Scutellaria pekinensis var. maxima chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420953.1 · 3–76 bp · −
psbA · MW420953.1 · 369–1,427 bp · −
trnK-UUU · MW420953.1 · 1,665–4,244 bp · −
matK · MW420953.1 · 1,956–3,491 bp · −
rps16 · MW420953.1 · 5,147–6,307 bp · −
trnQ-UUC · MW420953.1 · 7,427–7,498 bp · −
trnS-GCU · MW420953.1 · 8,627–8,714 bp · −
atpA · MW420953.1 · 10,497–12,020 bp · −
atpF · MW420953.1 · 12,094–13,321 bp · −
atpH · MW420953.1 · 13,677–13,922 bp · −
atpI · MW420953.1 · 14,930–15,673 bp · −
rps2 · MW420953.1 · 16,021–16,731 bp · −
rpoC2 · MW420953.1 · 16,943–21,148 bp · −
rpoC1 · MW420953.1 · 21,299–24,139 bp · −
rpoB · MW420953.1 · 24,166–27,378 bp · −
psbM · MW420953.1 · 30,423–30,527 bp · −
trnD-GUC · MW420953.1 · 31,061–31,134 bp · −
trnY-GUA · MW420953.1 · 31,248–31,331 bp · −
trnE-UUC · MW420953.1 · 31,391–31,463 bp · −
trnS-UCA · MW420953.1 · 36,099–36,191 bp · −
trnfM-CAU · MW420953.1 · 37,194–37,267 bp · −
rps14 · MW420953.1 · 37,417–37,719 bp · −
psaB · MW420953.1 · 37,847–40,051 bp · −
psaA · MW420953.1 · 40,077–42,329 bp · −
ycf3 · MW420953.1 · 42,999–44,922 bp · −
rps4 · MW420953.1 · 46,181–46,786 bp · −
trnT-UGU · MW420953.1 · 47,131–47,203 bp · −
ndhJ · MW420953.1 · 49,475–49,951 bp · −
ndhK · MW420953.1 · 50,059–50,736 bp · −
ndhC · MW420953.1 · 50,789–51,151 bp · −
trnV-UAC · MW420953.1 · 52,120–52,772 bp · −
atpE · MW420953.1 · 53,236–53,637 bp · −
atpB · MW420953.1 · 53,634–55,121 bp · −
pabJ · MW420953.1 · 64,889–65,011 bp · −
psbL · MW420953.1 · 65,145–65,261 bp · −
psbF · MW420953.1 · 65,285–65,404 bp · −
psbE · MW420953.1 · 65,419–65,670 bp · −
trnW-CCA · MW420953.1 · 67,082–67,155 bp · −
trnP-UGG · MW420953.1 · 67,325–67,398 bp · −
rpl20 · MW420953.1 · 69,200–69,586 bp · −
rps12 · MW420953.1 · 70,377–70,502 bp · −
rps12 · MW420953.1 · 97,726–98,516 bp · −
clpP · MW420953.1 · 70,645–72,577 bp · −
psbN · MW420953.1 · 74,945–75,076 bp · −
rpoA · MW420953.1 · 78,446–79,459 bp · −
rps11 · MW420953.1 · 79,531–79,947 bp · −
rpl36 · MW420953.1 · 80,049–80,162 bp · −
infA · MW420953.1 · 80,258–80,491 bp · −
rps8 · MW420953.1 · 80,611–81,021 bp · −
rpl14 · MW420953.1 · 81,193–81,561 bp · −
rpl16 · MW420953.1 · 81,688–82,931 bp · −
rps3 · MW420953.1 · 83,086–83,748 bp · −
rpl22 · MW420953.1 · 83,750–84,205 bp · −
rps19 · MW420953.1 · 84,265–84,543 bp · −
rpl2 · MW420953.1 · 84,599–86,081 bp · −
rpl23 · MW420953.1 · 86,100–86,381 bp · −
trnI-CAU · MW420953.1 · 86,530–86,603 bp · −
trnL-CAA · MW420953.1 · 94,096–94,176 bp · −
ndhB · MW420953.1 · 94,719–96,930 bp · −
rps7 · MW420953.1 · 97,205–97,672 bp · −
ndhF · MW420953.1 · 109,701–111,941 bp · −
ndhD · MW420953.1 · 114,471–115,991 bp · −
psaC · MW420953.1 · 116,093–116,338 bp · −
ndhE · MW420953.1 · 116,595–116,900 bp · −
ndhG · MW420953.1 · 117,131–117,661 bp · −
ndhI · MW420953.1 · 118,027–118,527 bp · −
ndhA · MW420953.1 · 118,608–120,707 bp · −
ndhH · MW420953.1 · 120,709–121,890 bp · −
rps15 · MW420953.1 · 121,994–122,266 bp · −
ycf1 · MW420953.1 · 122,533–128,079 bp · −
trnR-ACG · MW420953.1 · 129,027–129,100 bp · −
rrn5 · MW420953.1 · 129,335–129,455 bp · −
rrn4.5 · MW420953.1 · 129,703–129,805 bp · −
rrn23 · MW420953.1 · 129,904–132,716 bp · −
trnA-UGC · MW420953.1 · 132,886–133,766 bp · −
trnI-GAU · MW420953.1 · 133,832–134,851 bp · −
rrn16 · MW420953.1 · 135,150–136,640 bp · −
trnV-GAC · MW420953.1 · 136,868–136,939 bp · −
ycf15 · MW420953.1 · 143,193–143,390 bp · −
ycf2 · MW420953.1 · 143,532–150,341 bp · −
psbK · MW420953.1 · 7,823–8,008 bp · +
psbI · MW420953.1 · 8,399–8,509 bp · +
trnG-CGA · MW420953.1 · 9,393–10,154 bp · +
trnR-UCU · MW420953.1 · 10,329–10,400 bp · +
trnC-GCA · MW420953.1 · 28,544–28,614 bp · +
petN · MW420953.1 · 29,317–29,406 bp · +
trnT-GGU · MW420953.1 · 32,046–32,117 bp · +
psbD · MW420953.1 · 33,427–34,488 bp · +
psbC · MW420953.1 · 34,436–35,857 bp · +
psbZ · MW420953.1 · 36,511–36,699 bp · +
trnG-GCC · MW420953.1 · 36,971–37,041 bp · +
trnS-GGA · MW420953.1 · 45,809–45,895 bp · +
trnL-UAA · MW420953.1 · 47,881–48,450 bp · +
trnF-GAA · MW420953.1 · 48,754–48,826 bp · +
trnM-CAU · MW420953.1 · 52,954–53,026 bp · +
rbcL · MW420953.1 · 55,903–57,345 bp · +
accD · MW420953.1 · 58,067–59,533 bp · +
psaI · MW420953.1 · 60,250–60,360 bp · +
ycf4 · MW420953.1 · 60,794–61,348 bp · +
cemA · MW420953.1 · 62,030–62,689 bp · +
petA · MW420953.1 · 62,896–63,858 bp · +
petL · MW420953.1 · 66,579–66,674 bp · +
petG · MW420953.1 · 66,850–66,963 bp · +
psbJ · MW420953.1 · 67,671–67,805 bp · +
rpl33 · MW420953.1 · 68,282–68,482 bp · +
rps18 · MW420953.1 · 68,657–68,962 bp · +
rps12 · MW420953.1 · 138,517–139,307 bp · +
psbB · MW420953.1 · 73,051–74,577 bp · +
psbT · MW420953.1 · 74,770–74,871 bp · +
psbH · MW420953.1 · 75,180–75,401 bp · +
petB · MW420953.1 · 75,526–76,892 bp · +
petD · MW420953.1 · 77,081–78,283 bp · +
ycf2 · MW420953.1 · 86,692–93,501 bp · +
ycf15 · MW420953.1 · 93,643–93,840 bp · +
trnV-GAC · MW420953.1 · 100,094–100,165 bp · +
rrn16 · MW420953.1 · 100,393–101,883 bp · +
trnI-GAU · MW420953.1 · 102,182–103,201 bp · +
trnA-UGC · MW420953.1 · 103,267–104,147 bp · +
rrn23 · MW420953.1 · 104,317–107,129 bp · +
rrn4.5 · MW420953.1 · 107,228–107,330 bp · +
rrn5 · MW420953.1 · 107,578–107,698 bp · +
trnR-ACG · MW420953.1 · 107,933–108,006 bp · +
trnN-GUU · MW420953.1 · 108,553–108,624 bp · +
rpl32 · MW420953.1 · 112,463–112,639 bp · +
trnL-UAG · MW420953.1 · 113,087–113,166 bp · +
ccsA · MW420953.1 · 113,264–114,238 bp · +
trnN-GUU · MW420953.1 · 128,409–128,480 bp · +
rps7 · MW420953.1 · 139,361–139,828 bp · +
ndhB · MW420953.1 · 140,103–142,314 bp · +
trnL-CAA · MW420953.1 · 142,857–142,937 bp · +
trnI-CAU · MW420953.1 · 150,430–150,503 bp · +
rpl23 · MW420953.1 · 150,652–150,933 bp · +
rpl2 · MW420953.1 · 150,952–152,434 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pekinensis var. maxima
ANNOTATED PLASTOME
MW420953.1
152,530 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38132 76265 114398 152530 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1665 4244 2580 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5147 6307 1161 Locate
trnQ-UUC gene − 7427 7498 72 Locate
psbK gene + 7823 8008 186 Locate
psbI gene + 8399 8509 111 Locate
trnS-GCU gene − 8627 8714 88 Locate
trnG-CGA gene + 9393 10154 762 Locate
trnR-UCU gene + 10329 10400 72 Locate
atpA gene − 10497 12020 1524 Locate
atpF gene − 12094 13321 1228 Locate
atpH gene − 13677 13922 246 Locate
atpI gene − 14930 15673 744 Locate
rps2 gene − 16021 16731 711 Locate
rpoC2 gene − 16943 21148 4206 Locate
rpoC1 gene − 21299 24139 2841 Locate
rpoB gene − 24166 27378 3213 Locate
trnC-GCA gene + 28544 28614 71 Locate
petN gene + 29317 29406 90 Locate
psbM gene − 30423 30527 105 Locate
trnD-GUC gene − 31061 31134 74 Locate
trnY-GUA gene − 31248 31331 84 Locate
trnE-UUC gene − 31391 31463 73 Locate
trnT-GGU gene + 32046 32117 72 Locate
psbD gene + 33427 34488 1062 Locate
psbC gene + 34436 35857 1422 Locate
trnS-UCA gene − 36099 36191 93 Locate
psbZ gene + 36511 36699 189 Locate
trnG-GCC gene + 36971 37041 71 Locate
trnfM-CAU gene − 37194 37267 74 Locate
rps14 gene − 37417 37719 303 Locate
psaB gene − 37847 40051 2205 Locate
psaA gene − 40077 42329 2253 Locate
ycf3 gene − 42999 44922 1924 Locate
trnS-GGA gene + 45809 45895 87 Locate
rps4 gene − 46181 46786 606 Locate
trnT-UGU gene − 47131 47203 73 Locate
trnL-UAA gene + 47881 48450 570 Locate
trnF-GAA gene + 48754 48826 73 Locate
ndhJ gene − 49475 49951 477 Locate
ndhK gene − 50059 50736 678 Locate
ndhC gene − 50789 51151 363 Locate
trnV-UAC gene − 52120 52772 653 Locate
trnM-CAU gene + 52954 53026 73 Locate
atpE gene − 53236 53637 402 Locate
atpB gene − 53634 55121 1488 Locate
rbcL gene + 55903 57345 1443 Locate
accD gene + 58067 59533 1467 Locate
psaI gene + 60250 60360 111 Locate
ycf4 gene + 60794 61348 555 Locate
cemA gene + 62030 62689 660 Locate
petA gene + 62896 63858 963 Locate
pabJ gene − 64889 65011 123 Locate
psbL gene − 65145 65261 117 Locate
psbF gene − 65285 65404 120 Locate
psbE gene − 65419 65670 252 Locate
petL gene + 66579 66674 96 Locate
petG gene + 66850 66963 114 Locate
trnW-CCA gene − 67082 67155 74 Locate
trnP-UGG gene − 67325 67398 74 Locate
psbJ gene + 67671 67805 135 Locate
rpl33 gene + 68282 68482 201 Locate
rps18 gene + 68657 68962 306 Locate
rpl20 gene − 69200 69586 387 Locate
rps12 gene − 70377 70502 126 Locate
clpP gene − 70645 72577 1933 Locate
psbB gene + 73051 74577 1527 Locate
psbT gene + 74770 74871 102 Locate
psbN gene − 74945 75076 132 Locate
psbH gene + 75180 75401 222 Locate
petB gene + 75526 76892 1367 Locate
petD gene + 77081 78283 1203 Locate
rpoA gene − 78446 79459 1014 Locate
rps11 gene − 79531 79947 417 Locate
rpl36 gene − 80049 80162 114 Locate
infA gene − 80258 80491 234 Locate
rps8 gene − 80611 81021 411 Locate
rpl14 gene − 81193 81561 369 Locate
rpl16 gene − 81688 82931 1244 Locate
rps3 gene − 83086 83748 663 Locate
rpl22 gene − 83750 84205 456 Locate
rps19 gene − 84265 84543 279 Locate
rpl2 gene − 84599 86081 1483 Locate
rpl23 gene − 86100 86381 282 Locate
trnI-CAU gene − 86530 86603 74 Locate
ycf2 gene + 86692 93501 6810 Locate
ycf15 gene + 93643 93840 198 Locate
trnL-CAA gene − 94096 94176 81 Locate
ndhB gene − 94719 96930 2212 Locate
rps7 gene − 97205 97672 468 Locate
rps12 gene − 97726 98516 791 Locate
trnV-GAC gene + 100094 100165 72 Locate
rrn16 gene + 100393 101883 1491 Locate
trnI-GAU gene + 102182 103201 1020 Locate
trnA-UGC gene + 103267 104147 881 Locate
rrn23 gene + 104317 107129 2813 Locate
rrn4.5 gene + 107228 107330 103 Locate
rrn5 gene + 107578 107698 121 Locate
trnR-ACG gene + 107933 108006 74 Locate
trnN-GUU gene + 108553 108624 72 Locate
ndhF gene − 109701 111941 2241 Locate
rpl32 gene + 112463 112639 177 Locate
trnL-UAG gene + 113087 113166 80 Locate
ccsA gene + 113264 114238 975 Locate
ndhD gene − 114471 115991 1521 Locate
psaC gene − 116093 116338 246 Locate
ndhE gene − 116595 116900 306 Locate
ndhG gene − 117131 117661 531 Locate
ndhI gene − 118027 118527 501 Locate
ndhA gene − 118608 120707 2100 Locate
ndhH gene − 120709 121890 1182 Locate
rps15 gene − 121994 122266 273 Locate
ycf1 gene − 122533 128079 5547 Locate
trnN-GUU gene + 128409 128480 72 Locate
trnR-ACG gene − 129027 129100 74 Locate
rrn5 gene − 129335 129455 121 Locate
rrn4.5 gene − 129703 129805 103 Locate
rrn23 gene − 129904 132716 2813 Locate
trnA-UGC gene − 132886 133766 881 Locate
trnI-GAU gene − 133832 134851 1020 Locate
rrn16 gene − 135150 136640 1491 Locate
trnV-GAC gene − 136868 136939 72 Locate
rps12 gene + 138517 139307 791 Locate
rps7 gene + 139361 139828 468 Locate
ndhB gene + 140103 142314 2212 Locate
trnL-CAA gene + 142857 142937 81 Locate
ycf15 gene − 143193 143390 198 Locate
ycf2 gene − 143532 150341 6810 Locate
trnI-CAU gene + 150430 150503 74 Locate
rpl23 gene + 150652 150933 282 Locate
rpl2 gene + 150952 152434 1483 Locate
Status Available
Accession MW420953.1
Length 152,530 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources