Scutellaria parvula var. australis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059330.1 · 3–76 bp · −
psbA · PQ059330.1 · 371–1,429 bp · −
trnK-UUU · PQ059330.1 · 1,662–4,249 bp · −
matK · PQ059330.1 · 1,957–3,492 bp · −
rps16 · PQ059330.1 · 5,157–6,329 bp · −
trnQ-UUG · PQ059330.1 · 7,460–7,531 bp · −
trnS-GCU · PQ059330.1 · 8,655–8,742 bp · −
atpA · PQ059330.1 · 10,529–12,052 bp · −
atpF · PQ059330.1 · 12,126–13,352 bp · −
atpH · PQ059330.1 · 13,714–13,959 bp · −
atpI · PQ059330.1 · 14,955–15,698 bp · −
rps2 · PQ059330.1 · 16,060–16,770 bp · −
rpoC2 · PQ059330.1 · 16,987–21,192 bp · −
rpoC1 · PQ059330.1 · 21,347–24,178 bp · −
rpoB · PQ059330.1 · 24,205–27,417 bp · −
psbM · PQ059330.1 · 30,491–30,595 bp · −
trnD-GUC · PQ059330.1 · 31,122–31,195 bp · −
trnY-GUA · PQ059330.1 · 31,309–31,392 bp · −
trnE-UUC · PQ059330.1 · 31,452–31,524 bp · −
trnS-UGA · PQ059330.1 · 36,161–36,252 bp · −
trnfM-CAU · PQ059330.1 · 37,255–37,328 bp · −
rps14 · PQ059330.1 · 37,478–37,780 bp · −
psaB · PQ059330.1 · 37,908–40,112 bp · −
psaA · PQ059330.1 · 40,138–42,390 bp · −
ycf3 · PQ059330.1 · 43,069–44,991 bp · −
rps4 · PQ059330.1 · 46,250–46,855 bp · −
trnT-UGU · PQ059330.1 · 47,194–47,266 bp · −
ndhJ · PQ059330.1 · 49,542–50,018 bp · −
ndhK · PQ059330.1 · 50,126–50,803 bp · −
ndhC · PQ059330.1 · 50,856–51,218 bp · −
trnV-UAC · PQ059330.1 · 52,218–52,870 bp · −
atpE · PQ059330.1 · 53,334–53,735 bp · −
atpB · PQ059330.1 · 53,732–55,219 bp · −
psbJ · PQ059330.1 · 64,964–65,086 bp · −
psbL · PQ059330.1 · 65,220–65,336 bp · −
psbF · PQ059330.1 · 65,360–65,479 bp · −
psbE · PQ059330.1 · 65,494–65,745 bp · −
trnW-CCA · PQ059330.1 · 67,156–67,229 bp · −
trnP-UGG · PQ059330.1 · 67,400–67,473 bp · −
rpl20 · PQ059330.1 · 69,270–69,656 bp · −
rps12 · PQ059330.1 · 70,451–70,564 bp · −
rps12 · PQ059330.1 · 97,777–98,567 bp · −
clpP · PQ059330.1 · 70,707–72,640 bp · −
psbN · PQ059330.1 · 74,995–75,126 bp · −
rpoA · PQ059330.1 · 78,498–79,511 bp · −
rps11 · PQ059330.1 · 79,583–79,999 bp · −
rpl36 · PQ059330.1 · 80,101–80,214 bp · −
infA · PQ059330.1 · 80,310–80,543 bp · −
rps8 · PQ059330.1 · 80,663–81,073 bp · −
rpl14 · PQ059330.1 · 81,243–81,611 bp · −
rpl16 · PQ059330.1 · 81,738–82,981 bp · −
rps3 · PQ059330.1 · 83,127–83,789 bp · −
rpl22 · PQ059330.1 · 83,791–84,246 bp · −
rps19 · PQ059330.1 · 84,306–84,584 bp · −
rpl2 · PQ059330.1 · 84,639–86,121 bp · −
rpl23 · PQ059330.1 · 86,140–86,421 bp · −
trnI-CAU · PQ059330.1 · 86,581–86,654 bp · −
trnL-CAA · PQ059330.1 · 94,147–94,227 bp · −
ndhB · PQ059330.1 · 94,770–96,927 bp · −
rps7 · PQ059330.1 · 97,256–97,723 bp · −
trnN-GUU · PQ059330.1 · 108,605–108,676 bp · −
ndhF · PQ059330.1 · 109,753–111,993 bp · −
ndhD · PQ059330.1 · 114,508–116,031 bp · −
psaC · PQ059330.1 · 116,130–116,375 bp · −
ndhE · PQ059330.1 · 116,632–116,937 bp · −
ndhG · PQ059330.1 · 117,168–117,698 bp · −
ndhI · PQ059330.1 · 118,063–118,563 bp · −
ndhA · PQ059330.1 · 118,644–120,736 bp · −
ndhH · PQ059330.1 · 120,738–121,949 bp · −
rps15 · PQ059330.1 · 122,022–122,354 bp · −
ycf1 · PQ059330.1 · 122,563–128,220 bp · −
trnR-ACG · PQ059330.1 · 129,057–129,130 bp · −
rrn5 · PQ059330.1 · 129,365–129,485 bp · −
rrn4.5 · PQ059330.1 · 129,733–129,835 bp · −
rrn23 · PQ059330.1 · 129,934–132,746 bp · −
trnA-UGC · PQ059330.1 · 132,916–133,797 bp · −
trnI-GAU · PQ059330.1 · 133,862–134,882 bp · −
ycf68 · PQ059330.1 · 134,488–134,727 bp · −
rrn16 · PQ059330.1 · 135,181–136,671 bp · −
trnV-GAC · PQ059330.1 · 136,899–136,970 bp · −
ycf15 · PQ059330.1 · 143,224–143,421 bp · −
ycf2 · PQ059330.1 · 143,563–150,372 bp · −
psbK · PQ059330.1 · 7,859–8,044 bp · +
psbI · PQ059330.1 · 8,426–8,536 bp · +
trnG-UCC · PQ059330.1 · 9,431–10,185 bp · +
trnR-UCU · PQ059330.1 · 10,355–10,426 bp · +
trnC-GCA · PQ059330.1 · 28,580–28,650 bp · +
petN · PQ059330.1 · 29,356–29,445 bp · +
trnT-GGU · PQ059330.1 · 32,107–32,178 bp · +
psbD · PQ059330.1 · 33,488–34,549 bp · +
psbC · PQ059330.1 · 34,497–35,918 bp · +
psbZ · PQ059330.1 · 36,573–36,761 bp · +
trnG-GCC · PQ059330.1 · 37,033–37,103 bp · +
trnS-GGA · PQ059330.1 · 45,878–45,964 bp · +
trnL-UAA · PQ059330.1 · 47,953–48,520 bp · +
trnF-GAA · PQ059330.1 · 48,826–48,898 bp · +
trnM-CAU · PQ059330.1 · 53,052–53,124 bp · +
rbcL · PQ059330.1 · 55,971–57,434 bp · +
accD · PQ059330.1 · 58,164–59,630 bp · +
psaI · PQ059330.1 · 60,331–60,441 bp · +
ycf4 · PQ059330.1 · 60,875–61,429 bp · +
cemA · PQ059330.1 · 62,171–62,770 bp · +
petA · PQ059330.1 · 62,977–63,939 bp · +
petL · PQ059330.1 · 66,653–66,748 bp · +
petG · PQ059330.1 · 66,924–67,037 bp · +
psaJ · PQ059330.1 · 67,746–67,880 bp · +
rpl33 · PQ059330.1 · 68,353–68,553 bp · +
rps18 · PQ059330.1 · 68,728–69,033 bp · +
rps12 · PQ059330.1 · 138,548–139,338 bp · +
psbB · PQ059330.1 · 73,102–74,628 bp · +
psbT · PQ059330.1 · 74,820–74,921 bp · +
psbH · PQ059330.1 · 75,230–75,451 bp · +
petB · PQ059330.1 · 75,576–76,945 bp · +
petD · PQ059330.1 · 77,134–78,335 bp · +
ycf2 · PQ059330.1 · 86,743–93,552 bp · +
ycf15 · PQ059330.1 · 93,694–93,891 bp · +
trnV-GAC · PQ059330.1 · 100,145–100,216 bp · +
rrn16 · PQ059330.1 · 100,444–101,934 bp · +
trnI-GAU · PQ059330.1 · 102,233–103,253 bp · +
trnA-UGC · PQ059330.1 · 103,318–104,199 bp · +
rrn23 · PQ059330.1 · 104,369–107,181 bp · +
rrn4.5 · PQ059330.1 · 107,280–107,382 bp · +
rrn5 · PQ059330.1 · 107,630–107,750 bp · +
trnR-ACG · PQ059330.1 · 107,985–108,058 bp · +
rpl32 · PQ059330.1 · 112,515–112,691 bp · +
trnL-UAG · PQ059330.1 · 113,121–113,200 bp · +
ccsA · PQ059330.1 · 113,301–114,275 bp · +
trnN-GUU · PQ059330.1 · 128,439–128,510 bp · +
rps7 · PQ059330.1 · 139,392–139,859 bp · +
ndhB · PQ059330.1 · 140,188–142,345 bp · +
trnL-CAA · PQ059330.1 · 142,888–142,968 bp · +
trnI-CAU · PQ059330.1 · 150,461–150,534 bp · +
rpl23 · PQ059330.1 · 150,694–150,975 bp · +
rpl2 · PQ059330.1 · 150,994–152,476 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria parvula var. australis
ANNOTATED PLASTOME
PQ059330.1
152,571 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38143 76286 114428 152571 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 371 1429 1059 Locate
trnK-UUU gene − 1662 4249 2588 Locate
matK gene − 1957 3492 1536 Locate
rps16 gene − 5157 6329 1173 Locate
trnQ-UUG gene − 7460 7531 72 Locate
psbK gene + 7859 8044 186 Locate
psbI gene + 8426 8536 111 Locate
trnS-GCU gene − 8655 8742 88 Locate
trnG-UCC gene + 9431 10185 755 Locate
trnR-UCU gene + 10355 10426 72 Locate
atpA gene − 10529 12052 1524 Locate
atpF gene − 12126 13352 1227 Locate
atpH gene − 13714 13959 246 Locate
atpI gene − 14955 15698 744 Locate
rps2 gene − 16060 16770 711 Locate
rpoC2 gene − 16987 21192 4206 Locate
rpoC1 gene − 21347 24178 2832 Locate
rpoB gene − 24205 27417 3213 Locate
trnC-GCA gene + 28580 28650 71 Locate
petN gene + 29356 29445 90 Locate
psbM gene − 30491 30595 105 Locate
trnD-GUC gene − 31122 31195 74 Locate
trnY-GUA gene − 31309 31392 84 Locate
trnE-UUC gene − 31452 31524 73 Locate
trnT-GGU gene + 32107 32178 72 Locate
psbD gene + 33488 34549 1062 Locate
psbC gene + 34497 35918 1422 Locate
trnS-UGA gene − 36161 36252 92 Locate
psbZ gene + 36573 36761 189 Locate
trnG-GCC gene + 37033 37103 71 Locate
trnfM-CAU gene − 37255 37328 74 Locate
rps14 gene − 37478 37780 303 Locate
psaB gene − 37908 40112 2205 Locate
psaA gene − 40138 42390 2253 Locate
ycf3 gene − 43069 44991 1923 Locate
trnS-GGA gene + 45878 45964 87 Locate
rps4 gene − 46250 46855 606 Locate
trnT-UGU gene − 47194 47266 73 Locate
trnL-UAA gene + 47953 48520 568 Locate
trnF-GAA gene + 48826 48898 73 Locate
ndhJ gene − 49542 50018 477 Locate
ndhK gene − 50126 50803 678 Locate
ndhC gene − 50856 51218 363 Locate
trnV-UAC gene − 52218 52870 653 Locate
trnM-CAU gene + 53052 53124 73 Locate
atpE gene − 53334 53735 402 Locate
atpB gene − 53732 55219 1488 Locate
rbcL gene + 55971 57434 1464 Locate
accD gene + 58164 59630 1467 Locate
psaI gene + 60331 60441 111 Locate
ycf4 gene + 60875 61429 555 Locate
cemA gene + 62171 62770 600 Locate
petA gene + 62977 63939 963 Locate
psbJ gene − 64964 65086 123 Locate
psbL gene − 65220 65336 117 Locate
psbF gene − 65360 65479 120 Locate
psbE gene − 65494 65745 252 Locate
petL gene + 66653 66748 96 Locate
petG gene + 66924 67037 114 Locate
trnW-CCA gene − 67156 67229 74 Locate
trnP-UGG gene − 67400 67473 74 Locate
psaJ gene + 67746 67880 135 Locate
rpl33 gene + 68353 68553 201 Locate
rps18 gene + 68728 69033 306 Locate
rpl20 gene − 69270 69656 387 Locate
rps12 gene − 70451 70564 114 Locate
clpP gene − 70707 72640 1934 Locate
psbB gene + 73102 74628 1527 Locate
psbT gene + 74820 74921 102 Locate
psbN gene − 74995 75126 132 Locate
psbH gene + 75230 75451 222 Locate
petB gene + 75576 76945 1370 Locate
petD gene + 77134 78335 1202 Locate
rpoA gene − 78498 79511 1014 Locate
rps11 gene − 79583 79999 417 Locate
rpl36 gene − 80101 80214 114 Locate
infA gene − 80310 80543 234 Locate
rps8 gene − 80663 81073 411 Locate
rpl14 gene − 81243 81611 369 Locate
rpl16 gene − 81738 82981 1244 Locate
rps3 gene − 83127 83789 663 Locate
rpl22 gene − 83791 84246 456 Locate
rps19 gene − 84306 84584 279 Locate
rpl2 gene − 84639 86121 1483 Locate
rpl23 gene − 86140 86421 282 Locate
trnI-CAU gene − 86581 86654 74 Locate
ycf2 gene + 86743 93552 6810 Locate
ycf15 gene + 93694 93891 198 Locate
trnL-CAA gene − 94147 94227 81 Locate
ndhB gene − 94770 96927 2158 Locate
rps7 gene − 97256 97723 468 Locate
rps12 gene − 97777 98567 791 Locate
trnV-GAC gene + 100145 100216 72 Locate
rrn16 gene + 100444 101934 1491 Locate
trnI-GAU gene + 102233 103253 1021 Locate
trnA-UGC gene + 103318 104199 882 Locate
rrn23 gene + 104369 107181 2813 Locate
rrn4.5 gene + 107280 107382 103 Locate
rrn5 gene + 107630 107750 121 Locate
trnR-ACG gene + 107985 108058 74 Locate
trnN-GUU gene − 108605 108676 72 Locate
ndhF gene − 109753 111993 2241 Locate
rpl32 gene + 112515 112691 177 Locate
trnL-UAG gene + 113121 113200 80 Locate
ccsA gene + 113301 114275 975 Locate
ndhD gene − 114508 116031 1524 Locate
psaC gene − 116130 116375 246 Locate
ndhE gene − 116632 116937 306 Locate
ndhG gene − 117168 117698 531 Locate
ndhI gene − 118063 118563 501 Locate
ndhA gene − 118644 120736 2093 Locate
ndhH gene − 120738 121949 1212 Locate
rps15 gene − 122022 122354 333 Locate
ycf1 gene − 122563 128220 5658 Locate
trnN-GUU gene + 128439 128510 72 Locate
trnR-ACG gene − 129057 129130 74 Locate
rrn5 gene − 129365 129485 121 Locate
rrn4.5 gene − 129733 129835 103 Locate
rrn23 gene − 129934 132746 2813 Locate
trnA-UGC gene − 132916 133797 882 Locate
trnI-GAU gene − 133862 134882 1021 Locate
ycf68 gene − 134488 134727 240 Locate
rrn16 gene − 135181 136671 1491 Locate
trnV-GAC gene − 136899 136970 72 Locate
rps12 gene + 138548 139338 791 Locate
rps7 gene + 139392 139859 468 Locate
ndhB gene + 140188 142345 2158 Locate
trnL-CAA gene + 142888 142968 81 Locate
ycf15 gene − 143224 143421 198 Locate
ycf2 gene − 143563 150372 6810 Locate
trnI-CAU gene + 150461 150534 74 Locate
rpl23 gene + 150694 150975 282 Locate
rpl2 gene + 150994 152476 1483 Locate
Status Available
Accession PQ059330.1
Length 152,571 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources