Scutellaria peregrina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059200.1 · 4–77 bp · −
psbA · PQ059200.1 · 395–1,453 bp · −
trnK-UUU · PQ059200.1 · 1,695–4,288 bp · −
matK · PQ059200.1 · 1,984–3,528 bp · −
rps16 · PQ059200.1 · 5,196–6,368 bp · −
trnQ-UUG · PQ059200.1 · 7,480–7,551 bp · −
trnS-GCU · PQ059200.1 · 8,668–8,755 bp · −
atpA · PQ059200.1 · 10,540–12,063 bp · −
atpF · PQ059200.1 · 12,147–13,375 bp · −
atpH · PQ059200.1 · 13,746–13,991 bp · −
atpI · PQ059200.1 · 14,985–15,728 bp · −
rps2 · PQ059200.1 · 16,076–16,786 bp · −
rpoC2 · PQ059200.1 · 17,004–21,203 bp · −
rpoC1 · PQ059200.1 · 21,358–24,176 bp · −
rpoB · PQ059200.1 · 24,203–27,415 bp · −
psbM · PQ059200.1 · 30,517–30,621 bp · −
trnD-GUC · PQ059200.1 · 31,153–31,226 bp · −
trnY-GUA · PQ059200.1 · 31,340–31,423 bp · −
trnE-UUC · PQ059200.1 · 31,483–31,555 bp · −
trnS-UGA · PQ059200.1 · 36,170–36,261 bp · −
trnfM-CAU · PQ059200.1 · 37,257–37,330 bp · −
rps14 · PQ059200.1 · 37,480–37,782 bp · −
psaB · PQ059200.1 · 37,913–40,117 bp · −
psaA · PQ059200.1 · 40,143–42,395 bp · −
ycf3 · PQ059200.1 · 43,099–45,024 bp · −
rps4 · PQ059200.1 · 46,266–46,871 bp · −
trnT-UGU · PQ059200.1 · 47,213–47,285 bp · −
ndhJ · PQ059200.1 · 49,547–50,023 bp · −
ndhK · PQ059200.1 · 50,128–50,805 bp · −
ndhC · PQ059200.1 · 50,858–51,220 bp · −
trnV-UAC · PQ059200.1 · 52,209–52,867 bp · −
atpE · PQ059200.1 · 53,329–53,730 bp · −
atpB · PQ059200.1 · 53,727–55,223 bp · −
psbJ · PQ059200.1 · 64,403–64,525 bp · −
psbL · PQ059200.1 · 64,659–64,775 bp · −
psbF · PQ059200.1 · 64,799–64,918 bp · −
psbE · PQ059200.1 · 64,933–65,184 bp · −
trnW-CCA · PQ059200.1 · 66,600–66,673 bp · −
trnP-UGG · PQ059200.1 · 66,843–66,916 bp · −
rpl20 · PQ059200.1 · 68,718–69,104 bp · −
rps12 · PQ059200.1 · 69,901–70,014 bp · −
rps12 · PQ059200.1 · 97,216–98,006 bp · −
clpP · PQ059200.1 · 70,156–72,095 bp · −
psbN · PQ059200.1 · 74,423–74,554 bp · −
rpoA · PQ059200.1 · 77,935–78,948 bp · −
rps11 · PQ059200.1 · 79,020–79,436 bp · −
rpl36 · PQ059200.1 · 79,538–79,651 bp · −
infA · PQ059200.1 · 79,747–79,980 bp · −
rps8 · PQ059200.1 · 80,103–80,513 bp · −
rpl14 · PQ059200.1 · 80,679–81,047 bp · −
rpl16 · PQ059200.1 · 81,174–82,405 bp · −
rps3 · PQ059200.1 · 82,560–83,222 bp · −
rpl22 · PQ059200.1 · 83,224–83,679 bp · −
rps19 · PQ059200.1 · 83,739–84,017 bp · −
rpl2 · PQ059200.1 · 84,073–85,555 bp · −
rpl23 · PQ059200.1 · 85,574–85,855 bp · −
trnI-CAU · PQ059200.1 · 86,015–86,088 bp · −
trnL-CAA · PQ059200.1 · 93,586–93,666 bp · −
ndhB · PQ059200.1 · 94,209–96,420 bp · −
rps7 · PQ059200.1 · 96,695–97,162 bp · −
trnN-GUU · PQ059200.1 · 108,047–108,118 bp · −
ndhF · PQ059200.1 · 109,195–111,435 bp · −
ndhD · PQ059200.1 · 113,943–115,445 bp · −
psaC · PQ059200.1 · 115,579–115,824 bp · −
ndhE · PQ059200.1 · 116,080–116,385 bp · −
ndhG · PQ059200.1 · 116,609–117,139 bp · −
ndhI · PQ059200.1 · 117,488–117,988 bp · −
ndhA · PQ059200.1 · 118,069–120,178 bp · −
ndhH · PQ059200.1 · 120,180–121,361 bp · −
rps15 · PQ059200.1 · 121,458–121,730 bp · −
ycf1 · PQ059200.1 · 121,998–127,664 bp · −
trnR-ACG · PQ059200.1 · 128,510–128,583 bp · −
rrn5 · PQ059200.1 · 128,818–128,938 bp · −
rrn4.5 · PQ059200.1 · 129,186–129,288 bp · −
rrn23 · PQ059200.1 · 129,387–132,198 bp · −
trnA-UGC · PQ059200.1 · 132,368–133,256 bp · −
trnI-GAU · PQ059200.1 · 133,321–134,339 bp · −
ycf68 · PQ059200.1 · 133,891–134,184 bp · −
rrn16 · PQ059200.1 · 134,638–136,128 bp · −
trnV-GAC · PQ059200.1 · 136,351–136,422 bp · −
ycf15 · PQ059200.1 · 142,676–142,873 bp · −
ycf2 · PQ059200.1 · 143,015–149,824 bp · −
psbK · PQ059200.1 · 7,876–8,061 bp · +
psbI · PQ059200.1 · 8,459–8,569 bp · +
trnG-UCC · PQ059200.1 · 9,452–10,206 bp · +
trnR-UCU · PQ059200.1 · 10,372–10,443 bp · +
trnC-GCA · PQ059200.1 · 28,585–28,655 bp · +
petN · PQ059200.1 · 29,391–29,480 bp · +
trnT-GGU · PQ059200.1 · 32,127–32,198 bp · +
psbD · PQ059200.1 · 33,505–34,566 bp · +
psbC · PQ059200.1 · 34,514–35,935 bp · +
psbZ · PQ059200.1 · 36,581–36,769 bp · +
trnG-GCC · PQ059200.1 · 37,042–37,112 bp · +
trnS-GGA · PQ059200.1 · 45,900–45,986 bp · +
trnL-UAA · PQ059200.1 · 47,953–48,519 bp · +
trnF-GAA · PQ059200.1 · 48,825–48,897 bp · +
trnM-CAU · PQ059200.1 · 53,048–53,120 bp · +
rbcL · PQ059200.1 · 55,971–57,434 bp · +
accD · PQ059200.1 · 58,168–59,658 bp · +
psaI · PQ059200.1 · 59,896–60,006 bp · +
ycf4 · PQ059200.1 · 60,440–60,994 bp · +
cemA · PQ059200.1 · 61,608–62,207 bp · +
petA · PQ059200.1 · 62,414–63,382 bp · +
petL · PQ059200.1 · 66,107–66,202 bp · +
petG · PQ059200.1 · 66,378–66,491 bp · +
psaJ · PQ059200.1 · 67,189–67,323 bp · +
rpl33 · PQ059200.1 · 67,797–67,997 bp · +
rps18 · PQ059200.1 · 68,172–68,477 bp · +
rps12 · PQ059200.1 · 137,995–138,785 bp · +
psbB · PQ059200.1 · 72,549–74,075 bp · +
psbT · PQ059200.1 · 74,255–74,362 bp · +
psbH · PQ059200.1 · 74,658–74,879 bp · +
petB · PQ059200.1 · 75,004–76,372 bp · +
petD · PQ059200.1 · 76,561–77,772 bp · +
ycf2 · PQ059200.1 · 86,177–92,986 bp · +
ycf15 · PQ059200.1 · 93,128–93,325 bp · +
trnV-GAC · PQ059200.1 · 99,579–99,650 bp · +
rrn16 · PQ059200.1 · 99,873–101,363 bp · +
trnI-GAU · PQ059200.1 · 101,662–102,680 bp · +
trnA-UGC · PQ059200.1 · 102,745–103,633 bp · +
rrn23 · PQ059200.1 · 103,803–106,614 bp · +
rrn4.5 · PQ059200.1 · 106,713–106,815 bp · +
rrn5 · PQ059200.1 · 107,063–107,183 bp · +
trnR-ACG · PQ059200.1 · 107,418–107,491 bp · +
rpl32 · PQ059200.1 · 111,924–112,127 bp · +
trnL-UAG · PQ059200.1 · 112,563–112,642 bp · +
ccsA · PQ059200.1 · 112,731–113,705 bp · +
trnN-GUU · PQ059200.1 · 127,883–127,954 bp · +
rps7 · PQ059200.1 · 138,839–139,306 bp · +
ndhB · PQ059200.1 · 139,581–141,792 bp · +
trnL-CAA · PQ059200.1 · 142,335–142,415 bp · +
trnI-CAU · PQ059200.1 · 149,913–149,986 bp · +
rpl23 · PQ059200.1 · 150,146–150,427 bp · +
rpl2 · PQ059200.1 · 150,446–151,928 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria peregrina
ANNOTATED PLASTOME
PQ059200.1
152,024 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38006 76012 114018 152024 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1695 4288 2594 Locate
matK gene − 1984 3528 1545 Locate
rps16 gene − 5196 6368 1173 Locate
trnQ-UUG gene − 7480 7551 72 Locate
psbK gene + 7876 8061 186 Locate
psbI gene + 8459 8569 111 Locate
trnS-GCU gene − 8668 8755 88 Locate
trnG-UCC gene + 9452 10206 755 Locate
trnR-UCU gene + 10372 10443 72 Locate
atpA gene − 10540 12063 1524 Locate
atpF gene − 12147 13375 1229 Locate
atpH gene − 13746 13991 246 Locate
atpI gene − 14985 15728 744 Locate
rps2 gene − 16076 16786 711 Locate
rpoC2 gene − 17004 21203 4200 Locate
rpoC1 gene − 21358 24176 2819 Locate
rpoB gene − 24203 27415 3213 Locate
trnC-GCA gene + 28585 28655 71 Locate
petN gene + 29391 29480 90 Locate
psbM gene − 30517 30621 105 Locate
trnD-GUC gene − 31153 31226 74 Locate
trnY-GUA gene − 31340 31423 84 Locate
trnE-UUC gene − 31483 31555 73 Locate
trnT-GGU gene + 32127 32198 72 Locate
psbD gene + 33505 34566 1062 Locate
psbC gene + 34514 35935 1422 Locate
trnS-UGA gene − 36170 36261 92 Locate
psbZ gene + 36581 36769 189 Locate
trnG-GCC gene + 37042 37112 71 Locate
trnfM-CAU gene − 37257 37330 74 Locate
rps14 gene − 37480 37782 303 Locate
psaB gene − 37913 40117 2205 Locate
psaA gene − 40143 42395 2253 Locate
ycf3 gene − 43099 45024 1926 Locate
trnS-GGA gene + 45900 45986 87 Locate
rps4 gene − 46266 46871 606 Locate
trnT-UGU gene − 47213 47285 73 Locate
trnL-UAA gene + 47953 48519 567 Locate
trnF-GAA gene + 48825 48897 73 Locate
ndhJ gene − 49547 50023 477 Locate
ndhK gene − 50128 50805 678 Locate
ndhC gene − 50858 51220 363 Locate
trnV-UAC gene − 52209 52867 659 Locate
trnM-CAU gene + 53048 53120 73 Locate
atpE gene − 53329 53730 402 Locate
atpB gene − 53727 55223 1497 Locate
rbcL gene + 55971 57434 1464 Locate
accD gene + 58168 59658 1491 Locate
psaI gene + 59896 60006 111 Locate
ycf4 gene + 60440 60994 555 Locate
cemA gene + 61608 62207 600 Locate
petA gene + 62414 63382 969 Locate
psbJ gene − 64403 64525 123 Locate
psbL gene − 64659 64775 117 Locate
psbF gene − 64799 64918 120 Locate
psbE gene − 64933 65184 252 Locate
petL gene + 66107 66202 96 Locate
petG gene + 66378 66491 114 Locate
trnW-CCA gene − 66600 66673 74 Locate
trnP-UGG gene − 66843 66916 74 Locate
psaJ gene + 67189 67323 135 Locate
rpl33 gene + 67797 67997 201 Locate
rps18 gene + 68172 68477 306 Locate
rpl20 gene − 68718 69104 387 Locate
rps12 gene − 69901 70014 114 Locate
clpP gene − 70156 72095 1940 Locate
psbB gene + 72549 74075 1527 Locate
psbT gene + 74255 74362 108 Locate
psbN gene − 74423 74554 132 Locate
psbH gene + 74658 74879 222 Locate
petB gene + 75004 76372 1369 Locate
petD gene + 76561 77772 1212 Locate
rpoA gene − 77935 78948 1014 Locate
rps11 gene − 79020 79436 417 Locate
rpl36 gene − 79538 79651 114 Locate
infA gene − 79747 79980 234 Locate
rps8 gene − 80103 80513 411 Locate
rpl14 gene − 80679 81047 369 Locate
rpl16 gene − 81174 82405 1232 Locate
rps3 gene − 82560 83222 663 Locate
rpl22 gene − 83224 83679 456 Locate
rps19 gene − 83739 84017 279 Locate
rpl2 gene − 84073 85555 1483 Locate
rpl23 gene − 85574 85855 282 Locate
trnI-CAU gene − 86015 86088 74 Locate
ycf2 gene + 86177 92986 6810 Locate
ycf15 gene + 93128 93325 198 Locate
trnL-CAA gene − 93586 93666 81 Locate
ndhB gene − 94209 96420 2212 Locate
rps7 gene − 96695 97162 468 Locate
rps12 gene − 97216 98006 791 Locate
trnV-GAC gene + 99579 99650 72 Locate
rrn16 gene + 99873 101363 1491 Locate
trnI-GAU gene + 101662 102680 1019 Locate
trnA-UGC gene + 102745 103633 889 Locate
rrn23 gene + 103803 106614 2812 Locate
rrn4.5 gene + 106713 106815 103 Locate
rrn5 gene + 107063 107183 121 Locate
trnR-ACG gene + 107418 107491 74 Locate
trnN-GUU gene − 108047 108118 72 Locate
ndhF gene − 109195 111435 2241 Locate
rpl32 gene + 111924 112127 204 Locate
trnL-UAG gene + 112563 112642 80 Locate
ccsA gene + 112731 113705 975 Locate
ndhD gene − 113943 115445 1503 Locate
psaC gene − 115579 115824 246 Locate
ndhE gene − 116080 116385 306 Locate
ndhG gene − 116609 117139 531 Locate
ndhI gene − 117488 117988 501 Locate
ndhA gene − 118069 120178 2110 Locate
ndhH gene − 120180 121361 1182 Locate
rps15 gene − 121458 121730 273 Locate
ycf1 gene − 121998 127664 5667 Locate
trnN-GUU gene + 127883 127954 72 Locate
trnR-ACG gene − 128510 128583 74 Locate
rrn5 gene − 128818 128938 121 Locate
rrn4.5 gene − 129186 129288 103 Locate
rrn23 gene − 129387 132198 2812 Locate
trnA-UGC gene − 132368 133256 889 Locate
trnI-GAU gene − 133321 134339 1019 Locate
ycf68 gene − 133891 134184 294 Locate
rrn16 gene − 134638 136128 1491 Locate
trnV-GAC gene − 136351 136422 72 Locate
rps12 gene + 137995 138785 791 Locate
rps7 gene + 138839 139306 468 Locate
ndhB gene + 139581 141792 2212 Locate
trnL-CAA gene + 142335 142415 81 Locate
ycf15 gene − 142676 142873 198 Locate
ycf2 gene − 143015 149824 6810 Locate
trnI-CAU gene + 149913 149986 74 Locate
rpl23 gene + 150146 150427 282 Locate
rpl2 gene + 150446 151928 1483 Locate
Status Available
Accession PQ059200.1
Length 152,024 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources