Scutellaria paulsenii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058238.1 · 4–77 bp · −
psbA · PQ058238.1 · 373–1,431 bp · −
trnK-UUU · PQ058238.1 · 1,673–4,254 bp · −
matK · PQ058238.1 · 1,963–3,489 bp · −
rps16 · PQ058238.1 · 5,156–6,314 bp · −
trnQ-UUG · PQ058238.1 · 7,060–7,131 bp · −
trnS-GCU · PQ058238.1 · 8,262–8,349 bp · −
atpA · PQ058238.1 · 10,147–11,670 bp · −
atpF · PQ058238.1 · 11,752–12,980 bp · −
atpH · PQ058238.1 · 13,340–13,585 bp · −
atpI · PQ058238.1 · 14,573–15,316 bp · −
rps2 · PQ058238.1 · 15,662–16,372 bp · −
rpoC2 · PQ058238.1 · 16,587–20,792 bp · −
rpoC1 · PQ058238.1 · 20,947–23,783 bp · −
rpoB · PQ058238.1 · 23,810–27,022 bp · −
psbM · PQ058238.1 · 30,042–30,146 bp · −
trnD-GUC · PQ058238.1 · 30,672–30,745 bp · −
trnY-GUA · PQ058238.1 · 30,859–30,942 bp · −
trnE-UUC · PQ058238.1 · 31,002–31,074 bp · −
trnS-UGA · PQ058238.1 · 35,692–35,783 bp · −
trnfM-CAU · PQ058238.1 · 36,785–36,858 bp · −
rps14 · PQ058238.1 · 37,013–37,315 bp · −
psaB · PQ058238.1 · 37,444–39,648 bp · −
psaA · PQ058238.1 · 39,674–41,926 bp · −
ycf3 · PQ058238.1 · 42,636–44,556 bp · −
rps4 · PQ058238.1 · 45,801–46,406 bp · −
trnT-UGU · PQ058238.1 · 46,751–46,823 bp · −
ndhJ · PQ058238.1 · 49,075–49,551 bp · −
ndhK · PQ058238.1 · 49,660–50,421 bp · −
ndhC · PQ058238.1 · 50,391–50,753 bp · −
trnV-UAC · PQ058238.1 · 51,728–52,380 bp · −
atpE · PQ058238.1 · 52,835–53,236 bp · −
atpB · PQ058238.1 · 53,233–54,729 bp · −
psbJ · PQ058238.1 · 64,464–64,586 bp · −
psbL · PQ058238.1 · 64,720–64,941 bp · −
psbF · PQ058238.1 · 64,860–64,979 bp · −
psbE · PQ058238.1 · 64,994–65,245 bp · −
trnW-CCA · PQ058238.1 · 66,626–66,699 bp · −
trnP-UGG · PQ058238.1 · 66,869–66,942 bp · −
rpl20 · PQ058238.1 · 68,739–69,125 bp · −
rps12 · PQ058238.1 · 69,920–70,033 bp · −
rps12 · PQ058238.1 · 97,181–97,971 bp · −
clpP · PQ058238.1 · 70,175–72,103 bp · −
psbN · PQ058238.1 · 74,441–74,572 bp · −
rpoA · PQ058238.1 · 78,136–78,936 bp · −
rps11 · PQ058238.1 · 79,008–79,424 bp · −
rpl36 · PQ058238.1 · 79,526–79,639 bp · −
infA · PQ058238.1 · 79,734–79,967 bp · −
rps8 · PQ058238.1 · 80,091–80,501 bp · −
rpl14 · PQ058238.1 · 80,653–81,021 bp · −
rpl16 · PQ058238.1 · 81,148–82,381 bp · −
rps3 · PQ058238.1 · 82,537–83,199 bp · −
rpl22 · PQ058238.1 · 83,201–83,656 bp · −
rps19 · PQ058238.1 · 83,716–83,994 bp · −
rpl2 · PQ058238.1 · 84,049–85,530 bp · −
rpl23 · PQ058238.1 · 85,549–85,830 bp · −
trnI-CAU · PQ058238.1 · 85,990–86,063 bp · −
trnL-CAA · PQ058238.1 · 93,551–93,631 bp · −
ndhB · PQ058238.1 · 94,174–96,385 bp · −
rps7 · PQ058238.1 · 96,660–97,127 bp · −
trnN-GUU · PQ058238.1 · 108,007–108,078 bp · −
ndhF · PQ058238.1 · 109,135–111,396 bp · −
ndhD · PQ058238.1 · 113,756–115,285 bp · −
psaC · PQ058238.1 · 115,386–115,631 bp · −
ndhE · PQ058238.1 · 115,887–116,192 bp · −
ndhG · PQ058238.1 · 116,409–116,939 bp · −
ndhI · PQ058238.1 · 117,310–117,810 bp · −
ndhA · PQ058238.1 · 117,896–120,017 bp · −
ndhH · PQ058238.1 · 120,019–121,230 bp · −
rps15 · PQ058238.1 · 121,297–121,569 bp · −
ycf1 · PQ058238.1 · 121,767–127,403 bp · −
trnR-ACG · PQ058238.1 · 128,242–128,315 bp · −
rrn5 · PQ058238.1 · 128,550–128,670 bp · −
rrn4.5 · PQ058238.1 · 128,918–129,020 bp · −
rrn23 · PQ058238.1 · 129,119–131,930 bp · −
trnA-UGC · PQ058238.1 · 132,100–132,986 bp · −
trnI-GAU · PQ058238.1 · 133,051–134,070 bp · −
ycf68 · PQ058238.1 · 133,622–133,915 bp · −
rrn16 · PQ058238.1 · 134,369–135,859 bp · −
trnV-GAC · PQ058238.1 · 136,086–136,157 bp · −
ycf15 · PQ058238.1 · 142,409–142,606 bp · −
ycf2 · PQ058238.1 · 142,748–149,548 bp · −
psbK · PQ058238.1 · 7,456–7,641 bp · +
psbI · PQ058238.1 · 8,033–8,143 bp · +
trnG-UCC · PQ058238.1 · 9,048–9,804 bp · +
trnR-UCU · PQ058238.1 · 9,979–10,050 bp · +
trnC-GCA · PQ058238.1 · 28,183–28,253 bp · +
petN · PQ058238.1 · 28,962–29,051 bp · +
trnT-GGU · PQ058238.1 · 31,650–31,721 bp · +
psbD · PQ058238.1 · 33,026–34,087 bp · +
psbC · PQ058238.1 · 34,035–35,456 bp · +
psbZ · PQ058238.1 · 36,099–36,287 bp · +
trnG-GCC · PQ058238.1 · 36,566–36,636 bp · +
trnS-GGA · PQ058238.1 · 45,439–45,525 bp · +
trnL-UAA · PQ058238.1 · 47,495–48,054 bp · +
trnF-GAA · PQ058238.1 · 48,355–48,427 bp · +
trnM-CAU · PQ058238.1 · 52,569–52,641 bp · +
rbcL · PQ058238.1 · 55,480–56,943 bp · +
accD · PQ058238.1 · 57,657–59,135 bp · +
psaI · PQ058238.1 · 59,842–59,952 bp · +
ycf4 · PQ058238.1 · 60,386–60,940 bp · +
cemA · PQ058238.1 · 61,689–62,288 bp · +
petA · PQ058238.1 · 62,495–63,457 bp · +
petL · PQ058238.1 · 66,123–66,218 bp · +
petG · PQ058238.1 · 66,394–66,507 bp · +
psaJ · PQ058238.1 · 67,214–67,348 bp · +
rpl33 · PQ058238.1 · 67,824–68,024 bp · +
rps18 · PQ058238.1 · 68,199–68,504 bp · +
rps12 · PQ058238.1 · 137,729–138,519 bp · +
psbB · PQ058238.1 · 72,555–74,081 bp · +
psbT · PQ058238.1 · 74,273–74,380 bp · +
psbH · PQ058238.1 · 74,676–74,897 bp · +
petB · PQ058238.1 · 75,022–76,392 bp · +
petD · PQ058238.1 · 76,575–77,781 bp · +
ycf2 · PQ058238.1 · 86,152–92,952 bp · +
ycf15 · PQ058238.1 · 93,094–93,291 bp · +
trnV-GAC · PQ058238.1 · 99,543–99,614 bp · +
rrn16 · PQ058238.1 · 99,841–101,331 bp · +
trnI-GAU · PQ058238.1 · 101,630–102,649 bp · +
trnA-UGC · PQ058238.1 · 102,714–103,600 bp · +
rrn23 · PQ058238.1 · 103,770–106,581 bp · +
rrn4.5 · PQ058238.1 · 106,680–106,782 bp · +
rrn5 · PQ058238.1 · 107,030–107,150 bp · +
trnR-ACG · PQ058238.1 · 107,385–107,458 bp · +
rpl32 · PQ058238.1 · 111,724–111,900 bp · +
trnL-UAG · PQ058238.1 · 112,344–112,423 bp · +
ccsA · PQ058238.1 · 112,525–113,499 bp · +
trnN-GUU · PQ058238.1 · 127,622–127,693 bp · +
rps7 · PQ058238.1 · 138,573–139,040 bp · +
ndhB · PQ058238.1 · 139,315–141,526 bp · +
trnL-CAA · PQ058238.1 · 142,069–142,149 bp · +
trnI-CAU · PQ058238.1 · 149,637–149,710 bp · +
rpl23 · PQ058238.1 · 149,870–150,151 bp · +
rpl2 · PQ058238.1 · 150,170–151,651 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria paulsenii
ANNOTATED PLASTOME
PQ058238.1
151,751 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37938 75876 113813 151751 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 373 1431 1059 Locate
trnK-UUU gene − 1673 4254 2582 Locate
matK gene − 1963 3489 1527 Locate
rps16 gene − 5156 6314 1159 Locate
trnQ-UUG gene − 7060 7131 72 Locate
psbK gene + 7456 7641 186 Locate
psbI gene + 8033 8143 111 Locate
trnS-GCU gene − 8262 8349 88 Locate
trnG-UCC gene + 9048 9804 757 Locate
trnR-UCU gene + 9979 10050 72 Locate
atpA gene − 10147 11670 1524 Locate
atpF gene − 11752 12980 1229 Locate
atpH gene − 13340 13585 246 Locate
atpI gene − 14573 15316 744 Locate
rps2 gene − 15662 16372 711 Locate
rpoC2 gene − 16587 20792 4206 Locate
rpoC1 gene − 20947 23783 2837 Locate
rpoB gene − 23810 27022 3213 Locate
trnC-GCA gene + 28183 28253 71 Locate
petN gene + 28962 29051 90 Locate
psbM gene − 30042 30146 105 Locate
trnD-GUC gene − 30672 30745 74 Locate
trnY-GUA gene − 30859 30942 84 Locate
trnE-UUC gene − 31002 31074 73 Locate
trnT-GGU gene + 31650 31721 72 Locate
psbD gene + 33026 34087 1062 Locate
psbC gene + 34035 35456 1422 Locate
trnS-UGA gene − 35692 35783 92 Locate
psbZ gene + 36099 36287 189 Locate
trnG-GCC gene + 36566 36636 71 Locate
trnfM-CAU gene − 36785 36858 74 Locate
rps14 gene − 37013 37315 303 Locate
psaB gene − 37444 39648 2205 Locate
psaA gene − 39674 41926 2253 Locate
ycf3 gene − 42636 44556 1921 Locate
trnS-GGA gene + 45439 45525 87 Locate
rps4 gene − 45801 46406 606 Locate
trnT-UGU gene − 46751 46823 73 Locate
trnL-UAA gene + 47495 48054 560 Locate
trnF-GAA gene + 48355 48427 73 Locate
ndhJ gene − 49075 49551 477 Locate
ndhK gene − 49660 50421 762 Locate
ndhC gene − 50391 50753 363 Locate
trnV-UAC gene − 51728 52380 653 Locate
trnM-CAU gene + 52569 52641 73 Locate
atpE gene − 52835 53236 402 Locate
atpB gene − 53233 54729 1497 Locate
rbcL gene + 55480 56943 1464 Locate
accD gene + 57657 59135 1479 Locate
psaI gene + 59842 59952 111 Locate
ycf4 gene + 60386 60940 555 Locate
cemA gene + 61689 62288 600 Locate
petA gene + 62495 63457 963 Locate
psbJ gene − 64464 64586 123 Locate
psbL gene − 64720 64941 222 Locate
psbF gene − 64860 64979 120 Locate
psbE gene − 64994 65245 252 Locate
petL gene + 66123 66218 96 Locate
petG gene + 66394 66507 114 Locate
trnW-CCA gene − 66626 66699 74 Locate
trnP-UGG gene − 66869 66942 74 Locate
psaJ gene + 67214 67348 135 Locate
rpl33 gene + 67824 68024 201 Locate
rps18 gene + 68199 68504 306 Locate
rpl20 gene − 68739 69125 387 Locate
rps12 gene − 69920 70033 114 Locate
clpP gene − 70175 72103 1929 Locate
psbB gene + 72555 74081 1527 Locate
psbT gene + 74273 74380 108 Locate
psbN gene − 74441 74572 132 Locate
psbH gene + 74676 74897 222 Locate
petB gene + 75022 76392 1371 Locate
petD gene + 76575 77781 1207 Locate
rpoA gene − 78136 78936 801 Locate
rps11 gene − 79008 79424 417 Locate
rpl36 gene − 79526 79639 114 Locate
infA gene − 79734 79967 234 Locate
rps8 gene − 80091 80501 411 Locate
rpl14 gene − 80653 81021 369 Locate
rpl16 gene − 81148 82381 1234 Locate
rps3 gene − 82537 83199 663 Locate
rpl22 gene − 83201 83656 456 Locate
rps19 gene − 83716 83994 279 Locate
rpl2 gene − 84049 85530 1482 Locate
rpl23 gene − 85549 85830 282 Locate
trnI-CAU gene − 85990 86063 74 Locate
ycf2 gene + 86152 92952 6801 Locate
ycf15 gene + 93094 93291 198 Locate
trnL-CAA gene − 93551 93631 81 Locate
ndhB gene − 94174 96385 2212 Locate
rps7 gene − 96660 97127 468 Locate
rps12 gene − 97181 97971 791 Locate
trnV-GAC gene + 99543 99614 72 Locate
rrn16 gene + 99841 101331 1491 Locate
trnI-GAU gene + 101630 102649 1020 Locate
trnA-UGC gene + 102714 103600 887 Locate
rrn23 gene + 103770 106581 2812 Locate
rrn4.5 gene + 106680 106782 103 Locate
rrn5 gene + 107030 107150 121 Locate
trnR-ACG gene + 107385 107458 74 Locate
trnN-GUU gene − 108007 108078 72 Locate
ndhF gene − 109135 111396 2262 Locate
rpl32 gene + 111724 111900 177 Locate
trnL-UAG gene + 112344 112423 80 Locate
ccsA gene + 112525 113499 975 Locate
ndhD gene − 113756 115285 1530 Locate
psaC gene − 115386 115631 246 Locate
ndhE gene − 115887 116192 306 Locate
ndhG gene − 116409 116939 531 Locate
ndhI gene − 117310 117810 501 Locate
ndhA gene − 117896 120017 2122 Locate
ndhH gene − 120019 121230 1212 Locate
rps15 gene − 121297 121569 273 Locate
ycf1 gene − 121767 127403 5637 Locate
trnN-GUU gene + 127622 127693 72 Locate
trnR-ACG gene − 128242 128315 74 Locate
rrn5 gene − 128550 128670 121 Locate
rrn4.5 gene − 128918 129020 103 Locate
rrn23 gene − 129119 131930 2812 Locate
trnA-UGC gene − 132100 132986 887 Locate
trnI-GAU gene − 133051 134070 1020 Locate
ycf68 gene − 133622 133915 294 Locate
rrn16 gene − 134369 135859 1491 Locate
trnV-GAC gene − 136086 136157 72 Locate
rps12 gene + 137729 138519 791 Locate
rps7 gene + 138573 139040 468 Locate
ndhB gene + 139315 141526 2212 Locate
trnL-CAA gene + 142069 142149 81 Locate
ycf15 gene − 142409 142606 198 Locate
ycf2 gene − 142748 149548 6801 Locate
trnI-CAU gene + 149637 149710 74 Locate
rpl23 gene + 149870 150151 282 Locate
rpl2 gene + 150170 151651 1482 Locate
Status Available
Accession PQ058238.1
Length 151,751 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources