Scutellaria parvula var. leonardi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059313.1 · 3–76 bp · −
psbA · PQ059313.1 · 371–1,429 bp · −
trnK-UUU · PQ059313.1 · 1,662–4,249 bp · −
matK · PQ059313.1 · 1,957–3,492 bp · −
rps16 · PQ059313.1 · 5,157–6,329 bp · −
trnQ-UUG · PQ059313.1 · 7,460–7,531 bp · −
trnS-GCU · PQ059313.1 · 8,655–8,742 bp · −
atpA · PQ059313.1 · 10,529–12,052 bp · −
atpF · PQ059313.1 · 12,126–13,352 bp · −
atpH · PQ059313.1 · 13,715–13,960 bp · −
atpI · PQ059313.1 · 14,956–15,699 bp · −
rps2 · PQ059313.1 · 16,061–16,771 bp · −
rpoC2 · PQ059313.1 · 16,988–21,193 bp · −
rpoC1 · PQ059313.1 · 21,348–24,179 bp · −
rpoB · PQ059313.1 · 24,206–27,418 bp · −
psbM · PQ059313.1 · 30,492–30,596 bp · −
trnD-GUC · PQ059313.1 · 31,123–31,196 bp · −
trnY-GUA · PQ059313.1 · 31,310–31,393 bp · −
trnE-UUC · PQ059313.1 · 31,453–31,525 bp · −
trnS-UGA · PQ059313.1 · 36,162–36,253 bp · −
trnfM-CAU · PQ059313.1 · 37,256–37,329 bp · −
rps14 · PQ059313.1 · 37,479–37,781 bp · −
psaB · PQ059313.1 · 37,909–40,113 bp · −
psaA · PQ059313.1 · 40,139–42,391 bp · −
ycf3 · PQ059313.1 · 43,070–44,992 bp · −
rps4 · PQ059313.1 · 46,251–46,856 bp · −
trnT-UGU · PQ059313.1 · 47,195–47,267 bp · −
ndhJ · PQ059313.1 · 49,543–50,019 bp · −
ndhK · PQ059313.1 · 50,127–50,804 bp · −
ndhC · PQ059313.1 · 50,857–51,219 bp · −
trnV-UAC · PQ059313.1 · 52,219–52,871 bp · −
atpE · PQ059313.1 · 53,335–53,736 bp · −
atpB · PQ059313.1 · 53,733–55,220 bp · −
psbJ · PQ059313.1 · 64,965–65,087 bp · −
psbL · PQ059313.1 · 65,221–65,442 bp · −
psbF · PQ059313.1 · 65,361–65,480 bp · −
psbE · PQ059313.1 · 65,495–65,746 bp · −
trnW-CCA · PQ059313.1 · 67,157–67,230 bp · −
trnP-UGG · PQ059313.1 · 67,401–67,474 bp · −
rpl20 · PQ059313.1 · 69,271–69,657 bp · −
rps12 · PQ059313.1 · 70,452–70,565 bp · −
rps12 · PQ059313.1 · 97,778–98,568 bp · −
clpP · PQ059313.1 · 70,708–72,641 bp · −
psbN · PQ059313.1 · 74,996–75,127 bp · −
rpoA · PQ059313.1 · 78,499–79,512 bp · −
rps11 · PQ059313.1 · 79,584–80,000 bp · −
rpl36 · PQ059313.1 · 80,102–80,215 bp · −
infA · PQ059313.1 · 80,311–80,544 bp · −
rps8 · PQ059313.1 · 80,664–81,074 bp · −
rpl14 · PQ059313.1 · 81,244–81,612 bp · −
rpl16 · PQ059313.1 · 81,739–82,982 bp · −
rps3 · PQ059313.1 · 83,128–83,790 bp · −
rpl22 · PQ059313.1 · 83,792–84,247 bp · −
rps19 · PQ059313.1 · 84,307–84,585 bp · −
rpl2 · PQ059313.1 · 84,640–86,122 bp · −
rpl23 · PQ059313.1 · 86,141–86,422 bp · −
trnI-CAU · PQ059313.1 · 86,582–86,655 bp · −
trnL-CAA · PQ059313.1 · 94,148–94,228 bp · −
ndhB · PQ059313.1 · 94,771–96,982 bp · −
rps7 · PQ059313.1 · 97,257–97,724 bp · −
trnN-GUU · PQ059313.1 · 108,605–108,676 bp · −
ndhF · PQ059313.1 · 109,753–111,993 bp · −
ndhD · PQ059313.1 · 114,508–116,031 bp · −
psaC · PQ059313.1 · 116,130–116,375 bp · −
ndhE · PQ059313.1 · 116,632–116,937 bp · −
ndhG · PQ059313.1 · 117,168–117,698 bp · −
ndhI · PQ059313.1 · 118,063–118,563 bp · −
ndhA · PQ059313.1 · 118,644–120,736 bp · −
ndhH · PQ059313.1 · 120,738–121,949 bp · −
rps15 · PQ059313.1 · 122,022–122,354 bp · −
ycf1 · PQ059313.1 · 122,563–128,220 bp · −
trnR-ACG · PQ059313.1 · 129,057–129,130 bp · −
rrn5 · PQ059313.1 · 129,365–129,485 bp · −
rrn4.5 · PQ059313.1 · 129,733–129,835 bp · −
rrn23 · PQ059313.1 · 129,934–132,746 bp · −
trnA-UGC · PQ059313.1 · 132,916–133,796 bp · −
trnI-GAU · PQ059313.1 · 133,861–134,881 bp · −
ycf68 · PQ059313.1 · 134,487–134,726 bp · −
rrn16 · PQ059313.1 · 135,180–136,670 bp · −
trnV-GAC · PQ059313.1 · 136,898–136,969 bp · −
ycf15 · PQ059313.1 · 143,223–143,420 bp · −
ycf2 · PQ059313.1 · 143,562–150,371 bp · −
psbK · PQ059313.1 · 7,859–8,044 bp · +
psbI · PQ059313.1 · 8,426–8,536 bp · +
trnG-UCC · PQ059313.1 · 9,431–10,185 bp · +
trnR-UCU · PQ059313.1 · 10,355–10,426 bp · +
trnC-GCA · PQ059313.1 · 28,581–28,651 bp · +
petN · PQ059313.1 · 29,357–29,446 bp · +
trnT-GGU · PQ059313.1 · 32,108–32,179 bp · +
psbD · PQ059313.1 · 33,489–34,550 bp · +
psbC · PQ059313.1 · 34,498–35,919 bp · +
psbZ · PQ059313.1 · 36,574–36,762 bp · +
trnG-GCC · PQ059313.1 · 37,034–37,104 bp · +
trnS-GGA · PQ059313.1 · 45,879–45,965 bp · +
trnL-UAA · PQ059313.1 · 47,954–48,521 bp · +
trnF-GAA · PQ059313.1 · 48,827–48,899 bp · +
trnM-CAU · PQ059313.1 · 53,053–53,125 bp · +
rbcL · PQ059313.1 · 55,972–57,435 bp · +
accD · PQ059313.1 · 58,165–59,631 bp · +
psaI · PQ059313.1 · 60,332–60,442 bp · +
ycf4 · PQ059313.1 · 60,876–61,430 bp · +
cemA · PQ059313.1 · 62,172–62,771 bp · +
petA · PQ059313.1 · 62,978–63,940 bp · +
petL · PQ059313.1 · 66,654–66,749 bp · +
petG · PQ059313.1 · 66,925–67,038 bp · +
psaJ · PQ059313.1 · 67,747–67,881 bp · +
rpl33 · PQ059313.1 · 68,354–68,554 bp · +
rps18 · PQ059313.1 · 68,729–69,034 bp · +
rps12 · PQ059313.1 · 138,547–139,337 bp · +
psbB · PQ059313.1 · 73,103–74,629 bp · +
psbT · PQ059313.1 · 74,821–74,922 bp · +
psbH · PQ059313.1 · 75,231–75,452 bp · +
petB · PQ059313.1 · 75,577–76,946 bp · +
petD · PQ059313.1 · 77,135–78,336 bp · +
ycf2 · PQ059313.1 · 86,744–93,553 bp · +
ycf15 · PQ059313.1 · 93,695–93,892 bp · +
trnV-GAC · PQ059313.1 · 100,146–100,217 bp · +
rrn16 · PQ059313.1 · 100,445–101,935 bp · +
trnI-GAU · PQ059313.1 · 102,234–103,254 bp · +
trnA-UGC · PQ059313.1 · 103,319–104,199 bp · +
rrn23 · PQ059313.1 · 104,369–107,181 bp · +
rrn4.5 · PQ059313.1 · 107,280–107,382 bp · +
rrn5 · PQ059313.1 · 107,630–107,750 bp · +
trnR-ACG · PQ059313.1 · 107,985–108,058 bp · +
rpl32 · PQ059313.1 · 112,515–112,691 bp · +
trnL-UAG · PQ059313.1 · 113,121–113,200 bp · +
ccsA · PQ059313.1 · 113,301–114,275 bp · +
trnN-GUU · PQ059313.1 · 128,439–128,510 bp · +
rps7 · PQ059313.1 · 139,391–139,858 bp · +
ndhB · PQ059313.1 · 140,133–142,344 bp · +
trnL-CAA · PQ059313.1 · 142,887–142,967 bp · +
trnI-CAU · PQ059313.1 · 150,460–150,533 bp · +
rpl23 · PQ059313.1 · 150,693–150,974 bp · +
rpl2 · PQ059313.1 · 150,993–152,475 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria parvula var. leonardi
ANNOTATED PLASTOME
PQ059313.1
152,570 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38142 76285 114428 152570 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 371 1429 1059 Locate
trnK-UUU gene − 1662 4249 2588 Locate
matK gene − 1957 3492 1536 Locate
rps16 gene − 5157 6329 1173 Locate
trnQ-UUG gene − 7460 7531 72 Locate
psbK gene + 7859 8044 186 Locate
psbI gene + 8426 8536 111 Locate
trnS-GCU gene − 8655 8742 88 Locate
trnG-UCC gene + 9431 10185 755 Locate
trnR-UCU gene + 10355 10426 72 Locate
atpA gene − 10529 12052 1524 Locate
atpF gene − 12126 13352 1227 Locate
atpH gene − 13715 13960 246 Locate
atpI gene − 14956 15699 744 Locate
rps2 gene − 16061 16771 711 Locate
rpoC2 gene − 16988 21193 4206 Locate
rpoC1 gene − 21348 24179 2832 Locate
rpoB gene − 24206 27418 3213 Locate
trnC-GCA gene + 28581 28651 71 Locate
petN gene + 29357 29446 90 Locate
psbM gene − 30492 30596 105 Locate
trnD-GUC gene − 31123 31196 74 Locate
trnY-GUA gene − 31310 31393 84 Locate
trnE-UUC gene − 31453 31525 73 Locate
trnT-GGU gene + 32108 32179 72 Locate
psbD gene + 33489 34550 1062 Locate
psbC gene + 34498 35919 1422 Locate
trnS-UGA gene − 36162 36253 92 Locate
psbZ gene + 36574 36762 189 Locate
trnG-GCC gene + 37034 37104 71 Locate
trnfM-CAU gene − 37256 37329 74 Locate
rps14 gene − 37479 37781 303 Locate
psaB gene − 37909 40113 2205 Locate
psaA gene − 40139 42391 2253 Locate
ycf3 gene − 43070 44992 1923 Locate
trnS-GGA gene + 45879 45965 87 Locate
rps4 gene − 46251 46856 606 Locate
trnT-UGU gene − 47195 47267 73 Locate
trnL-UAA gene + 47954 48521 568 Locate
trnF-GAA gene + 48827 48899 73 Locate
ndhJ gene − 49543 50019 477 Locate
ndhK gene − 50127 50804 678 Locate
ndhC gene − 50857 51219 363 Locate
trnV-UAC gene − 52219 52871 653 Locate
trnM-CAU gene + 53053 53125 73 Locate
atpE gene − 53335 53736 402 Locate
atpB gene − 53733 55220 1488 Locate
rbcL gene + 55972 57435 1464 Locate
accD gene + 58165 59631 1467 Locate
psaI gene + 60332 60442 111 Locate
ycf4 gene + 60876 61430 555 Locate
cemA gene + 62172 62771 600 Locate
petA gene + 62978 63940 963 Locate
psbJ gene − 64965 65087 123 Locate
psbL gene − 65221 65442 222 Locate
psbF gene − 65361 65480 120 Locate
psbE gene − 65495 65746 252 Locate
petL gene + 66654 66749 96 Locate
petG gene + 66925 67038 114 Locate
trnW-CCA gene − 67157 67230 74 Locate
trnP-UGG gene − 67401 67474 74 Locate
psaJ gene + 67747 67881 135 Locate
rpl33 gene + 68354 68554 201 Locate
rps18 gene + 68729 69034 306 Locate
rpl20 gene − 69271 69657 387 Locate
rps12 gene − 70452 70565 114 Locate
clpP gene − 70708 72641 1934 Locate
psbB gene + 73103 74629 1527 Locate
psbT gene + 74821 74922 102 Locate
psbN gene − 74996 75127 132 Locate
psbH gene + 75231 75452 222 Locate
petB gene + 75577 76946 1370 Locate
petD gene + 77135 78336 1202 Locate
rpoA gene − 78499 79512 1014 Locate
rps11 gene − 79584 80000 417 Locate
rpl36 gene − 80102 80215 114 Locate
infA gene − 80311 80544 234 Locate
rps8 gene − 80664 81074 411 Locate
rpl14 gene − 81244 81612 369 Locate
rpl16 gene − 81739 82982 1244 Locate
rps3 gene − 83128 83790 663 Locate
rpl22 gene − 83792 84247 456 Locate
rps19 gene − 84307 84585 279 Locate
rpl2 gene − 84640 86122 1483 Locate
rpl23 gene − 86141 86422 282 Locate
trnI-CAU gene − 86582 86655 74 Locate
ycf2 gene + 86744 93553 6810 Locate
ycf15 gene + 93695 93892 198 Locate
trnL-CAA gene − 94148 94228 81 Locate
ndhB gene − 94771 96982 2212 Locate
rps7 gene − 97257 97724 468 Locate
rps12 gene − 97778 98568 791 Locate
trnV-GAC gene + 100146 100217 72 Locate
rrn16 gene + 100445 101935 1491 Locate
trnI-GAU gene + 102234 103254 1021 Locate
trnA-UGC gene + 103319 104199 881 Locate
rrn23 gene + 104369 107181 2813 Locate
rrn4.5 gene + 107280 107382 103 Locate
rrn5 gene + 107630 107750 121 Locate
trnR-ACG gene + 107985 108058 74 Locate
trnN-GUU gene − 108605 108676 72 Locate
ndhF gene − 109753 111993 2241 Locate
rpl32 gene + 112515 112691 177 Locate
trnL-UAG gene + 113121 113200 80 Locate
ccsA gene + 113301 114275 975 Locate
ndhD gene − 114508 116031 1524 Locate
psaC gene − 116130 116375 246 Locate
ndhE gene − 116632 116937 306 Locate
ndhG gene − 117168 117698 531 Locate
ndhI gene − 118063 118563 501 Locate
ndhA gene − 118644 120736 2093 Locate
ndhH gene − 120738 121949 1212 Locate
rps15 gene − 122022 122354 333 Locate
ycf1 gene − 122563 128220 5658 Locate
trnN-GUU gene + 128439 128510 72 Locate
trnR-ACG gene − 129057 129130 74 Locate
rrn5 gene − 129365 129485 121 Locate
rrn4.5 gene − 129733 129835 103 Locate
rrn23 gene − 129934 132746 2813 Locate
trnA-UGC gene − 132916 133796 881 Locate
trnI-GAU gene − 133861 134881 1021 Locate
ycf68 gene − 134487 134726 240 Locate
rrn16 gene − 135180 136670 1491 Locate
trnV-GAC gene − 136898 136969 72 Locate
rps12 gene + 138547 139337 791 Locate
rps7 gene + 139391 139858 468 Locate
ndhB gene + 140133 142344 2212 Locate
trnL-CAA gene + 142887 142967 81 Locate
ycf15 gene − 143223 143420 198 Locate
ycf2 gene − 143562 150371 6810 Locate
trnI-CAU gene + 150460 150533 74 Locate
rpl23 gene + 150693 150974 282 Locate
rpl2 gene + 150993 152475 1483 Locate
Status Available
Accession PQ059313.1
Length 152,570 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources