · MW420970.1 · 111,717–111,893 bp · +
trnL-UAG · MW420970.1 · 112,329–112,408 bp · +
ccsA · MW420970.1 · 112,502–113,476 bp · +
trnN-GUU · MW420970.1 · 127,537–127,608 bp · +
rps7 · MW420970.1 · 138,471–138,938 bp · +
ndhB · MW420970.1 · 139,213–141,415 bp · +
trnL-CAA · MW420970.1 · 141,958–142,038 bp · +
trnI-CAU · MW420970.1 · 149,524–149,597 bp · +
rpl23 · MW420970.1 · 149,757–150,038 bp · +
rpl2 · MW420970.1 · 150,057–151,539 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria ovata
ANNOTATED PLASTOME
MW420970.1
151,637 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37909 75818 113728 151637 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1674 4260 2587 Locate
matK gene − 1971 3506 1536 Locate
rps16 gene − 5166 6331 1166 Locate
trnQ-UUC gene − 7424 7495 72 Locate
psbK gene + 7828 8013 186 Locate
psbI gene + 8396 8506 111 Locate
trnS-GCU gene − 8616 8703 88 Locate
trnG-CGA gene + 9377 10138 762 Locate
trnR-UCU gene + 10313 10384 72 Locate
atpA gene − 10487 12010 1524 Locate
atpF gene − 12083 13316 1234 Locate
atpH gene − 13686 13931 246 Locate
atpI gene − 14921 15664 744 Locate
rps2 gene − 16004 16714 711 Locate
rpoC2 gene − 16937 21130 4194 Locate
rpoC1 gene − 21285 24093 2809 Locate
rpoB gene − 24120 27332 3213 Locate
trnC-GCA gene + 28489 28559 71 Locate
petN gene + 29271 29360 90 Locate
psbM gene − 30352 30465 114 Locate
trnD-GUC gene − 30995 31068 74 Locate
trnY-GUA gene − 31187 31270 84 Locate
trnE-UUC gene − 31330 31402 73 Locate
trnT-GGU gene + 31986 32057 72 Locate
psbD gene + 33350 34411 1062 Locate
psbC gene + 34359 35780 1422 Locate
trnS-UCA gene − 36020 36112 93 Locate
psbZ gene + 36432 36620 189 Locate
trnG-GCC gene + 36896 36966 71 Locate
trnfM-CAU gene − 37120 37193 74 Locate
rps14 gene − 37343 37645 303 Locate
psaB gene − 37773 39977 2205 Locate
psaA gene − 40002 42254 2253 Locate
ycf3 gene − 42950 44861 1912 Locate
trnS-GGA gene + 45202 45288 87 Locate
rps4 gene − 45572 46177 606 Locate
trnT-UGU gene − 46516 46588 73 Locate
trnL-UAA gene + 47221 47785 565 Locate
trnF-GAA gene + 48090 48162 73 Locate
ndhJ gene − 48814 49290 477 Locate
ndhK gene − 49398 50075 678 Locate
ndhC gene − 50128 50490 363 Locate
trnV-UAC gene − 51478 52130 653 Locate
trnM-CAU gene + 52311 52383 73 Locate
atpE gene − 52594 52995 402 Locate
atpB gene − 52992 54488 1497 Locate
rbcL gene + 55255 56697 1443 Locate
accD gene + 57409 58887 1479 Locate
psaI gene + 59582 59692 111 Locate
ycf4 gene + 60119 60673 555 Locate
cemA gene + 61354 62013 660 Locate
petA gene + 62220 63182 963 Locate
pabJ gene − 64225 64347 123 Locate
psbL gene − 64482 64598 117 Locate
psbF gene − 64622 64741 120 Locate
psbE gene − 64756 65007 252 Locate
petL gene + 65915 66010 96 Locate
petG gene + 66186 66299 114 Locate
trnW-CCA gene − 66418 66491 74 Locate
trnP-UGG gene − 66655 66728 74 Locate
psbJ gene + 66997 67131 135 Locate
rpl33 gene + 67603 67803 201 Locate
rps18 gene + 67977 68282 306 Locate
rpl20 gene − 68518 68904 387 Locate
rps12 gene − 69689 69814 126 Locate
clpP gene − 69956 71885 1930 Locate
psbB gene + 72337 73863 1527 Locate
psbT gene + 74055 74156 102 Locate
psbN gene − 74230 74361 132 Locate
psbH gene + 74465 74686 222 Locate
petB gene + 74811 76181 1371 Locate
petD gene + 76370 77575 1206 Locate
rpoA gene − 77738 78751 1014 Locate
rps11 gene − 78823 79239 417 Locate
rpl36 gene − 79341 79454 114 Locate
infA gene − 79550 79783 234 Locate
rps8 gene − 79904 80314 411 Locate
rpl14 gene − 80473 80841 369 Locate
rpl16 gene − 80959 82202 1244 Locate
rps3 gene − 82357 83019 663 Locate
rpl22 gene − 83021 83476 456 Locate
rps19 gene − 83541 83819 279 Locate
rpl2 gene − 83876 85358 1483 Locate
rpl23 gene − 85377 85658 282 Locate
trnI-CAU gene − 85818 85891 74 Locate
ycf2 gene + 85980 92777 6798 Locate
ycf15 gene + 92919 93116 198 Locate
trnL-CAA gene − 93377 93457 81 Locate
ndhB gene − 94000 96202 2203 Locate
rps7 gene − 96477 96944 468 Locate
rps12 gene − 96998 97788 791 Locate
trnV-GAC gene + 99358 99429 72 Locate
rrn16 gene + 99657 101147 1491 Locate
trnI-GAU gene + 101446 102465 1020 Locate
trnA-UGC gene + 102531 103417 887 Locate
rrn23 gene + 103580 106392 2813 Locate
rrn4.5 gene + 106491 106593 103 Locate
rrn5 gene + 106841 106961 121 Locate
trnR-ACG gene + 107186 107259 74 Locate
trnN-GUU gene + 107807 107878 72 Locate
ndhF gene − 108955 111195 2241 Locate
rpl32 gene + 111717 111893 177 Locate
trnL-UAG gene + 112329 112408 80 Locate
ccsA gene + 112502 113476 975 Locate
ndhD gene − 113711 115231 1521 Locate
psaC gene − 115340 115585 246 Locate
ndhE gene − 115837 116142 306 Locate
ndhG gene − 116373 116903 531 Locate
ndhI gene − 117268 117768 501 Locate
ndhA gene − 117849 119946 2098 Locate
ndhH gene − 119948 121129 1182 Locate
rps15 gene − 121226 121498 273 Locate
ycf1 gene − 121772 127207 5436 Locate
trnN-GUU gene + 127537 127608 72 Locate
trnR-ACG gene − 128156 128229 74 Locate
rrn5 gene − 128454 128574 121 Locate
rrn4.5 gene − 128822 128924 103 Locate
rrn23 gene − 129023 131835 2813 Locate
trnA-UGC gene − 131998 132884 887 Locate
trnI-GAU gene − 132950 133969 1020 Locate
rrn16 gene − 134268 135758 1491 Locate
trnV-GAC gene − 135986 136057 72 Locate
rps12 gene + 137627 138417 791 Locate
rps7 gene + 138471 138938 468 Locate
ndhB gene + 139213 141415 2203 Locate
trnL-CAA gene + 141958 142038 81 Locate
ycf15 gene − 142299 142496 198 Locate
ycf2 gene − 142638 149435 6798 Locate
trnI-CAU gene + 149524 149597 74 Locate
rpl23 gene + 149757 150038 282 Locate
rpl2 gene + 150057 151539 1483 Locate
Status Available
Accession MW420970.1
Length 151,637 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources