Scutellaria pekinensis var. pekinensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059333.1 · 12–85 bp · −
psbA · PQ059333.1 · 436–1,494 bp · −
trnK-UUU · PQ059333.1 · 1,736–4,309 bp · −
matK · PQ059333.1 · 2,025–3,554 bp · −
rps16 · PQ059333.1 · 5,186–6,357 bp · −
trnQ-UUG · PQ059333.1 · 7,483–7,554 bp · −
trnS-GCU · PQ059333.1 · 8,675–8,762 bp · −
atpA · PQ059333.1 · 10,486–12,009 bp · −
atpF · PQ059333.1 · 12,099–13,327 bp · −
atpH · PQ059333.1 · 13,691–13,936 bp · −
atpI · PQ059333.1 · 14,911–15,654 bp · −
rps2 · PQ059333.1 · 15,999–16,835 bp · −
rpoC2 · PQ059333.1 · 16,923–21,128 bp · −
rpoC1 · PQ059333.1 · 21,283–24,124 bp · −
rpoB · PQ059333.1 · 24,151–27,363 bp · −
psbM · PQ059333.1 · 30,122–30,226 bp · −
trnD-GUC · PQ059333.1 · 30,753–30,826 bp · −
trnY-GUA · PQ059333.1 · 30,945–31,028 bp · −
trnE-UUC · PQ059333.1 · 31,088–31,160 bp · −
trnS-UGA · PQ059333.1 · 35,786–35,877 bp · −
trnfM-CAU · PQ059333.1 · 36,871–36,944 bp · −
rps14 · PQ059333.1 · 37,094–37,396 bp · −
psaB · PQ059333.1 · 37,524–39,728 bp · −
psaA · PQ059333.1 · 39,754–42,006 bp · −
ycf3 · PQ059333.1 · 42,695–44,617 bp · −
rps4 · PQ059333.1 · 45,881–46,486 bp · −
trnT-UGU · PQ059333.1 · 46,827–46,899 bp · −
ndhJ · PQ059333.1 · 49,194–49,670 bp · −
ndhK · PQ059333.1 · 49,779–50,456 bp · −
ndhC · PQ059333.1 · 50,509–50,871 bp · −
trnV-UAC · PQ059333.1 · 51,813–52,465 bp · −
atpE · PQ059333.1 · 52,935–53,336 bp · −
atpB · PQ059333.1 · 53,333–54,829 bp · −
psbJ · PQ059333.1 · 64,570–64,692 bp · −
psbL · PQ059333.1 · 64,826–65,047 bp · −
psbF · PQ059333.1 · 64,966–65,085 bp · −
psbE · PQ059333.1 · 65,100–65,351 bp · −
trnW-CCA · PQ059333.1 · 66,723–66,796 bp · −
trnP-UGG · PQ059333.1 · 66,966–67,039 bp · −
rpl20 · PQ059333.1 · 68,836–69,222 bp · −
rps12 · PQ059333.1 · 70,007–70,132 bp · −
rps12 · PQ059333.1 · 97,335–98,125 bp · −
clpP · PQ059333.1 · 70,275–72,216 bp · −
psbN · PQ059333.1 · 74,559–74,690 bp · −
rpoA · PQ059333.1 · 78,269–79,069 bp · −
rps11 · PQ059333.1 · 79,141–79,557 bp · −
rpl36 · PQ059333.1 · 79,659–79,772 bp · −
infA · PQ059333.1 · 79,867–80,100 bp · −
rps8 · PQ059333.1 · 80,223–80,633 bp · −
rpl14 · PQ059333.1 · 80,790–81,158 bp · −
rpl16 · PQ059333.1 · 81,285–82,525 bp · −
rps3 · PQ059333.1 · 82,681–83,343 bp · −
rpl22 · PQ059333.1 · 83,345–83,800 bp · −
rps19 · PQ059333.1 · 83,860–84,138 bp · −
rpl2 · PQ059333.1 · 84,194–85,675 bp · −
rpl23 · PQ059333.1 · 85,694–85,975 bp · −
trnI-CAU · PQ059333.1 · 86,135–86,208 bp · −
trnL-CAA · PQ059333.1 · 93,705–93,785 bp · −
ndhB · PQ059333.1 · 94,328–96,539 bp · −
rps7 · PQ059333.1 · 96,814–97,281 bp · −
trnN-GUU · PQ059333.1 · 108,175–108,246 bp · −
ndhF · PQ059333.1 · 109,323–111,563 bp · −
ndhD · PQ059333.1 · 113,919–115,448 bp · −
psaC · PQ059333.1 · 115,550–115,795 bp · −
ndhE · PQ059333.1 · 116,051–116,356 bp · −
ndhG · PQ059333.1 · 116,578–117,108 bp · −
ndhI · PQ059333.1 · 117,472–117,972 bp · −
ndhA · PQ059333.1 · 118,053–120,159 bp · −
ndhH · PQ059333.1 · 120,161–121,342 bp · −
rps15 · PQ059333.1 · 121,439–121,711 bp · −
ycf1 · PQ059333.1 · 121,926–127,571 bp · −
trnR-ACG · PQ059333.1 · 128,418–128,491 bp · −
rrn5 · PQ059333.1 · 128,726–128,846 bp · −
rrn4.5 · PQ059333.1 · 129,094–129,196 bp · −
rrn23 · PQ059333.1 · 129,295–132,106 bp · −
trnA-UGC · PQ059333.1 · 132,281–133,168 bp · −
trnI-GAU · PQ059333.1 · 133,233–134,252 bp · −
ycf68 · PQ059333.1 · 133,804–134,097 bp · −
rrn16 · PQ059333.1 · 134,551–136,041 bp · −
trnV-GAC · PQ059333.1 · 136,268–136,339 bp · −
ycf15 · PQ059333.1 · 142,591–142,788 bp · −
ycf2 · PQ059333.1 · 142,930–149,739 bp · −
psbK · PQ059333.1 · 7,876–8,061 bp · +
psbI · PQ059333.1 · 8,449–8,559 bp · +
trnG-UCC · PQ059333.1 · 9,391–10,143 bp · +
trnR-UCU · PQ059333.1 · 10,318–10,389 bp · +
trnC-GCA · PQ059333.1 · 28,520–28,590 bp · +
petN · PQ059333.1 · 28,892–28,981 bp · +
trnT-GGU · PQ059333.1 · 31,729–31,800 bp · +
psbD · PQ059333.1 · 33,121–34,182 bp · +
psbC · PQ059333.1 · 34,130–35,551 bp · +
psbZ · PQ059333.1 · 36,194–36,382 bp · +
trnG-GCC · PQ059333.1 · 36,654–36,724 bp · +
trnS-GGA · PQ059333.1 · 45,513–45,599 bp · +
trnL-UAA · PQ059333.1 · 47,590–48,165 bp · +
trnF-GAA · PQ059333.1 · 48,475–48,547 bp · +
trnM-CAU · PQ059333.1 · 52,654–52,726 bp · +
rbcL · PQ059333.1 · 55,573–57,036 bp · +
accD · PQ059333.1 · 57,758–59,236 bp · +
psaI · PQ059333.1 · 59,955–60,065 bp · +
ycf4 · PQ059333.1 · 60,499–61,053 bp · +
cemA · PQ059333.1 · 61,796–62,395 bp · +
petA · PQ059333.1 · 62,597–63,559 bp · +
petL · PQ059333.1 · 66,220–66,315 bp · +
petG · PQ059333.1 · 66,491–66,604 bp · +
psaJ · PQ059333.1 · 67,247–67,444 bp · +
rpl33 · PQ059333.1 · 67,921–68,121 bp · +
rps18 · PQ059333.1 · 68,296–68,601 bp · +
rps12 · PQ059333.1 · 137,911–138,701 bp · +
psbB · PQ059333.1 · 72,674–74,200 bp · +
psbT · PQ059333.1 · 74,391–74,498 bp · +
psbH · PQ059333.1 · 74,794–75,015 bp · +
petB · PQ059333.1 · 75,140–76,508 bp · +
petD · PQ059333.1 · 76,697–77,893 bp · +
ycf2 · PQ059333.1 · 86,297–93,106 bp · +
ycf15 · PQ059333.1 · 93,248–93,445 bp · +
trnV-GAC · PQ059333.1 · 99,697–99,768 bp · +
rrn16 · PQ059333.1 · 99,995–101,485 bp · +
trnI-GAU · PQ059333.1 · 101,784–102,803 bp · +
trnA-UGC · PQ059333.1 · 102,868–103,755 bp · +
rrn23 · PQ059333.1 · 103,930–106,741 bp · +
rrn4.5 · PQ059333.1 · 106,840–106,942 bp · +
rrn5 · PQ059333.1 · 107,190–107,310 bp · +
trnR-ACG · PQ059333.1 · 107,545–107,618 bp · +
rpl32 · PQ059333.1 · 112,076–112,252 bp · +
trnL-UAG · PQ059333.1 · 112,538–112,617 bp · +
ccsA · PQ059333.1 · 112,711–113,685 bp · +
trnN-GUU · PQ059333.1 · 127,790–127,861 bp · +
rps7 · PQ059333.1 · 138,755–139,222 bp · +
ndhB · PQ059333.1 · 139,497–141,708 bp · +
trnL-CAA · PQ059333.1 · 142,251–142,331 bp · +
trnI-CAU · PQ059333.1 · 149,828–149,901 bp · +
rpl23 · PQ059333.1 · 150,061–150,342 bp · +
rpl2 · PQ059333.1 · 150,361–151,842 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pekinensis var. pekinensis
ANNOTATED PLASTOME
PQ059333.1
151,972 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37993 75986 113979 151972 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 436 1494 1059 Locate
trnK-UUU gene − 1736 4309 2574 Locate
matK gene − 2025 3554 1530 Locate
rps16 gene − 5186 6357 1172 Locate
trnQ-UUG gene − 7483 7554 72 Locate
psbK gene + 7876 8061 186 Locate
psbI gene + 8449 8559 111 Locate
trnS-GCU gene − 8675 8762 88 Locate
trnG-UCC gene + 9391 10143 753 Locate
trnR-UCU gene + 10318 10389 72 Locate
atpA gene − 10486 12009 1524 Locate
atpF gene − 12099 13327 1229 Locate
atpH gene − 13691 13936 246 Locate
atpI gene − 14911 15654 744 Locate
rps2 gene − 15999 16835 837 Locate
rpoC2 gene − 16923 21128 4206 Locate
rpoC1 gene − 21283 24124 2842 Locate
rpoB gene − 24151 27363 3213 Locate
trnC-GCA gene + 28520 28590 71 Locate
petN gene + 28892 28981 90 Locate
psbM gene − 30122 30226 105 Locate
trnD-GUC gene − 30753 30826 74 Locate
trnY-GUA gene − 30945 31028 84 Locate
trnE-UUC gene − 31088 31160 73 Locate
trnT-GGU gene + 31729 31800 72 Locate
psbD gene + 33121 34182 1062 Locate
psbC gene + 34130 35551 1422 Locate
trnS-UGA gene − 35786 35877 92 Locate
psbZ gene + 36194 36382 189 Locate
trnG-GCC gene + 36654 36724 71 Locate
trnfM-CAU gene − 36871 36944 74 Locate
rps14 gene − 37094 37396 303 Locate
psaB gene − 37524 39728 2205 Locate
psaA gene − 39754 42006 2253 Locate
ycf3 gene − 42695 44617 1923 Locate
trnS-GGA gene + 45513 45599 87 Locate
rps4 gene − 45881 46486 606 Locate
trnT-UGU gene − 46827 46899 73 Locate
trnL-UAA gene + 47590 48165 576 Locate
trnF-GAA gene + 48475 48547 73 Locate
ndhJ gene − 49194 49670 477 Locate
ndhK gene − 49779 50456 678 Locate
ndhC gene − 50509 50871 363 Locate
trnV-UAC gene − 51813 52465 653 Locate
trnM-CAU gene + 52654 52726 73 Locate
atpE gene − 52935 53336 402 Locate
atpB gene − 53333 54829 1497 Locate
rbcL gene + 55573 57036 1464 Locate
accD gene + 57758 59236 1479 Locate
psaI gene + 59955 60065 111 Locate
ycf4 gene + 60499 61053 555 Locate
cemA gene + 61796 62395 600 Locate
petA gene + 62597 63559 963 Locate
psbJ gene − 64570 64692 123 Locate
psbL gene − 64826 65047 222 Locate
psbF gene − 64966 65085 120 Locate
psbE gene − 65100 65351 252 Locate
petL gene + 66220 66315 96 Locate
petG gene + 66491 66604 114 Locate
trnW-CCA gene − 66723 66796 74 Locate
trnP-UGG gene − 66966 67039 74 Locate
psaJ gene + 67247 67444 198 Locate
rpl33 gene + 67921 68121 201 Locate
rps18 gene + 68296 68601 306 Locate
rpl20 gene − 68836 69222 387 Locate
rps12 gene − 70007 70132 126 Locate
clpP gene − 70275 72216 1942 Locate
psbB gene + 72674 74200 1527 Locate
psbT gene + 74391 74498 108 Locate
psbN gene − 74559 74690 132 Locate
psbH gene + 74794 75015 222 Locate
petB gene + 75140 76508 1369 Locate
petD gene + 76697 77893 1197 Locate
rpoA gene − 78269 79069 801 Locate
rps11 gene − 79141 79557 417 Locate
rpl36 gene − 79659 79772 114 Locate
infA gene − 79867 80100 234 Locate
rps8 gene − 80223 80633 411 Locate
rpl14 gene − 80790 81158 369 Locate
rpl16 gene − 81285 82525 1241 Locate
rps3 gene − 82681 83343 663 Locate
rpl22 gene − 83345 83800 456 Locate
rps19 gene − 83860 84138 279 Locate
rpl2 gene − 84194 85675 1482 Locate
rpl23 gene − 85694 85975 282 Locate
trnI-CAU gene − 86135 86208 74 Locate
ycf2 gene + 86297 93106 6810 Locate
ycf15 gene + 93248 93445 198 Locate
trnL-CAA gene − 93705 93785 81 Locate
ndhB gene − 94328 96539 2212 Locate
rps7 gene − 96814 97281 468 Locate
rps12 gene − 97335 98125 791 Locate
trnV-GAC gene + 99697 99768 72 Locate
rrn16 gene + 99995 101485 1491 Locate
trnI-GAU gene + 101784 102803 1020 Locate
trnA-UGC gene + 102868 103755 888 Locate
rrn23 gene + 103930 106741 2812 Locate
rrn4.5 gene + 106840 106942 103 Locate
rrn5 gene + 107190 107310 121 Locate
trnR-ACG gene + 107545 107618 74 Locate
trnN-GUU gene − 108175 108246 72 Locate
ndhF gene − 109323 111563 2241 Locate
rpl32 gene + 112076 112252 177 Locate
trnL-UAG gene + 112538 112617 80 Locate
ccsA gene + 112711 113685 975 Locate
ndhD gene − 113919 115448 1530 Locate
psaC gene − 115550 115795 246 Locate
ndhE gene − 116051 116356 306 Locate
ndhG gene − 116578 117108 531 Locate
ndhI gene − 117472 117972 501 Locate
ndhA gene − 118053 120159 2107 Locate
ndhH gene − 120161 121342 1182 Locate
rps15 gene − 121439 121711 273 Locate
ycf1 gene − 121926 127571 5646 Locate
trnN-GUU gene + 127790 127861 72 Locate
trnR-ACG gene − 128418 128491 74 Locate
rrn5 gene − 128726 128846 121 Locate
rrn4.5 gene − 129094 129196 103 Locate
rrn23 gene − 129295 132106 2812 Locate
trnA-UGC gene − 132281 133168 888 Locate
trnI-GAU gene − 133233 134252 1020 Locate
ycf68 gene − 133804 134097 294 Locate
rrn16 gene − 134551 136041 1491 Locate
trnV-GAC gene − 136268 136339 72 Locate
rps12 gene + 137911 138701 791 Locate
rps7 gene + 138755 139222 468 Locate
ndhB gene + 139497 141708 2212 Locate
trnL-CAA gene + 142251 142331 81 Locate
ycf15 gene − 142591 142788 198 Locate
ycf2 gene − 142930 149739 6810 Locate
trnI-CAU gene + 149828 149901 74 Locate
rpl23 gene + 150061 150342 282 Locate
rpl2 gene + 150361 151842 1482 Locate
Status Available
Accession PQ059333.1
Length 151,972 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources