Scutellaria pacifica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059298.1 · 3–76 bp · −
psbA · PQ059298.1 · 369–1,427 bp · −
trnK-UUU · PQ059298.1 · 1,661–4,248 bp · −
matK · PQ059298.1 · 1,956–3,491 bp · −
rps16 · PQ059298.1 · 5,147–6,307 bp · −
trnQ-UUG · PQ059298.1 · 7,427–7,498 bp · −
trnS-GCU · PQ059298.1 · 8,627–8,714 bp · −
atpA · PQ059298.1 · 10,497–12,020 bp · −
atpF · PQ059298.1 · 12,094–13,321 bp · −
atpH · PQ059298.1 · 13,677–13,922 bp · −
atpI · PQ059298.1 · 14,930–15,673 bp · −
rps2 · PQ059298.1 · 16,021–16,857 bp · −
rpoC2 · PQ059298.1 · 16,943–21,148 bp · −
rpoC1 · PQ059298.1 · 21,299–24,139 bp · −
rpoB · PQ059298.1 · 24,166–27,378 bp · −
psbM · PQ059298.1 · 30,423–30,527 bp · −
trnD-GUC · PQ059298.1 · 31,061–31,134 bp · −
trnY-GUA · PQ059298.1 · 31,248–31,331 bp · −
trnE-UUC · PQ059298.1 · 31,391–31,463 bp · −
trnS-UGA · PQ059298.1 · 36,100–36,191 bp · −
trnfM-CAU · PQ059298.1 · 37,194–37,267 bp · −
rps14 · PQ059298.1 · 37,417–37,719 bp · −
psaB · PQ059298.1 · 37,847–40,051 bp · −
psaA · PQ059298.1 · 40,077–42,329 bp · −
ycf3 · PQ059298.1 · 42,998–44,921 bp · −
rps4 · PQ059298.1 · 46,180–46,785 bp · −
trnT-UGU · PQ059298.1 · 47,130–47,202 bp · −
ndhJ · PQ059298.1 · 49,474–49,950 bp · −
ndhK · PQ059298.1 · 50,058–50,735 bp · −
ndhC · PQ059298.1 · 50,788–51,150 bp · −
trnV-UAC · PQ059298.1 · 52,119–52,771 bp · −
atpE · PQ059298.1 · 53,235–53,636 bp · −
atpB · PQ059298.1 · 53,633–55,120 bp · −
psbJ · PQ059298.1 · 64,888–65,010 bp · −
psbL · PQ059298.1 · 65,144–65,365 bp · −
psbF · PQ059298.1 · 65,284–65,403 bp · −
psbE · PQ059298.1 · 65,418–65,669 bp · −
trnW-CCA · PQ059298.1 · 67,081–67,154 bp · −
trnP-UGG · PQ059298.1 · 67,324–67,397 bp · −
rpl20 · PQ059298.1 · 69,199–69,585 bp · −
rps12 · PQ059298.1 · 70,376–70,501 bp · −
rps12 · PQ059298.1 · 97,725–98,515 bp · −
clpP · PQ059298.1 · 70,644–72,576 bp · −
psbN · PQ059298.1 · 74,944–75,075 bp · −
rpoA · PQ059298.1 · 78,445–79,458 bp · −
rps11 · PQ059298.1 · 79,530–79,946 bp · −
rpl36 · PQ059298.1 · 80,048–80,161 bp · −
infA · PQ059298.1 · 80,257–80,490 bp · −
rps8 · PQ059298.1 · 80,610–81,020 bp · −
rpl14 · PQ059298.1 · 81,192–81,560 bp · −
rpl16 · PQ059298.1 · 81,687–82,930 bp · −
rps3 · PQ059298.1 · 83,085–83,747 bp · −
rpl22 · PQ059298.1 · 83,749–84,204 bp · −
rps19 · PQ059298.1 · 84,264–84,542 bp · −
rpl2 · PQ059298.1 · 84,598–86,080 bp · −
rpl23 · PQ059298.1 · 86,099–86,380 bp · −
trnI-CAU · PQ059298.1 · 86,529–86,602 bp · −
trnL-CAA · PQ059298.1 · 94,095–94,175 bp · −
ndhB · PQ059298.1 · 94,718–96,929 bp · −
rps7 · PQ059298.1 · 97,204–97,671 bp · −
trnN-GUU · PQ059298.1 · 108,552–108,623 bp · −
ndhF · PQ059298.1 · 109,700–111,940 bp · −
ndhD · PQ059298.1 · 114,462–115,964 bp · −
psaC · PQ059298.1 · 116,084–116,329 bp · −
ndhE · PQ059298.1 · 116,586–116,891 bp · −
ndhG · PQ059298.1 · 117,122–117,652 bp · −
ndhI · PQ059298.1 · 118,018–118,518 bp · −
ndhA · PQ059298.1 · 118,599–120,698 bp · −
ndhH · PQ059298.1 · 120,700–121,881 bp · −
rps15 · PQ059298.1 · 121,985–122,257 bp · −
ycf1 · PQ059298.1 · 122,524–128,181 bp · −
trnR-ACG · PQ059298.1 · 129,018–129,091 bp · −
rrn5 · PQ059298.1 · 129,326–129,446 bp · −
rrn4.5 · PQ059298.1 · 129,694–129,796 bp · −
rrn23 · PQ059298.1 · 129,895–132,707 bp · −
trnA-UGC · PQ059298.1 · 132,877–133,757 bp · −
trnI-GAU · PQ059298.1 · 133,822–134,842 bp · −
ycf68 · PQ059298.1 · 134,448–134,687 bp · −
rrn16 · PQ059298.1 · 135,141–136,631 bp · −
trnV-GAC · PQ059298.1 · 136,859–136,930 bp · −
ycf15 · PQ059298.1 · 143,184–143,432 bp · −
ycf2 · PQ059298.1 · 143,523–150,332 bp · −
psbK · PQ059298.1 · 7,823–8,008 bp · +
psbI · PQ059298.1 · 8,399–8,509 bp · +
trnG-UCC · PQ059298.1 · 9,393–10,154 bp · +
trnR-UCU · PQ059298.1 · 10,329–10,400 bp · +
trnC-GCA · PQ059298.1 · 28,544–28,614 bp · +
petN · PQ059298.1 · 29,317–29,406 bp · +
trnT-GGU · PQ059298.1 · 32,046–32,117 bp · +
psbD · PQ059298.1 · 33,427–34,488 bp · +
psbC · PQ059298.1 · 34,436–35,857 bp · +
psbZ · PQ059298.1 · 36,511–36,699 bp · +
trnG-GCC · PQ059298.1 · 36,971–37,041 bp · +
trnS-GGA · PQ059298.1 · 45,808–45,894 bp · +
trnL-UAA · PQ059298.1 · 47,880–48,448 bp · +
trnF-GAA · PQ059298.1 · 48,753–48,825 bp · +
trnM-CAU · PQ059298.1 · 52,953–53,025 bp · +
rbcL · PQ059298.1 · 55,881–57,344 bp · +
accD · PQ059298.1 · 58,066–59,532 bp · +
psaI · PQ059298.1 · 60,249–60,359 bp · +
ycf4 · PQ059298.1 · 60,793–61,347 bp · +
cemA · PQ059298.1 · 62,089–62,688 bp · +
petA · PQ059298.1 · 62,895–63,857 bp · +
petL · PQ059298.1 · 66,578–66,673 bp · +
petG · PQ059298.1 · 66,849–66,962 bp · +
psaJ · PQ059298.1 · 67,670–67,804 bp · +
rpl33 · PQ059298.1 · 68,281–68,481 bp · +
rps18 · PQ059298.1 · 68,656–68,961 bp · +
rps12 · PQ059298.1 · 138,508–139,298 bp · +
psbB · PQ059298.1 · 73,050–74,576 bp · +
psbT · PQ059298.1 · 74,769–74,870 bp · +
psbH · PQ059298.1 · 75,179–75,400 bp · +
petB · PQ059298.1 · 75,525–76,891 bp · +
petD · PQ059298.1 · 77,080–78,282 bp · +
ycf2 · PQ059298.1 · 86,691–93,500 bp · +
ycf15 · PQ059298.1 · 93,591–93,839 bp · +
trnV-GAC · PQ059298.1 · 100,093–100,164 bp · +
rrn16 · PQ059298.1 · 100,392–101,882 bp · +
trnI-GAU · PQ059298.1 · 102,181–103,201 bp · +
trnA-UGC · PQ059298.1 · 103,266–104,146 bp · +
rrn23 · PQ059298.1 · 104,316–107,128 bp · +
rrn4.5 · PQ059298.1 · 107,227–107,329 bp · +
rrn5 · PQ059298.1 · 107,577–107,697 bp · +
trnR-ACG · PQ059298.1 · 107,932–108,005 bp · +
rpl32 · PQ059298.1 · 112,462–112,638 bp · +
trnL-UAG · PQ059298.1 · 113,078–113,157 bp · +
ccsA · PQ059298.1 · 113,255–114,229 bp · +
trnN-GUU · PQ059298.1 · 128,400–128,471 bp · +
rps7 · PQ059298.1 · 139,352–139,819 bp · +
ndhB · PQ059298.1 · 140,094–142,305 bp · +
trnL-CAA · PQ059298.1 · 142,848–142,928 bp · +
trnI-CAU · PQ059298.1 · 150,421–150,494 bp · +
rpl23 · PQ059298.1 · 150,643–150,924 bp · +
rpl2 · PQ059298.1 · 150,943–152,425 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pacifica
ANNOTATED PLASTOME
PQ059298.1
152,521 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38130 76260 114391 152521 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1661 4248 2588 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5147 6307 1161 Locate
trnQ-UUG gene − 7427 7498 72 Locate
psbK gene + 7823 8008 186 Locate
psbI gene + 8399 8509 111 Locate
trnS-GCU gene − 8627 8714 88 Locate
trnG-UCC gene + 9393 10154 762 Locate
trnR-UCU gene + 10329 10400 72 Locate
atpA gene − 10497 12020 1524 Locate
atpF gene − 12094 13321 1228 Locate
atpH gene − 13677 13922 246 Locate
atpI gene − 14930 15673 744 Locate
rps2 gene − 16021 16857 837 Locate
rpoC2 gene − 16943 21148 4206 Locate
rpoC1 gene − 21299 24139 2841 Locate
rpoB gene − 24166 27378 3213 Locate
trnC-GCA gene + 28544 28614 71 Locate
petN gene + 29317 29406 90 Locate
psbM gene − 30423 30527 105 Locate
trnD-GUC gene − 31061 31134 74 Locate
trnY-GUA gene − 31248 31331 84 Locate
trnE-UUC gene − 31391 31463 73 Locate
trnT-GGU gene + 32046 32117 72 Locate
psbD gene + 33427 34488 1062 Locate
psbC gene + 34436 35857 1422 Locate
trnS-UGA gene − 36100 36191 92 Locate
psbZ gene + 36511 36699 189 Locate
trnG-GCC gene + 36971 37041 71 Locate
trnfM-CAU gene − 37194 37267 74 Locate
rps14 gene − 37417 37719 303 Locate
psaB gene − 37847 40051 2205 Locate
psaA gene − 40077 42329 2253 Locate
ycf3 gene − 42998 44921 1924 Locate
trnS-GGA gene + 45808 45894 87 Locate
rps4 gene − 46180 46785 606 Locate
trnT-UGU gene − 47130 47202 73 Locate
trnL-UAA gene + 47880 48448 569 Locate
trnF-GAA gene + 48753 48825 73 Locate
ndhJ gene − 49474 49950 477 Locate
ndhK gene − 50058 50735 678 Locate
ndhC gene − 50788 51150 363 Locate
trnV-UAC gene − 52119 52771 653 Locate
trnM-CAU gene + 52953 53025 73 Locate
atpE gene − 53235 53636 402 Locate
atpB gene − 53633 55120 1488 Locate
rbcL gene + 55881 57344 1464 Locate
accD gene + 58066 59532 1467 Locate
psaI gene + 60249 60359 111 Locate
ycf4 gene + 60793 61347 555 Locate
cemA gene + 62089 62688 600 Locate
petA gene + 62895 63857 963 Locate
psbJ gene − 64888 65010 123 Locate
psbL gene − 65144 65365 222 Locate
psbF gene − 65284 65403 120 Locate
psbE gene − 65418 65669 252 Locate
petL gene + 66578 66673 96 Locate
petG gene + 66849 66962 114 Locate
trnW-CCA gene − 67081 67154 74 Locate
trnP-UGG gene − 67324 67397 74 Locate
psaJ gene + 67670 67804 135 Locate
rpl33 gene + 68281 68481 201 Locate
rps18 gene + 68656 68961 306 Locate
rpl20 gene − 69199 69585 387 Locate
rps12 gene − 70376 70501 126 Locate
clpP gene − 70644 72576 1933 Locate
psbB gene + 73050 74576 1527 Locate
psbT gene + 74769 74870 102 Locate
psbN gene − 74944 75075 132 Locate
psbH gene + 75179 75400 222 Locate
petB gene + 75525 76891 1367 Locate
petD gene + 77080 78282 1203 Locate
rpoA gene − 78445 79458 1014 Locate
rps11 gene − 79530 79946 417 Locate
rpl36 gene − 80048 80161 114 Locate
infA gene − 80257 80490 234 Locate
rps8 gene − 80610 81020 411 Locate
rpl14 gene − 81192 81560 369 Locate
rpl16 gene − 81687 82930 1244 Locate
rps3 gene − 83085 83747 663 Locate
rpl22 gene − 83749 84204 456 Locate
rps19 gene − 84264 84542 279 Locate
rpl2 gene − 84598 86080 1483 Locate
rpl23 gene − 86099 86380 282 Locate
trnI-CAU gene − 86529 86602 74 Locate
ycf2 gene + 86691 93500 6810 Locate
ycf15 gene + 93591 93839 249 Locate
trnL-CAA gene − 94095 94175 81 Locate
ndhB gene − 94718 96929 2212 Locate
rps7 gene − 97204 97671 468 Locate
rps12 gene − 97725 98515 791 Locate
trnV-GAC gene + 100093 100164 72 Locate
rrn16 gene + 100392 101882 1491 Locate
trnI-GAU gene + 102181 103201 1021 Locate
trnA-UGC gene + 103266 104146 881 Locate
rrn23 gene + 104316 107128 2813 Locate
rrn4.5 gene + 107227 107329 103 Locate
rrn5 gene + 107577 107697 121 Locate
trnR-ACG gene + 107932 108005 74 Locate
trnN-GUU gene − 108552 108623 72 Locate
ndhF gene − 109700 111940 2241 Locate
rpl32 gene + 112462 112638 177 Locate
trnL-UAG gene + 113078 113157 80 Locate
ccsA gene + 113255 114229 975 Locate
ndhD gene − 114462 115964 1503 Locate
psaC gene − 116084 116329 246 Locate
ndhE gene − 116586 116891 306 Locate
ndhG gene − 117122 117652 531 Locate
ndhI gene − 118018 118518 501 Locate
ndhA gene − 118599 120698 2100 Locate
ndhH gene − 120700 121881 1182 Locate
rps15 gene − 121985 122257 273 Locate
ycf1 gene − 122524 128181 5658 Locate
trnN-GUU gene + 128400 128471 72 Locate
trnR-ACG gene − 129018 129091 74 Locate
rrn5 gene − 129326 129446 121 Locate
rrn4.5 gene − 129694 129796 103 Locate
rrn23 gene − 129895 132707 2813 Locate
trnA-UGC gene − 132877 133757 881 Locate
trnI-GAU gene − 133822 134842 1021 Locate
ycf68 gene − 134448 134687 240 Locate
rrn16 gene − 135141 136631 1491 Locate
trnV-GAC gene − 136859 136930 72 Locate
rps12 gene + 138508 139298 791 Locate
rps7 gene + 139352 139819 468 Locate
ndhB gene + 140094 142305 2212 Locate
trnL-CAA gene + 142848 142928 81 Locate
ycf15 gene − 143184 143432 249 Locate
ycf2 gene − 143523 150332 6810 Locate
trnI-CAU gene + 150421 150494 74 Locate
rpl23 gene + 150643 150924 282 Locate
rpl2 gene + 150943 152425 1483 Locate
Status Available
Accession PQ059298.1
Length 152,521 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources