Scutellaria pekinensis var. ussuriensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059194.1 · 3–76 bp · −
psbA · PQ059194.1 · 369–1,427 bp · −
trnK-UUU · PQ059194.1 · 1,661–4,248 bp · −
matK · PQ059194.1 · 1,956–3,491 bp · −
rps16 · PQ059194.1 · 5,147–6,307 bp · −
trnQ-UUG · PQ059194.1 · 7,427–7,498 bp · −
trnS-GCU · PQ059194.1 · 8,628–8,715 bp · −
atpA · PQ059194.1 · 10,498–12,021 bp · −
atpF · PQ059194.1 · 12,095–13,322 bp · −
atpH · PQ059194.1 · 13,678–13,923 bp · −
atpI · PQ059194.1 · 14,931–15,674 bp · −
rps2 · PQ059194.1 · 16,022–16,732 bp · −
rpoC2 · PQ059194.1 · 16,944–21,149 bp · −
rpoC1 · PQ059194.1 · 21,300–24,141 bp · −
rpoB · PQ059194.1 · 24,168–27,380 bp · −
psbM · PQ059194.1 · 30,425–30,529 bp · −
trnD-GUC · PQ059194.1 · 31,063–31,136 bp · −
trnY-GUA · PQ059194.1 · 31,250–31,333 bp · −
trnE-UUC · PQ059194.1 · 31,393–31,465 bp · −
trnS-UGA · PQ059194.1 · 36,102–36,193 bp · −
trnfM-CAU · PQ059194.1 · 37,196–37,269 bp · −
rps14 · PQ059194.1 · 37,419–37,721 bp · −
psaB · PQ059194.1 · 37,849–40,053 bp · −
psaA · PQ059194.1 · 40,079–42,331 bp · −
ycf3 · PQ059194.1 · 42,999–44,922 bp · −
rps4 · PQ059194.1 · 46,181–46,786 bp · −
trnT-UGU · PQ059194.1 · 47,131–47,203 bp · −
ndhJ · PQ059194.1 · 49,477–49,953 bp · −
ndhK · PQ059194.1 · 50,061–50,738 bp · −
ndhC · PQ059194.1 · 50,791–51,153 bp · −
trnV-UAC · PQ059194.1 · 52,122–52,774 bp · −
atpE · PQ059194.1 · 53,238–53,639 bp · −
atpB · PQ059194.1 · 53,636–55,123 bp · −
psbJ · PQ059194.1 · 64,891–65,013 bp · −
psbL · PQ059194.1 · 65,147–65,263 bp · −
psbF · PQ059194.1 · 65,287–65,406 bp · −
psbE · PQ059194.1 · 65,421–65,672 bp · −
trnW-CCA · PQ059194.1 · 67,084–67,157 bp · −
trnP-UGG · PQ059194.1 · 67,327–67,400 bp · −
rpl20 · PQ059194.1 · 69,202–69,588 bp · −
rps12 · PQ059194.1 · 70,385–70,510 bp · −
rps12 · PQ059194.1 · 97,734–98,524 bp · −
clpP · PQ059194.1 · 70,653–72,585 bp · −
psbN · PQ059194.1 · 74,953–75,084 bp · −
rpoA · PQ059194.1 · 78,454–79,467 bp · −
rps11 · PQ059194.1 · 79,539–79,955 bp · −
rpl36 · PQ059194.1 · 80,057–80,170 bp · −
infA · PQ059194.1 · 80,266–80,499 bp · −
rps8 · PQ059194.1 · 80,619–81,029 bp · −
rpl14 · PQ059194.1 · 81,201–81,569 bp · −
rpl16 · PQ059194.1 · 81,696–82,939 bp · −
rps3 · PQ059194.1 · 83,094–83,756 bp · −
rpl22 · PQ059194.1 · 83,758–84,213 bp · −
rps19 · PQ059194.1 · 84,273–84,551 bp · −
rpl2 · PQ059194.1 · 84,607–86,089 bp · −
rpl23 · PQ059194.1 · 86,108–86,389 bp · −
trnI-CAU · PQ059194.1 · 86,538–86,611 bp · −
trnL-CAA · PQ059194.1 · 94,104–94,184 bp · −
ndhB · PQ059194.1 · 94,727–96,938 bp · −
rps7 · PQ059194.1 · 97,213–97,680 bp · −
trnN-GUU · PQ059194.1 · 108,560–108,631 bp · −
ndhF · PQ059194.1 · 109,708–111,948 bp · −
ndhD · PQ059194.1 · 114,472–115,974 bp · −
psaC · PQ059194.1 · 116,094–116,339 bp · −
ndhE · PQ059194.1 · 116,596–116,901 bp · −
ndhG · PQ059194.1 · 117,132–117,662 bp · −
ndhI · PQ059194.1 · 118,028–118,528 bp · −
ndhA · PQ059194.1 · 118,609–120,708 bp · −
ndhH · PQ059194.1 · 120,710–121,891 bp · −
rps15 · PQ059194.1 · 121,995–122,327 bp · −
ycf1 · PQ059194.1 · 122,534–128,185 bp · −
trnR-ACG · PQ059194.1 · 129,022–129,095 bp · −
rrn5 · PQ059194.1 · 129,330–129,450 bp · −
rrn4.5 · PQ059194.1 · 129,698–129,800 bp · −
rrn23 · PQ059194.1 · 129,899–132,711 bp · −
trnI-GAU · PQ059194.1 · 133,826–134,846 bp · −
ycf68 · PQ059194.1 · 134,452–134,691 bp · −
rrn16 · PQ059194.1 · 135,145–136,635 bp · −
trnV-GAC · PQ059194.1 · 136,863–136,934 bp · −
ycf15 · PQ059194.1 · 143,188–143,436 bp · −
ycf2 · PQ059194.1 · 143,527–150,336 bp · −
psbK · PQ059194.1 · 7,823–8,008 bp · +
psbI · PQ059194.1 · 8,400–8,510 bp · +
trnG-UCC · PQ059194.1 · 9,394–10,155 bp · +
trnR-UCU · PQ059194.1 · 10,330–10,401 bp · +
trnC-GCA · PQ059194.1 · 28,546–28,616 bp · +
petN · PQ059194.1 · 29,319–29,408 bp · +
trnT-GGU · PQ059194.1 · 32,048–32,119 bp · +
psbD · PQ059194.1 · 33,429–34,490 bp · +
psbC · PQ059194.1 · 34,438–35,859 bp · +
psbZ · PQ059194.1 · 36,513–36,701 bp · +
trnG-GCC · PQ059194.1 · 36,973–37,043 bp · +
trnS-GGA · PQ059194.1 · 45,809–45,895 bp · +
trnL-UAA · PQ059194.1 · 47,881–48,451 bp · +
trnF-GAA · PQ059194.1 · 48,756–48,828 bp · +
trnM-CAU · PQ059194.1 · 52,956–53,028 bp · +
rbcL · PQ059194.1 · 55,884–57,347 bp · +
accD · PQ059194.1 · 58,069–59,535 bp · +
psaI · PQ059194.1 · 60,252–60,362 bp · +
ycf4 · PQ059194.1 · 60,796–61,350 bp · +
cemA · PQ059194.1 · 62,092–62,691 bp · +
petA · PQ059194.1 · 62,898–63,860 bp · +
petL · PQ059194.1 · 66,581–66,676 bp · +
petG · PQ059194.1 · 66,852–66,965 bp · +
psaJ · PQ059194.1 · 67,673–67,807 bp · +
rpl33 · PQ059194.1 · 68,284–68,484 bp · +
rps18 · PQ059194.1 · 68,659–68,964 bp · +
rps12 · PQ059194.1 · 138,512–139,302 bp · +
psbB · PQ059194.1 · 73,059–74,585 bp · +
psbT · PQ059194.1 · 74,778–74,879 bp · +
psbH · PQ059194.1 · 75,188–75,409 bp · +
petB · PQ059194.1 · 75,534–76,900 bp · +
petD · PQ059194.1 · 77,089–78,291 bp · +
ycf2 · PQ059194.1 · 86,700–93,509 bp · +
ycf15 · PQ059194.1 · 93,600–93,848 bp · +
trnV-GAC · PQ059194.1 · 100,102–100,173 bp · +
rrn16 · PQ059194.1 · 100,401–101,891 bp · +
trnI-GAU · PQ059194.1 · 102,190–103,210 bp · +
trnA-UGC · PQ059194.1 · 103,275–104,154 bp · +
rrn23 · PQ059194.1 · 104,324–107,136 bp · +
rrn4.5 · PQ059194.1 · 107,235–107,337 bp · +
rrn5 · PQ059194.1 · 107,585–107,705 bp · +
trnR-ACG · PQ059194.1 · 107,940–108,013 bp · +
rpl32 · PQ059194.1 · 112,470–112,646 bp · +
trnL-UAG · PQ059194.1 · 113,088–113,167 bp · +
ccsA · PQ059194.1 · 113,265–114,239 bp · +
trnN-GUU · PQ059194.1 · 128,404–128,475 bp · +
rps7 · PQ059194.1 · 139,356–139,823 bp · +
ndhB · PQ059194.1 · 140,098–142,309 bp · +
trnL-CAA · PQ059194.1 · 142,852–142,932 bp · +
trnI-CAU · PQ059194.1 · 150,425–150,498 bp · +
rpl23 · PQ059194.1 · 150,647–150,928 bp · +
rpl2 · PQ059194.1 · 150,947–152,429 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pekinensis var. ussuriensis
ANNOTATED PLASTOME
PQ059194.1
152,525 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38131 76262 114394 152525 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 369 1427 1059 Locate
trnK-UUU gene − 1661 4248 2588 Locate
matK gene − 1956 3491 1536 Locate
rps16 gene − 5147 6307 1161 Locate
trnQ-UUG gene − 7427 7498 72 Locate
psbK gene + 7823 8008 186 Locate
psbI gene + 8400 8510 111 Locate
trnS-GCU gene − 8628 8715 88 Locate
trnG-UCC gene + 9394 10155 762 Locate
trnR-UCU gene + 10330 10401 72 Locate
atpA gene − 10498 12021 1524 Locate
atpF gene − 12095 13322 1228 Locate
atpH gene − 13678 13923 246 Locate
atpI gene − 14931 15674 744 Locate
rps2 gene − 16022 16732 711 Locate
rpoC2 gene − 16944 21149 4206 Locate
rpoC1 gene − 21300 24141 2842 Locate
rpoB gene − 24168 27380 3213 Locate
trnC-GCA gene + 28546 28616 71 Locate
petN gene + 29319 29408 90 Locate
psbM gene − 30425 30529 105 Locate
trnD-GUC gene − 31063 31136 74 Locate
trnY-GUA gene − 31250 31333 84 Locate
trnE-UUC gene − 31393 31465 73 Locate
trnT-GGU gene + 32048 32119 72 Locate
psbD gene + 33429 34490 1062 Locate
psbC gene + 34438 35859 1422 Locate
trnS-UGA gene − 36102 36193 92 Locate
psbZ gene + 36513 36701 189 Locate
trnG-GCC gene + 36973 37043 71 Locate
trnfM-CAU gene − 37196 37269 74 Locate
rps14 gene − 37419 37721 303 Locate
psaB gene − 37849 40053 2205 Locate
psaA gene − 40079 42331 2253 Locate
ycf3 gene − 42999 44922 1924 Locate
trnS-GGA gene + 45809 45895 87 Locate
rps4 gene − 46181 46786 606 Locate
trnT-UGU gene − 47131 47203 73 Locate
trnL-UAA gene + 47881 48451 571 Locate
trnF-GAA gene + 48756 48828 73 Locate
ndhJ gene − 49477 49953 477 Locate
ndhK gene − 50061 50738 678 Locate
ndhC gene − 50791 51153 363 Locate
trnV-UAC gene − 52122 52774 653 Locate
trnM-CAU gene + 52956 53028 73 Locate
atpE gene − 53238 53639 402 Locate
atpB gene − 53636 55123 1488 Locate
rbcL gene + 55884 57347 1464 Locate
accD gene + 58069 59535 1467 Locate
psaI gene + 60252 60362 111 Locate
ycf4 gene + 60796 61350 555 Locate
cemA gene + 62092 62691 600 Locate
petA gene + 62898 63860 963 Locate
psbJ gene − 64891 65013 123 Locate
psbL gene − 65147 65263 117 Locate
psbF gene − 65287 65406 120 Locate
psbE gene − 65421 65672 252 Locate
petL gene + 66581 66676 96 Locate
petG gene + 66852 66965 114 Locate
trnW-CCA gene − 67084 67157 74 Locate
trnP-UGG gene − 67327 67400 74 Locate
psaJ gene + 67673 67807 135 Locate
rpl33 gene + 68284 68484 201 Locate
rps18 gene + 68659 68964 306 Locate
rpl20 gene − 69202 69588 387 Locate
rps12 gene − 70385 70510 126 Locate
clpP gene − 70653 72585 1933 Locate
psbB gene + 73059 74585 1527 Locate
psbT gene + 74778 74879 102 Locate
psbN gene − 74953 75084 132 Locate
psbH gene + 75188 75409 222 Locate
petB gene + 75534 76900 1367 Locate
petD gene + 77089 78291 1203 Locate
rpoA gene − 78454 79467 1014 Locate
rps11 gene − 79539 79955 417 Locate
rpl36 gene − 80057 80170 114 Locate
infA gene − 80266 80499 234 Locate
rps8 gene − 80619 81029 411 Locate
rpl14 gene − 81201 81569 369 Locate
rpl16 gene − 81696 82939 1244 Locate
rps3 gene − 83094 83756 663 Locate
rpl22 gene − 83758 84213 456 Locate
rps19 gene − 84273 84551 279 Locate
rpl2 gene − 84607 86089 1483 Locate
rpl23 gene − 86108 86389 282 Locate
trnI-CAU gene − 86538 86611 74 Locate
ycf2 gene + 86700 93509 6810 Locate
ycf15 gene + 93600 93848 249 Locate
trnL-CAA gene − 94104 94184 81 Locate
ndhB gene − 94727 96938 2212 Locate
rps7 gene − 97213 97680 468 Locate
rps12 gene − 97734 98524 791 Locate
trnV-GAC gene + 100102 100173 72 Locate
rrn16 gene + 100401 101891 1491 Locate
trnI-GAU gene + 102190 103210 1021 Locate
trnA-UGC gene + 103275 104154 880 Locate
rrn23 gene + 104324 107136 2813 Locate
rrn4.5 gene + 107235 107337 103 Locate
rrn5 gene + 107585 107705 121 Locate
trnR-ACG gene + 107940 108013 74 Locate
trnN-GUU gene − 108560 108631 72 Locate
ndhF gene − 109708 111948 2241 Locate
rpl32 gene + 112470 112646 177 Locate
trnL-UAG gene + 113088 113167 80 Locate
ccsA gene + 113265 114239 975 Locate
ndhD gene − 114472 115974 1503 Locate
psaC gene − 116094 116339 246 Locate
ndhE gene − 116596 116901 306 Locate
ndhG gene − 117132 117662 531 Locate
ndhI gene − 118028 118528 501 Locate
ndhA gene − 118609 120708 2100 Locate
ndhH gene − 120710 121891 1182 Locate
rps15 gene − 121995 122327 333 Locate
ycf1 gene − 122534 128185 5652 Locate
trnN-GUU gene + 128404 128475 72 Locate
trnR-ACG gene − 129022 129095 74 Locate
rrn5 gene − 129330 129450 121 Locate
rrn4.5 gene − 129698 129800 103 Locate
rrn23 gene − 129899 132711 2813 Locate
trnI-GAU gene − 133826 134846 1021 Locate
ycf68 gene − 134452 134691 240 Locate
rrn16 gene − 135145 136635 1491 Locate
trnV-GAC gene − 136863 136934 72 Locate
rps12 gene + 138512 139302 791 Locate
rps7 gene + 139356 139823 468 Locate
ndhB gene + 140098 142309 2212 Locate
trnL-CAA gene + 142852 142932 81 Locate
ycf15 gene − 143188 143436 249 Locate
ycf2 gene − 143527 150336 6810 Locate
trnI-CAU gene + 150425 150498 74 Locate
rpl23 gene + 150647 150928 282 Locate
rpl2 gene + 150947 152429 1483 Locate
Status Available
Accession PQ059194.1
Length 152,525 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources