Scutellaria pekinensis var. purpureicaulis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059331.1 · 3–76 bp · −
psbA · PQ059331.1 · 369–1,427 bp · −
trnK-UUU · PQ059331.1 · 1,661–4,248 bp · −
matK · PQ059331.1 · 1,956–3,491 bp · −
rps16 · PQ059331.1 · 5,147–6,308 bp · −
trnQ-UUG · PQ059331.1 · 7,428–7,499 bp · −
trnS-GCU · PQ059331.1 · 8,629–8,716 bp · −
atpA · PQ059331.1 · 10,499–12,022 bp · −
atpF · PQ059331.1 · 12,096–13,323 bp · −
atpH · PQ059331.1 · 13,679–13,924 bp · −
atpI · PQ059331.1 · 14,932–15,675 bp · −
rps2 · PQ059331.1 · 16,023–16,733 bp · −
rpoC2 · PQ059331.1 · 16,945–21,150 bp · −
rpoC1 · PQ059331.1 · 21,301–24,141 bp · −
rpoB · PQ059331.1 · 24,168–27,380 bp · −
psbM · PQ059331.1 · 30,427–30,531 bp · −
trnD-GUC · PQ059331.1 · 31,065–31,138 bp · −
trnY-GUA · PQ059331.1 · 31,252–31,335 bp · −
trnE-UUC · PQ059331.1 · 31,395–31,467 bp · −
trnS-UGA · PQ059331.1 · 36,104–36,195 bp · −
trnfM-CAU · PQ059331.1 · 37,198–37,271 bp · −
rps14 · PQ059331.1 · 37,421–37,723 bp · −
psaB · PQ059331.1 · 37,851–40,055 bp · −
psaA · PQ059331.1 · 40,081–42,333 bp · −
ycf3 · PQ059331.1 · 43,003–44,926 bp · −
rps4 · PQ059331.1 · 46,184–46,789 bp · −
trnT-UGU · PQ059331.1 · 47,134–47,206 bp · −
ndhJ · PQ059331.1 · 49,478–49,954 bp · −
ndhK · PQ059331.1 · 50,062–50,739 bp · −
ndhC · PQ059331.1 · 50,792–51,154 bp · −
trnV-UAC · PQ059331.1 · 52,123–52,775 bp · −
atpE · PQ059331.1 · 53,239–53,640 bp · −
atpB · PQ059331.1 · 53,637–55,124 bp · −
psbJ · PQ059331.1 · 64,892–65,014 bp · −
psbL · PQ059331.1 · 65,148–65,264 bp · −
psbF · PQ059331.1 · 65,288–65,407 bp · −
psbE · PQ059331.1 · 65,422–65,673 bp · −
trnW-CCA · PQ059331.1 · 67,085–67,158 bp · −
trnP-UGG · PQ059331.1 · 67,328–67,401 bp · −
rpl20 · PQ059331.1 · 69,203–69,589 bp · −
rps12 · PQ059331.1 · 70,398–70,511 bp · −
rps12 · PQ059331.1 · 97,736–98,526 bp · −
clpP · PQ059331.1 · 70,654–72,586 bp · −
psbN · PQ059331.1 · 74,954–75,085 bp · −
rpoA · PQ059331.1 · 78,455–79,468 bp · −
rps11 · PQ059331.1 · 79,540–79,956 bp · −
rpl36 · PQ059331.1 · 80,058–80,171 bp · −
infA · PQ059331.1 · 80,267–80,500 bp · −
rps8 · PQ059331.1 · 80,620–81,030 bp · −
rpl14 · PQ059331.1 · 81,203–81,571 bp · −
rpl16 · PQ059331.1 · 81,698–82,941 bp · −
rps3 · PQ059331.1 · 83,096–83,758 bp · −
rpl22 · PQ059331.1 · 83,760–84,215 bp · −
rps19 · PQ059331.1 · 84,275–84,553 bp · −
rpl2 · PQ059331.1 · 84,609–86,091 bp · −
rpl23 · PQ059331.1 · 86,110–86,391 bp · −
trnI-CAU · PQ059331.1 · 86,540–86,613 bp · −
trnL-CAA · PQ059331.1 · 94,106–94,186 bp · −
ndhB · PQ059331.1 · 94,729–96,886 bp · −
rps7 · PQ059331.1 · 97,215–97,682 bp · −
trnN-GUU · PQ059331.1 · 108,562–108,633 bp · −
ndhF · PQ059331.1 · 109,710–111,950 bp · −
ndhD · PQ059331.1 · 114,478–116,001 bp · −
psaC · PQ059331.1 · 116,100–116,345 bp · −
ndhE · PQ059331.1 · 116,602–116,907 bp · −
ndhG · PQ059331.1 · 117,138–117,668 bp · −
ndhI · PQ059331.1 · 118,034–118,534 bp · −
ndhA · PQ059331.1 · 118,615–120,714 bp · −
ndhH · PQ059331.1 · 120,716–121,897 bp · −
rps15 · PQ059331.1 · 122,001–122,333 bp · −
ycf1 · PQ059331.1 · 122,540–128,197 bp · −
trnR-ACG · PQ059331.1 · 129,034–129,107 bp · −
rrn5 · PQ059331.1 · 129,342–129,462 bp · −
rrn4.5 · PQ059331.1 · 129,710–129,812 bp · −
rrn23 · PQ059331.1 · 129,911–132,723 bp · −
trnA-UGC · PQ059331.1 · 132,893–133,772 bp · −
trnI-GAU · PQ059331.1 · 133,837–134,857 bp · −
ycf68 · PQ059331.1 · 134,463–134,702 bp · −
rrn16 · PQ059331.1 · 135,156–136,646 bp · −
trnV-GAC · PQ059331.1 · 136,874–136,945 bp · −
ycf15 · PQ059331.1 · 143,199–143,396 bp · −
ycf2 · PQ059331.1 · 143,538–150,347 bp · −
psbK · PQ059331.1 · 7,824–8,009 bp · +
psbI · PQ059331.1 · 8,400–8,510 bp · +
trnG-UCC · PQ059331.1 · 9,395–10,156 bp · +
trnR-UCU · PQ059331.1 · 10,331–10,402 bp · +
trnC-GCA · PQ059331.1 · 28,547–28,617 bp · +
petN · PQ059331.1 · 29,321–29,410 bp · +
trnT-GGU · PQ059331.1 · 32,050–32,121 bp · +
psbD · PQ059331.1 · 33,431–34,492 bp · +
psbC · PQ059331.1 · 34,440–35,861 bp · +
psbZ · PQ059331.1 · 36,515–36,703 bp · +
trnG-GCC · PQ059331.1 · 36,975–37,045 bp · +
trnS-GGA · PQ059331.1 · 45,812–45,898 bp · +
trnL-UAA · PQ059331.1 · 47,884–48,452 bp · +
trnF-GAA · PQ059331.1 · 48,757–48,829 bp · +
trnM-CAU · PQ059331.1 · 52,957–53,029 bp · +
rbcL · PQ059331.1 · 55,885–57,348 bp · +
accD · PQ059331.1 · 58,070–59,536 bp · +
psaI · PQ059331.1 · 60,253–60,363 bp · +
ycf4 · PQ059331.1 · 60,797–61,351 bp · +
cemA · PQ059331.1 · 62,093–62,692 bp · +
petA · PQ059331.1 · 62,899–63,861 bp · +
petL · PQ059331.1 · 66,582–66,677 bp · +
petG · PQ059331.1 · 66,853–66,966 bp · +
psaJ · PQ059331.1 · 67,674–67,808 bp · +
rpl33 · PQ059331.1 · 68,285–68,485 bp · +
rps18 · PQ059331.1 · 68,660–68,965 bp · +
rps12 · PQ059331.1 · 138,523–139,313 bp · +
psbB · PQ059331.1 · 73,060–74,586 bp · +
psbT · PQ059331.1 · 74,779–74,880 bp · +
psbH · PQ059331.1 · 75,189–75,410 bp · +
petB · PQ059331.1 · 75,535–76,901 bp · +
petD · PQ059331.1 · 77,090–78,292 bp · +
ycf2 · PQ059331.1 · 86,702–93,511 bp · +
ycf15 · PQ059331.1 · 93,653–93,850 bp · +
trnV-GAC · PQ059331.1 · 100,104–100,175 bp · +
rrn16 · PQ059331.1 · 100,403–101,893 bp · +
trnI-GAU · PQ059331.1 · 102,192–103,212 bp · +
trnA-UGC · PQ059331.1 · 103,277–104,156 bp · +
rrn23 · PQ059331.1 · 104,326–107,138 bp · +
rrn4.5 · PQ059331.1 · 107,237–107,339 bp · +
rrn5 · PQ059331.1 · 107,587–107,707 bp · +
trnR-ACG · PQ059331.1 · 107,942–108,015 bp · +
rpl32 · PQ059331.1 · 112,472–112,648 bp · +
trnL-UAG · PQ059331.1 · 113,094–113,173 bp · +
ccsA · PQ059331.1 · 113,271–114,245 bp · +
trnN-GUU · PQ059331.1 · 128,416–128,487 bp · +
rps7 · PQ059331.1 · 139,367–139,834 bp · +
ndhB · PQ059331.1 · 140,163–142,320 bp · +
trnL-CAA · PQ059331.1 · 142,863–142,943 bp · +
trnI-CAU · PQ059331.1 · 150,436–150,509 bp · +
rpl23 · PQ059331.1 · 150,658–150,939 bp · +
rpl2 · PQ059331.1 · 150,958–152,440 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pekinensis var. purpureicaulis
ANNOTATED PLASTOME
PQ059331.1
152,536 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38134 76268 114402 152536 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1661 4248 2588 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5147 6308 1162 Locate
trnQ-UUG gene − 7428 7499 72 Locate
psbK gene + 7824 8009 186 Locate
psbI gene + 8400 8510 111 Locate
trnS-GCU gene − 8629 8716 88 Locate
trnG-UCC gene + 9395 10156 762 Locate
trnR-UCU gene + 10331 10402 72 Locate
atpA gene − 10499 12022 1524 Locate
atpF gene − 12096 13323 1228 Locate
atpH gene − 13679 13924 246 Locate
atpI gene − 14932 15675 744 Locate
rps2 gene − 16023 16733 711 Locate
rpoC2 gene − 16945 21150 4206 Locate
rpoC1 gene − 21301 24141 2841 Locate
rpoB gene − 24168 27380 3213 Locate
trnC-GCA gene + 28547 28617 71 Locate
petN gene + 29321 29410 90 Locate
psbM gene − 30427 30531 105 Locate
trnD-GUC gene − 31065 31138 74 Locate
trnY-GUA gene − 31252 31335 84 Locate
trnE-UUC gene − 31395 31467 73 Locate
trnT-GGU gene + 32050 32121 72 Locate
psbD gene + 33431 34492 1062 Locate
psbC gene + 34440 35861 1422 Locate
trnS-UGA gene − 36104 36195 92 Locate
psbZ gene + 36515 36703 189 Locate
trnG-GCC gene + 36975 37045 71 Locate
trnfM-CAU gene − 37198 37271 74 Locate
rps14 gene − 37421 37723 303 Locate
psaB gene − 37851 40055 2205 Locate
psaA gene − 40081 42333 2253 Locate
ycf3 gene − 43003 44926 1924 Locate
trnS-GGA gene + 45812 45898 87 Locate
rps4 gene − 46184 46789 606 Locate
trnT-UGU gene − 47134 47206 73 Locate
trnL-UAA gene + 47884 48452 569 Locate
trnF-GAA gene + 48757 48829 73 Locate
ndhJ gene − 49478 49954 477 Locate
ndhK gene − 50062 50739 678 Locate
ndhC gene − 50792 51154 363 Locate
trnV-UAC gene − 52123 52775 653 Locate
trnM-CAU gene + 52957 53029 73 Locate
atpE gene − 53239 53640 402 Locate
atpB gene − 53637 55124 1488 Locate
rbcL gene + 55885 57348 1464 Locate
accD gene + 58070 59536 1467 Locate
psaI gene + 60253 60363 111 Locate
ycf4 gene + 60797 61351 555 Locate
cemA gene + 62093 62692 600 Locate
petA gene + 62899 63861 963 Locate
psbJ gene − 64892 65014 123 Locate
psbL gene − 65148 65264 117 Locate
psbF gene − 65288 65407 120 Locate
psbE gene − 65422 65673 252 Locate
petL gene + 66582 66677 96 Locate
petG gene + 66853 66966 114 Locate
trnW-CCA gene − 67085 67158 74 Locate
trnP-UGG gene − 67328 67401 74 Locate
psaJ gene + 67674 67808 135 Locate
rpl33 gene + 68285 68485 201 Locate
rps18 gene + 68660 68965 306 Locate
rpl20 gene − 69203 69589 387 Locate
rps12 gene − 70398 70511 114 Locate
clpP gene − 70654 72586 1933 Locate
psbB gene + 73060 74586 1527 Locate
psbT gene + 74779 74880 102 Locate
psbN gene − 74954 75085 132 Locate
psbH gene + 75189 75410 222 Locate
petB gene + 75535 76901 1367 Locate
petD gene + 77090 78292 1203 Locate
rpoA gene − 78455 79468 1014 Locate
rps11 gene − 79540 79956 417 Locate
rpl36 gene − 80058 80171 114 Locate
infA gene − 80267 80500 234 Locate
rps8 gene − 80620 81030 411 Locate
rpl14 gene − 81203 81571 369 Locate
rpl16 gene − 81698 82941 1244 Locate
rps3 gene − 83096 83758 663 Locate
rpl22 gene − 83760 84215 456 Locate
rps19 gene − 84275 84553 279 Locate
rpl2 gene − 84609 86091 1483 Locate
rpl23 gene − 86110 86391 282 Locate
trnI-CAU gene − 86540 86613 74 Locate
ycf2 gene + 86702 93511 6810 Locate
ycf15 gene + 93653 93850 198 Locate
trnL-CAA gene − 94106 94186 81 Locate
ndhB gene − 94729 96886 2158 Locate
rps7 gene − 97215 97682 468 Locate
rps12 gene − 97736 98526 791 Locate
trnV-GAC gene + 100104 100175 72 Locate
rrn16 gene + 100403 101893 1491 Locate
trnI-GAU gene + 102192 103212 1021 Locate
trnA-UGC gene + 103277 104156 880 Locate
rrn23 gene + 104326 107138 2813 Locate
rrn4.5 gene + 107237 107339 103 Locate
rrn5 gene + 107587 107707 121 Locate
trnR-ACG gene + 107942 108015 74 Locate
trnN-GUU gene − 108562 108633 72 Locate
ndhF gene − 109710 111950 2241 Locate
rpl32 gene + 112472 112648 177 Locate
trnL-UAG gene + 113094 113173 80 Locate
ccsA gene + 113271 114245 975 Locate
ndhD gene − 114478 116001 1524 Locate
psaC gene − 116100 116345 246 Locate
ndhE gene − 116602 116907 306 Locate
ndhG gene − 117138 117668 531 Locate
ndhI gene − 118034 118534 501 Locate
ndhA gene − 118615 120714 2100 Locate
ndhH gene − 120716 121897 1182 Locate
rps15 gene − 122001 122333 333 Locate
ycf1 gene − 122540 128197 5658 Locate
trnN-GUU gene + 128416 128487 72 Locate
trnR-ACG gene − 129034 129107 74 Locate
rrn5 gene − 129342 129462 121 Locate
rrn4.5 gene − 129710 129812 103 Locate
rrn23 gene − 129911 132723 2813 Locate
trnA-UGC gene − 132893 133772 880 Locate
trnI-GAU gene − 133837 134857 1021 Locate
ycf68 gene − 134463 134702 240 Locate
rrn16 gene − 135156 136646 1491 Locate
trnV-GAC gene − 136874 136945 72 Locate
rps12 gene + 138523 139313 791 Locate
rps7 gene + 139367 139834 468 Locate
ndhB gene + 140163 142320 2158 Locate
trnL-CAA gene + 142863 142943 81 Locate
ycf15 gene − 143199 143396 198 Locate
ycf2 gene − 143538 150347 6810 Locate
trnI-CAU gene + 150436 150509 74 Locate
rpl23 gene + 150658 150939 282 Locate
rpl2 gene + 150958 152440 1483 Locate
Status Available
Accession PQ059331.1
Length 152,536 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources