Scutellaria parvula chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420964.1 · 3–76 bp · −
psbA · MW420964.1 · 371–1,429 bp · −
trnK-UUU · MW420964.1 · 1,666–4,245 bp · −
matK · MW420964.1 · 1,957–3,492 bp · −
rps16 · MW420964.1 · 5,156–6,328 bp · −
trnQ-UUC · MW420964.1 · 7,459–7,530 bp · −
trnS-GCU · MW420964.1 · 8,659–8,746 bp · −
atpA · MW420964.1 · 10,538–12,061 bp · −
atpF · MW420964.1 · 12,135–13,361 bp · −
atpH · MW420964.1 · 13,723–13,968 bp · −
atpI · MW420964.1 · 14,964–15,707 bp · −
rps2 · MW420964.1 · 16,069–16,779 bp · −
rpoC2 · MW420964.1 · 16,996–21,201 bp · −
rpoC1 · MW420964.1 · 21,356–24,187 bp · −
rpoB · MW420964.1 · 24,214–27,426 bp · −
psbM · MW420964.1 · 30,492–30,596 bp · −
trnD-GUC · MW420964.1 · 31,123–31,196 bp · −
trnY-GUA · MW420964.1 · 31,310–31,393 bp · −
trnE-UUC · MW420964.1 · 31,453–31,525 bp · −
trnS-UCA · MW420964.1 · 36,161–36,253 bp · −
trnfM-CAU · MW420964.1 · 37,256–37,329 bp · −
rps14 · MW420964.1 · 37,479–37,781 bp · −
psaB · MW420964.1 · 37,909–40,113 bp · −
psaA · MW420964.1 · 40,139–42,391 bp · −
ycf3 · MW420964.1 · 43,069–44,986 bp · −
rps4 · MW420964.1 · 46,245–46,850 bp · −
trnT-UGU · MW420964.1 · 47,189–47,261 bp · −
ndhJ · MW420964.1 · 49,536–50,012 bp · −
ndhK · MW420964.1 · 50,120–50,797 bp · −
ndhC · MW420964.1 · 50,850–51,212 bp · −
trnV-UAC · MW420964.1 · 52,211–52,863 bp · −
atpE · MW420964.1 · 53,327–53,728 bp · −
atpB · MW420964.1 · 53,725–55,212 bp · −
pabJ · MW420964.1 · 64,972–65,094 bp · −
psbL · MW420964.1 · 65,228–65,344 bp · −
psbF · MW420964.1 · 65,368–65,487 bp · −
psbE · MW420964.1 · 65,502–65,753 bp · −
trnW-CCA · MW420964.1 · 67,164–67,237 bp · −
trnP-UGG · MW420964.1 · 67,408–67,481 bp · −
rpl20 · MW420964.1 · 69,279–69,665 bp · −
rps12 · MW420964.1 · 70,448–70,573 bp · −
rps12 · MW420964.1 · 97,787–98,577 bp · −
clpP · MW420964.1 · 70,716–72,649 bp · −
psbN · MW420964.1 · 75,004–75,135 bp · −
rpoA · MW420964.1 · 78,507–79,520 bp · −
rps11 · MW420964.1 · 79,592–80,008 bp · −
rpl36 · MW420964.1 · 80,110–80,223 bp · −
infA · MW420964.1 · 80,319–80,552 bp · −
rps8 · MW420964.1 · 80,673–81,083 bp · −
rpl14 · MW420964.1 · 81,253–81,621 bp · −
rpl16 · MW420964.1 · 81,748–82,991 bp · −
rps3 · MW420964.1 · 83,137–83,799 bp · −
rpl22 · MW420964.1 · 83,801–84,256 bp · −
rps19 · MW420964.1 · 84,316–84,594 bp · −
rpl2 · MW420964.1 · 84,649–86,131 bp · −
rpl23 · MW420964.1 · 86,150–86,431 bp · −
trnI-CAU · MW420964.1 · 86,591–86,664 bp · −
trnL-CAA · MW420964.1 · 94,157–94,237 bp · −
ndhB · MW420964.1 · 94,780–96,991 bp · −
rps7 · MW420964.1 · 97,266–97,733 bp · −
ndhF · MW420964.1 · 109,763–112,003 bp · −
ndhD · MW420964.1 · 114,521–116,041 bp · −
psaC · MW420964.1 · 116,143–116,388 bp · −
ndhE · MW420964.1 · 116,645–116,950 bp · −
ndhG · MW420964.1 · 117,181–117,711 bp · −
ndhI · MW420964.1 · 118,076–118,576 bp · −
ndhA · MW420964.1 · 118,657–120,749 bp · −
ndhH · MW420964.1 · 120,751–121,932 bp · −
rps15 · MW420964.1 · 122,035–122,307 bp · −
ycf1 · MW420964.1 · 122,576–128,122 bp · −
trnR-ACG · MW420964.1 · 129,070–129,143 bp · −
rrn5 · MW420964.1 · 129,378–129,498 bp · −
rrn4.5 · MW420964.1 · 129,746–129,848 bp · −
rrn23 · MW420964.1 · 129,947–132,759 bp · −
trnA-UGC · MW420964.1 · 132,929–133,810 bp · −
trnI-GAU · MW420964.1 · 133,876–134,895 bp · −
rrn16 · MW420964.1 · 135,194–136,684 bp · −
trnV-GAC · MW420964.1 · 136,912–136,983 bp · −
ycf15 · MW420964.1 · 143,237–143,434 bp · −
ycf2 · MW420964.1 · 143,576–150,385 bp · −
psbK · MW420964.1 · 7,862–8,047 bp · +
psbI · MW420964.1 · 8,430–8,540 bp · +
trnG-CGA · MW420964.1 · 9,435–10,189 bp · +
trnR-UCU · MW420964.1 · 10,364–10,435 bp · +
trnC-GCA · MW420964.1 · 28,590–28,660 bp · +
petN · MW420964.1 · 29,366–29,455 bp · +
trnT-GGU · MW420964.1 · 32,108–32,179 bp · +
psbD · MW420964.1 · 33,489–34,550 bp · +
psbC · MW420964.1 · 34,498–35,919 bp · +
psbZ · MW420964.1 · 36,574–36,762 bp · +
trnG-GCC · MW420964.1 · 37,034–37,104 bp · +
trnS-GGA · MW420964.1 · 45,873–45,959 bp · +
trnL-UAA · MW420964.1 · 47,949–48,516 bp · +
trnF-GAA · MW420964.1 · 48,821–48,893 bp · +
trnM-CAU · MW420964.1 · 53,045–53,117 bp · +
rbcL · MW420964.1 · 55,984–57,426 bp · +
accD · MW420964.1 · 58,156–59,622 bp · +
psaI · MW420964.1 · 60,339–60,449 bp · +
ycf4 · MW420964.1 · 60,883–61,437 bp · +
cemA · MW420964.1 · 62,119–62,778 bp · +
petA · MW420964.1 · 62,985–63,947 bp · +
petL · MW420964.1 · 66,661–66,756 bp · +
petG · MW420964.1 · 66,932–67,045 bp · +
psbJ · MW420964.1 · 67,754–67,888 bp · +
rpl33 · MW420964.1 · 68,361–68,561 bp · +
rps18 · MW420964.1 · 68,736–69,041 bp · +
rps12 · MW420964.1 · 138,561–139,351 bp · +
psbB · MW420964.1 · 73,111–74,637 bp · +
psbT · MW420964.1 · 74,829–74,930 bp · +
psbH · MW420964.1 · 75,239–75,460 bp · +
petB · MW420964.1 · 75,585–76,954 bp · +
petD · MW420964.1 · 77,143–78,344 bp · +
ycf2 · MW420964.1 · 86,753–93,562 bp · +
ycf15 · MW420964.1 · 93,704–93,901 bp · +
trnV-GAC · MW420964.1 · 100,155–100,226 bp · +
rrn16 · MW420964.1 · 100,454–101,944 bp · +
trnI-GAU · MW420964.1 · 102,243–103,262 bp · +
trnA-UGC · MW420964.1 · 103,328–104,209 bp · +
rrn23 · MW420964.1 · 104,379–107,191 bp · +
rrn4.5 · MW420964.1 · 107,290–107,392 bp · +
rrn5 · MW420964.1 · 107,640–107,760 bp · +
trnR-ACG · MW420964.1 · 107,995–108,068 bp · +
trnN-GUU · MW420964.1 · 108,615–108,686 bp · +
rpl32 · MW420964.1 · 112,525–112,701 bp · +
trnL-UAG · MW420964.1 · 113,131–113,210 bp · +
ccsA · MW420964.1 · 113,314–114,288 bp · +
trnN-GUU · MW420964.1 · 128,452–128,523 bp · +
rps7 · MW420964.1 · 139,405–139,872 bp · +
ndhB · MW420964.1 · 140,147–142,358 bp · +
trnL-CAA · MW420964.1 · 142,901–142,981 bp · +
trnI-CAU · MW420964.1 · 150,474–150,547 bp · +
rpl23 · MW420964.1 · 150,707–150,988 bp · +
rpl2 · MW420964.1 · 151,007–152,489 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria parvula
ANNOTATED PLASTOME
MW420964.1
152,584 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38146 76292 114438 152584 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 371 1429 1059 Locate
trnK-UUU gene − 1666 4245 2580 Locate
matK gene − 1957 3492 1536 Locate
rps16 gene − 5156 6328 1173 Locate
trnQ-UUC gene − 7459 7530 72 Locate
psbK gene + 7862 8047 186 Locate
psbI gene + 8430 8540 111 Locate
trnS-GCU gene − 8659 8746 88 Locate
trnG-CGA gene + 9435 10189 755 Locate
trnR-UCU gene + 10364 10435 72 Locate
atpA gene − 10538 12061 1524 Locate
atpF gene − 12135 13361 1227 Locate
atpH gene − 13723 13968 246 Locate
atpI gene − 14964 15707 744 Locate
rps2 gene − 16069 16779 711 Locate
rpoC2 gene − 16996 21201 4206 Locate
rpoC1 gene − 21356 24187 2832 Locate
rpoB gene − 24214 27426 3213 Locate
trnC-GCA gene + 28590 28660 71 Locate
petN gene + 29366 29455 90 Locate
psbM gene − 30492 30596 105 Locate
trnD-GUC gene − 31123 31196 74 Locate
trnY-GUA gene − 31310 31393 84 Locate
trnE-UUC gene − 31453 31525 73 Locate
trnT-GGU gene + 32108 32179 72 Locate
psbD gene + 33489 34550 1062 Locate
psbC gene + 34498 35919 1422 Locate
trnS-UCA gene − 36161 36253 93 Locate
psbZ gene + 36574 36762 189 Locate
trnG-GCC gene + 37034 37104 71 Locate
trnfM-CAU gene − 37256 37329 74 Locate
rps14 gene − 37479 37781 303 Locate
psaB gene − 37909 40113 2205 Locate
psaA gene − 40139 42391 2253 Locate
ycf3 gene − 43069 44986 1918 Locate
trnS-GGA gene + 45873 45959 87 Locate
rps4 gene − 46245 46850 606 Locate
trnT-UGU gene − 47189 47261 73 Locate
trnL-UAA gene + 47949 48516 568 Locate
trnF-GAA gene + 48821 48893 73 Locate
ndhJ gene − 49536 50012 477 Locate
ndhK gene − 50120 50797 678 Locate
ndhC gene − 50850 51212 363 Locate
trnV-UAC gene − 52211 52863 653 Locate
trnM-CAU gene + 53045 53117 73 Locate
atpE gene − 53327 53728 402 Locate
atpB gene − 53725 55212 1488 Locate
rbcL gene + 55984 57426 1443 Locate
accD gene + 58156 59622 1467 Locate
psaI gene + 60339 60449 111 Locate
ycf4 gene + 60883 61437 555 Locate
cemA gene + 62119 62778 660 Locate
petA gene + 62985 63947 963 Locate
pabJ gene − 64972 65094 123 Locate
psbL gene − 65228 65344 117 Locate
psbF gene − 65368 65487 120 Locate
psbE gene − 65502 65753 252 Locate
petL gene + 66661 66756 96 Locate
petG gene + 66932 67045 114 Locate
trnW-CCA gene − 67164 67237 74 Locate
trnP-UGG gene − 67408 67481 74 Locate
psbJ gene + 67754 67888 135 Locate
rpl33 gene + 68361 68561 201 Locate
rps18 gene + 68736 69041 306 Locate
rpl20 gene − 69279 69665 387 Locate
rps12 gene − 70448 70573 126 Locate
clpP gene − 70716 72649 1934 Locate
psbB gene + 73111 74637 1527 Locate
psbT gene + 74829 74930 102 Locate
psbN gene − 75004 75135 132 Locate
psbH gene + 75239 75460 222 Locate
petB gene + 75585 76954 1370 Locate
petD gene + 77143 78344 1202 Locate
rpoA gene − 78507 79520 1014 Locate
rps11 gene − 79592 80008 417 Locate
rpl36 gene − 80110 80223 114 Locate
infA gene − 80319 80552 234 Locate
rps8 gene − 80673 81083 411 Locate
rpl14 gene − 81253 81621 369 Locate
rpl16 gene − 81748 82991 1244 Locate
rps3 gene − 83137 83799 663 Locate
rpl22 gene − 83801 84256 456 Locate
rps19 gene − 84316 84594 279 Locate
rpl2 gene − 84649 86131 1483 Locate
rpl23 gene − 86150 86431 282 Locate
trnI-CAU gene − 86591 86664 74 Locate
ycf2 gene + 86753 93562 6810 Locate
ycf15 gene + 93704 93901 198 Locate
trnL-CAA gene − 94157 94237 81 Locate
ndhB gene − 94780 96991 2212 Locate
rps7 gene − 97266 97733 468 Locate
rps12 gene − 97787 98577 791 Locate
trnV-GAC gene + 100155 100226 72 Locate
rrn16 gene + 100454 101944 1491 Locate
trnI-GAU gene + 102243 103262 1020 Locate
trnA-UGC gene + 103328 104209 882 Locate
rrn23 gene + 104379 107191 2813 Locate
rrn4.5 gene + 107290 107392 103 Locate
rrn5 gene + 107640 107760 121 Locate
trnR-ACG gene + 107995 108068 74 Locate
trnN-GUU gene + 108615 108686 72 Locate
ndhF gene − 109763 112003 2241 Locate
rpl32 gene + 112525 112701 177 Locate
trnL-UAG gene + 113131 113210 80 Locate
ccsA gene + 113314 114288 975 Locate
ndhD gene − 114521 116041 1521 Locate
psaC gene − 116143 116388 246 Locate
ndhE gene − 116645 116950 306 Locate
ndhG gene − 117181 117711 531 Locate
ndhI gene − 118076 118576 501 Locate
ndhA gene − 118657 120749 2093 Locate
ndhH gene − 120751 121932 1182 Locate
rps15 gene − 122035 122307 273 Locate
ycf1 gene − 122576 128122 5547 Locate
trnN-GUU gene + 128452 128523 72 Locate
trnR-ACG gene − 129070 129143 74 Locate
rrn5 gene − 129378 129498 121 Locate
rrn4.5 gene − 129746 129848 103 Locate
rrn23 gene − 129947 132759 2813 Locate
trnA-UGC gene − 132929 133810 882 Locate
trnI-GAU gene − 133876 134895 1020 Locate
rrn16 gene − 135194 136684 1491 Locate
trnV-GAC gene − 136912 136983 72 Locate
rps12 gene + 138561 139351 791 Locate
rps7 gene + 139405 139872 468 Locate
ndhB gene + 140147 142358 2212 Locate
trnL-CAA gene + 142901 142981 81 Locate
ycf15 gene − 143237 143434 198 Locate
ycf2 gene − 143576 150385 6810 Locate
trnI-CAU gene + 150474 150547 74 Locate
rpl23 gene + 150707 150988 282 Locate
rpl2 gene + 151007 152489 1483 Locate
Status Available
Accession MW420964.1
Length 152,584 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources