Scutellaria pekinensis var. transitra chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059299.1 · 3–76 bp · −
psbA · PQ059299.1 · 380–1,438 bp · −
trnK-UUU · PQ059299.1 · 1,672–4,259 bp · −
matK · PQ059299.1 · 1,967–3,502 bp · −
rps16 · PQ059299.1 · 5,158–6,318 bp · −
trnQ-UUG · PQ059299.1 · 7,435–7,506 bp · −
trnS-GCU · PQ059299.1 · 8,636–8,723 bp · −
atpA · PQ059299.1 · 10,506–12,029 bp · −
atpF · PQ059299.1 · 12,112–13,339 bp · −
atpH · PQ059299.1 · 13,698–13,943 bp · −
atpI · PQ059299.1 · 14,943–15,686 bp · −
rps2 · PQ059299.1 · 16,034–16,744 bp · −
rpoC2 · PQ059299.1 · 16,956–21,161 bp · −
rpoC1 · PQ059299.1 · 21,312–24,152 bp · −
rpoB · PQ059299.1 · 24,179–27,391 bp · −
psbM · PQ059299.1 · 30,427–30,540 bp · −
trnD-GUC · PQ059299.1 · 31,074–31,147 bp · −
trnY-GUA · PQ059299.1 · 31,261–31,344 bp · −
trnE-UUC · PQ059299.1 · 31,404–31,476 bp · −
trnS-UGA · PQ059299.1 · 36,104–36,195 bp · −
trnfM-CAU · PQ059299.1 · 37,198–37,271 bp · −
rps14 · PQ059299.1 · 37,421–37,723 bp · −
psaB · PQ059299.1 · 37,851–40,055 bp · −
psaA · PQ059299.1 · 40,081–42,333 bp · −
ycf3 · PQ059299.1 · 43,001–44,924 bp · −
rps4 · PQ059299.1 · 46,182–46,787 bp · −
trnT-UGU · PQ059299.1 · 47,132–47,204 bp · −
ndhJ · PQ059299.1 · 49,440–49,916 bp · −
ndhK · PQ059299.1 · 50,024–50,701 bp · −
ndhC · PQ059299.1 · 50,754–51,116 bp · −
trnV-UAC · PQ059299.1 · 52,085–52,737 bp · −
atpE · PQ059299.1 · 53,201–53,602 bp · −
atpB · PQ059299.1 · 53,599–55,086 bp · −
psbJ · PQ059299.1 · 64,856–64,978 bp · −
psbL · PQ059299.1 · 65,112–65,333 bp · −
psbF · PQ059299.1 · 65,252–65,371 bp · −
psbE · PQ059299.1 · 65,386–65,637 bp · −
trnW-CCA · PQ059299.1 · 67,049–67,122 bp · −
trnP-UGG · PQ059299.1 · 67,292–67,365 bp · −
rpl20 · PQ059299.1 · 69,166–69,552 bp · −
rps12 · PQ059299.1 · 70,349–70,474 bp · −
rps12 · PQ059299.1 · 97,687–98,477 bp · −
clpP · PQ059299.1 · 70,617–72,549 bp · −
psbN · PQ059299.1 · 74,917–75,048 bp · −
rpoA · PQ059299.1 · 78,418–79,431 bp · −
rps11 · PQ059299.1 · 79,503–79,919 bp · −
rpl36 · PQ059299.1 · 80,021–80,134 bp · −
infA · PQ059299.1 · 80,230–80,463 bp · −
rps8 · PQ059299.1 · 80,583–80,993 bp · −
rpl14 · PQ059299.1 · 81,161–81,529 bp · −
rpl16 · PQ059299.1 · 81,656–82,899 bp · −
rps3 · PQ059299.1 · 83,054–83,716 bp · −
rpl22 · PQ059299.1 · 83,718–84,173 bp · −
rps19 · PQ059299.1 · 84,233–84,511 bp · −
rpl2 · PQ059299.1 · 84,567–86,049 bp · −
rpl23 · PQ059299.1 · 86,068–86,349 bp · −
trnI-CAU · PQ059299.1 · 86,498–86,571 bp · −
trnL-CAA · PQ059299.1 · 94,057–94,137 bp · −
ndhB · PQ059299.1 · 94,680–96,837 bp · −
rps7 · PQ059299.1 · 97,166–97,633 bp · −
trnN-GUU · PQ059299.1 · 108,514–108,585 bp · −
ndhF · PQ059299.1 · 109,662–111,902 bp · −
ndhD · PQ059299.1 · 114,425–115,927 bp · −
psaC · PQ059299.1 · 116,047–116,292 bp · −
ndhE · PQ059299.1 · 116,549–116,854 bp · −
ndhG · PQ059299.1 · 117,085–117,615 bp · −
ndhI · PQ059299.1 · 117,981–118,481 bp · −
ndhA · PQ059299.1 · 118,562–120,661 bp · −
ndhH · PQ059299.1 · 120,663–121,844 bp · −
rps15 · PQ059299.1 · 121,948–122,220 bp · −
ycf1 · PQ059299.1 · 122,487–128,132 bp · −
trnR-ACG · PQ059299.1 · 128,969–129,042 bp · −
rrn5 · PQ059299.1 · 129,277–129,397 bp · −
rrn4.5 · PQ059299.1 · 129,645–129,747 bp · −
rrn23 · PQ059299.1 · 129,846–132,658 bp · −
trnA-UGC · PQ059299.1 · 132,828–133,708 bp · −
trnI-GAU · PQ059299.1 · 133,773–134,793 bp · −
ycf68 · PQ059299.1 · 134,399–134,638 bp · −
rrn16 · PQ059299.1 · 135,092–136,582 bp · −
trnV-GAC · PQ059299.1 · 136,810–136,881 bp · −
ycf15 · PQ059299.1 · 143,128–143,376 bp · −
ycf2 · PQ059299.1 · 143,467–150,276 bp · −
psbK · PQ059299.1 · 7,831–8,016 bp · +
psbI · PQ059299.1 · 8,407–8,517 bp · +
trnG-UCC · PQ059299.1 · 9,402–10,163 bp · +
trnR-UCU · PQ059299.1 · 10,338–10,409 bp · +
trnC-GCA · PQ059299.1 · 28,557–28,627 bp · +
petN · PQ059299.1 · 29,330–29,419 bp · +
trnT-GGU · PQ059299.1 · 32,059–32,130 bp · +
psbD · PQ059299.1 · 33,440–34,501 bp · +
psbC · PQ059299.1 · 34,449–35,870 bp · +
psbZ · PQ059299.1 · 36,515–36,703 bp · +
trnG-GCC · PQ059299.1 · 36,975–37,045 bp · +
trnS-GGA · PQ059299.1 · 45,810–45,896 bp · +
trnL-UAA · PQ059299.1 · 47,846–48,414 bp · +
trnF-GAA · PQ059299.1 · 48,719–48,791 bp · +
trnM-CAU · PQ059299.1 · 52,919–52,991 bp · +
rbcL · PQ059299.1 · 55,847–57,310 bp · +
accD · PQ059299.1 · 58,040–59,506 bp · +
psaI · PQ059299.1 · 60,223–60,333 bp · +
ycf4 · PQ059299.1 · 60,767–61,321 bp · +
cemA · PQ059299.1 · 62,063–62,662 bp · +
petA · PQ059299.1 · 62,869–63,831 bp · +
petL · PQ059299.1 · 66,546–66,641 bp · +
petG · PQ059299.1 · 66,817–66,930 bp · +
psaJ · PQ059299.1 · 67,638–67,772 bp · +
rpl33 · PQ059299.1 · 68,249–68,449 bp · +
rps18 · PQ059299.1 · 68,624–68,929 bp · +
rps12 · PQ059299.1 · 138,459–139,249 bp · +
psbB · PQ059299.1 · 73,023–74,549 bp · +
psbT · PQ059299.1 · 74,742–74,843 bp · +
psbH · PQ059299.1 · 75,152–75,373 bp · +
petB · PQ059299.1 · 75,498–76,864 bp · +
petD · PQ059299.1 · 77,053–78,255 bp · +
ycf2 · PQ059299.1 · 86,660–93,469 bp · +
ycf15 · PQ059299.1 · 93,560–93,808 bp · +
trnV-GAC · PQ059299.1 · 100,055–100,126 bp · +
rrn16 · PQ059299.1 · 100,354–101,844 bp · +
trnI-GAU · PQ059299.1 · 102,143–103,163 bp · +
trnA-UGC · PQ059299.1 · 103,228–104,108 bp · +
rrn23 · PQ059299.1 · 104,278–107,090 bp · +
rrn4.5 · PQ059299.1 · 107,189–107,291 bp · +
rrn5 · PQ059299.1 · 107,539–107,659 bp · +
trnR-ACG · PQ059299.1 · 107,894–107,967 bp · +
rpl32 · PQ059299.1 · 112,424–112,600 bp · +
trnL-UAG · PQ059299.1 · 113,041–113,120 bp · +
ccsA · PQ059299.1 · 113,218–114,192 bp · +
trnN-GUU · PQ059299.1 · 128,351–128,422 bp · +
rps7 · PQ059299.1 · 139,303–139,770 bp · +
ndhB · PQ059299.1 · 140,099–142,256 bp · +
trnL-CAA · PQ059299.1 · 142,799–142,879 bp · +
trnI-CAU · PQ059299.1 · 150,365–150,438 bp · +
rpl23 · PQ059299.1 · 150,587–150,868 bp · +
rpl2 · PQ059299.1 · 150,887–152,369 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pekinensis var. transitra
ANNOTATED PLASTOME
PQ059299.1
152,465 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38116 76232 114349 152465 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 380 1438 1059 Locate
trnK-UUU gene − 1672 4259 2588 Locate
matK gene − 1967 3502 1536 Locate
rps16 gene − 5158 6318 1161 Locate
trnQ-UUG gene − 7435 7506 72 Locate
psbK gene + 7831 8016 186 Locate
psbI gene + 8407 8517 111 Locate
trnS-GCU gene − 8636 8723 88 Locate
trnG-UCC gene + 9402 10163 762 Locate
trnR-UCU gene + 10338 10409 72 Locate
atpA gene − 10506 12029 1524 Locate
atpF gene − 12112 13339 1228 Locate
atpH gene − 13698 13943 246 Locate
atpI gene − 14943 15686 744 Locate
rps2 gene − 16034 16744 711 Locate
rpoC2 gene − 16956 21161 4206 Locate
rpoC1 gene − 21312 24152 2841 Locate
rpoB gene − 24179 27391 3213 Locate
trnC-GCA gene + 28557 28627 71 Locate
petN gene + 29330 29419 90 Locate
psbM gene − 30427 30540 114 Locate
trnD-GUC gene − 31074 31147 74 Locate
trnY-GUA gene − 31261 31344 84 Locate
trnE-UUC gene − 31404 31476 73 Locate
trnT-GGU gene + 32059 32130 72 Locate
psbD gene + 33440 34501 1062 Locate
psbC gene + 34449 35870 1422 Locate
trnS-UGA gene − 36104 36195 92 Locate
psbZ gene + 36515 36703 189 Locate
trnG-GCC gene + 36975 37045 71 Locate
trnfM-CAU gene − 37198 37271 74 Locate
rps14 gene − 37421 37723 303 Locate
psaB gene − 37851 40055 2205 Locate
psaA gene − 40081 42333 2253 Locate
ycf3 gene − 43001 44924 1924 Locate
trnS-GGA gene + 45810 45896 87 Locate
rps4 gene − 46182 46787 606 Locate
trnT-UGU gene − 47132 47204 73 Locate
trnL-UAA gene + 47846 48414 569 Locate
trnF-GAA gene + 48719 48791 73 Locate
ndhJ gene − 49440 49916 477 Locate
ndhK gene − 50024 50701 678 Locate
ndhC gene − 50754 51116 363 Locate
trnV-UAC gene − 52085 52737 653 Locate
trnM-CAU gene + 52919 52991 73 Locate
atpE gene − 53201 53602 402 Locate
atpB gene − 53599 55086 1488 Locate
rbcL gene + 55847 57310 1464 Locate
accD gene + 58040 59506 1467 Locate
psaI gene + 60223 60333 111 Locate
ycf4 gene + 60767 61321 555 Locate
cemA gene + 62063 62662 600 Locate
petA gene + 62869 63831 963 Locate
psbJ gene − 64856 64978 123 Locate
psbL gene − 65112 65333 222 Locate
psbF gene − 65252 65371 120 Locate
psbE gene − 65386 65637 252 Locate
petL gene + 66546 66641 96 Locate
petG gene + 66817 66930 114 Locate
trnW-CCA gene − 67049 67122 74 Locate
trnP-UGG gene − 67292 67365 74 Locate
psaJ gene + 67638 67772 135 Locate
rpl33 gene + 68249 68449 201 Locate
rps18 gene + 68624 68929 306 Locate
rpl20 gene − 69166 69552 387 Locate
rps12 gene − 70349 70474 126 Locate
clpP gene − 70617 72549 1933 Locate
psbB gene + 73023 74549 1527 Locate
psbT gene + 74742 74843 102 Locate
psbN gene − 74917 75048 132 Locate
psbH gene + 75152 75373 222 Locate
petB gene + 75498 76864 1367 Locate
petD gene + 77053 78255 1203 Locate
rpoA gene − 78418 79431 1014 Locate
rps11 gene − 79503 79919 417 Locate
rpl36 gene − 80021 80134 114 Locate
infA gene − 80230 80463 234 Locate
rps8 gene − 80583 80993 411 Locate
rpl14 gene − 81161 81529 369 Locate
rpl16 gene − 81656 82899 1244 Locate
rps3 gene − 83054 83716 663 Locate
rpl22 gene − 83718 84173 456 Locate
rps19 gene − 84233 84511 279 Locate
rpl2 gene − 84567 86049 1483 Locate
rpl23 gene − 86068 86349 282 Locate
trnI-CAU gene − 86498 86571 74 Locate
ycf2 gene + 86660 93469 6810 Locate
ycf15 gene + 93560 93808 249 Locate
trnL-CAA gene − 94057 94137 81 Locate
ndhB gene − 94680 96837 2158 Locate
rps7 gene − 97166 97633 468 Locate
rps12 gene − 97687 98477 791 Locate
trnV-GAC gene + 100055 100126 72 Locate
rrn16 gene + 100354 101844 1491 Locate
trnI-GAU gene + 102143 103163 1021 Locate
trnA-UGC gene + 103228 104108 881 Locate
rrn23 gene + 104278 107090 2813 Locate
rrn4.5 gene + 107189 107291 103 Locate
rrn5 gene + 107539 107659 121 Locate
trnR-ACG gene + 107894 107967 74 Locate
trnN-GUU gene − 108514 108585 72 Locate
ndhF gene − 109662 111902 2241 Locate
rpl32 gene + 112424 112600 177 Locate
trnL-UAG gene + 113041 113120 80 Locate
ccsA gene + 113218 114192 975 Locate
ndhD gene − 114425 115927 1503 Locate
psaC gene − 116047 116292 246 Locate
ndhE gene − 116549 116854 306 Locate
ndhG gene − 117085 117615 531 Locate
ndhI gene − 117981 118481 501 Locate
ndhA gene − 118562 120661 2100 Locate
ndhH gene − 120663 121844 1182 Locate
rps15 gene − 121948 122220 273 Locate
ycf1 gene − 122487 128132 5646 Locate
trnN-GUU gene + 128351 128422 72 Locate
trnR-ACG gene − 128969 129042 74 Locate
rrn5 gene − 129277 129397 121 Locate
rrn4.5 gene − 129645 129747 103 Locate
rrn23 gene − 129846 132658 2813 Locate
trnA-UGC gene − 132828 133708 881 Locate
trnI-GAU gene − 133773 134793 1021 Locate
ycf68 gene − 134399 134638 240 Locate
rrn16 gene − 135092 136582 1491 Locate
trnV-GAC gene − 136810 136881 72 Locate
rps12 gene + 138459 139249 791 Locate
rps7 gene + 139303 139770 468 Locate
ndhB gene + 140099 142256 2158 Locate
trnL-CAA gene + 142799 142879 81 Locate
ycf15 gene − 143128 143376 249 Locate
ycf2 gene − 143467 150276 6810 Locate
trnI-CAU gene + 150365 150438 74 Locate
rpl23 gene + 150587 150868 282 Locate
rpl2 gene + 150887 152369 1483 Locate
Status Available
Accession PQ059299.1
Length 152,465 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources