Scutellaria phyllostachya chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PZ130071.1 · 4–77 bp · −
psbA · PZ130071.1 · 374–1,432 bp · −
trnK-UUU · PZ130071.1 · 1,674–4,255 bp · −
matK · PZ130071.1 · 1,964–3,490 bp · −
rps16 · PZ130071.1 · 5,157–6,318 bp · −
trnQ-UUG · PZ130071.1 · 7,063–7,134 bp · −
trnS-GCU · PZ130071.1 · 8,263–8,350 bp · −
atpA · PZ130071.1 · 10,143–11,666 bp · −
atpF · PZ130071.1 · 11,748–12,976 bp · −
atpH · PZ130071.1 · 13,337–13,582 bp · −
atpI · PZ130071.1 · 14,570–15,313 bp · −
rps2 · PZ130071.1 · 15,659–16,369 bp · −
rpoC2 · PZ130071.1 · 16,584–20,789 bp · −
rpoC1 · PZ130071.1 · 20,944–23,780 bp · −
rpoB · PZ130071.1 · 23,807–27,019 bp · −
psbM · PZ130071.1 · 30,084–30,188 bp · −
trnD-GUC · PZ130071.1 · 30,714–30,787 bp · −
trnY-GUA · PZ130071.1 · 30,901–30,984 bp · −
trnE-UUC · PZ130071.1 · 31,044–31,116 bp · −
trnS-UGA · PZ130071.1 · 35,734–35,825 bp · −
trnfM-CAU · PZ130071.1 · 36,822–36,895 bp · −
rps14 · PZ130071.1 · 37,045–37,347 bp · −
psaB · PZ130071.1 · 37,476–39,680 bp · −
psaA · PZ130071.1 · 39,706–41,958 bp · −
ycf3 · PZ130071.1 · 42,649–44,572 bp · −
rps4 · PZ130071.1 · 45,817–46,422 bp · −
trnT-UGU · PZ130071.1 · 46,768–46,840 bp · −
ndhJ · PZ130071.1 · 49,105–49,581 bp · −
ndhK · PZ130071.1 · 49,690–50,367 bp · −
ndhC · PZ130071.1 · 50,421–50,783 bp · −
trnV-UAC · PZ130071.1 · 51,769–52,421 bp · −
atpE · PZ130071.1 · 52,876–53,277 bp · −
atpB · PZ130071.1 · 53,274–54,770 bp · −
psbJ · PZ130071.1 · 64,507–64,629 bp · −
psbL · PZ130071.1 · 64,763–64,984 bp · −
psbF · PZ130071.1 · 64,903–65,022 bp · −
psbE · PZ130071.1 · 65,037–65,288 bp · −
trnW-CCA · PZ130071.1 · 66,668–66,741 bp · −
trnP-UGG · PZ130071.1 · 66,911–66,984 bp · −
rpl20 · PZ130071.1 · 68,782–69,168 bp · −
rps12 · PZ130071.1 · 69,963–70,076 bp · −
rps12 · PZ130071.1 · 97,222–98,012 bp · −
clpP · PZ130071.1 · 70,218–72,146 bp · −
psbN · PZ130071.1 · 74,484–74,615 bp · −
rpoA · PZ130071.1 · 78,176–78,976 bp · −
rps11 · PZ130071.1 · 79,048–79,464 bp · −
rpl36 · PZ130071.1 · 79,566–79,679 bp · −
infA · PZ130071.1 · 79,774–80,007 bp · −
rps8 · PZ130071.1 · 80,131–80,541 bp · −
rpl14 · PZ130071.1 · 80,694–81,062 bp · −
rpl16 · PZ130071.1 · 81,189–82,422 bp · −
rps3 · PZ130071.1 · 82,578–83,240 bp · −
rpl22 · PZ130071.1 · 83,242–83,697 bp · −
rps19 · PZ130071.1 · 83,757–84,035 bp · −
rpl2 · PZ130071.1 · 84,090–85,571 bp · −
rpl23 · PZ130071.1 · 85,590–85,871 bp · −
trnI-CAU · PZ130071.1 · 86,031–86,104 bp · −
trnL-CAA · PZ130071.1 · 93,592–93,672 bp · −
ndhB · PZ130071.1 · 94,215–96,372 bp · −
rps7 · PZ130071.1 · 96,701–97,168 bp · −
trnN-GUU · PZ130071.1 · 108,052–108,123 bp · −
ndhF · PZ130071.1 · 109,180–111,441 bp · −
ndhD · PZ130071.1 · 113,821–115,350 bp · −
psaC · PZ130071.1 · 115,451–115,696 bp · −
ndhE · PZ130071.1 · 115,952–116,257 bp · −
ndhG · PZ130071.1 · 116,474–117,004 bp · −
ndhI · PZ130071.1 · 117,371–117,871 bp · −
ndhA · PZ130071.1 · 117,957–120,078 bp · −
ndhH · PZ130071.1 · 120,080–121,291 bp · −
rps15 · PZ130071.1 · 121,358–121,630 bp · −
ycf1 · PZ130071.1 · 121,826–127,462 bp · −
trnR-ACG · PZ130071.1 · 128,301–128,374 bp · −
rrn5 · PZ130071.1 · 128,609–128,729 bp · −
rrn4.5 · PZ130071.1 · 128,977–129,079 bp · −
rrn23 · PZ130071.1 · 129,178–131,989 bp · −
trnA-UGC · PZ130071.1 · 132,159–133,047 bp · −
trnI-GAU · PZ130071.1 · 133,112–134,133 bp · −
ycf68 · PZ130071.1 · 133,685–133,978 bp · −
rrn16 · PZ130071.1 · 134,432–135,922 bp · −
trnV-GAC · PZ130071.1 · 136,149–136,220 bp · −
ycf15 · PZ130071.1 · 142,472–142,720 bp · −
ycf2 · PZ130071.1 · 142,811–149,611 bp · −
psbK · PZ130071.1 · 7,459–7,644 bp · +
psbI · PZ130071.1 · 8,034–8,144 bp · +
trnG-UCC · PZ130071.1 · 9,053–9,809 bp · +
trnR-UCU · PZ130071.1 · 9,975–10,046 bp · +
trnC-GCA · PZ130071.1 · 28,180–28,250 bp · +
petN · PZ130071.1 · 28,966–29,055 bp · +
trnT-GGU · PZ130071.1 · 31,692–31,763 bp · +
psbD · PZ130071.1 · 33,068–34,129 bp · +
psbC · PZ130071.1 · 34,077–35,498 bp · +
psbZ · PZ130071.1 · 36,141–36,329 bp · +
trnG-GCC · PZ130071.1 · 36,606–36,676 bp · +
trnS-GGA · PZ130071.1 · 45,455–45,541 bp · +
trnL-UAA · PZ130071.1 · 47,522–48,082 bp · +
trnF-GAA · PZ130071.1 · 48,384–48,456 bp · +
trnM-CAU · PZ130071.1 · 52,610–52,682 bp · +
rbcL · PZ130071.1 · 55,521–56,984 bp · +
accD · PZ130071.1 · 57,698–59,176 bp · +
psaI · PZ130071.1 · 59,883–59,993 bp · +
ycf4 · PZ130071.1 · 60,427–60,981 bp · +
cemA · PZ130071.1 · 61,729–62,328 bp · +
petA · PZ130071.1 · 62,535–63,497 bp · +
petL · PZ130071.1 · 66,165–66,260 bp · +
petG · PZ130071.1 · 66,436–66,549 bp · +
psaJ · PZ130071.1 · 67,256–67,390 bp · +
rpl33 · PZ130071.1 · 67,867–68,067 bp · +
rps18 · PZ130071.1 · 68,242–68,547 bp · +
rps12 · PZ130071.1 · 137,792–138,582 bp · +
psbB · PZ130071.1 · 72,598–74,124 bp · +
psbT · PZ130071.1 · 74,316–74,423 bp · +
psbH · PZ130071.1 · 74,719–74,940 bp · +
petB · PZ130071.1 · 75,065–76,432 bp · +
petD · PZ130071.1 · 76,615–77,821 bp · +
ycf2 · PZ130071.1 · 86,193–92,993 bp · +
ycf15 · PZ130071.1 · 93,084–93,332 bp · +
trnV-GAC · PZ130071.1 · 99,584–99,655 bp · +
rrn16 · PZ130071.1 · 99,882–101,372 bp · +
trnI-GAU · PZ130071.1 · 101,671–102,692 bp · +
trnA-UGC · PZ130071.1 · 102,757–103,645 bp · +
rrn23 · PZ130071.1 · 103,815–106,626 bp · +
rrn4.5 · PZ130071.1 · 106,725–106,827 bp · +
rrn5 · PZ130071.1 · 107,075–107,195 bp · +
trnR-ACG · PZ130071.1 · 107,430–107,503 bp · +
rpl32 · PZ130071.1 · 111,769–111,945 bp · +
trnL-UAG · PZ130071.1 · 112,392–112,471 bp · +
ccsA · PZ130071.1 · 112,573–113,547 bp · +
trnN-GUU · PZ130071.1 · 127,681–127,752 bp · +
rps7 · PZ130071.1 · 138,636–139,103 bp · +
ndhB · PZ130071.1 · 139,432–141,589 bp · +
trnL-CAA · PZ130071.1 · 142,132–142,212 bp · +
trnI-CAU · PZ130071.1 · 149,700–149,773 bp · +
rpl23 · PZ130071.1 · 149,933–150,214 bp · +
rpl2 · PZ130071.1 · 150,233–151,714 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria phyllostachya
ANNOTATED PLASTOME
PZ130071.1
151,814 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37954 75907 113860 151814 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6318 1162 Locate
trnQ-UUG gene − 7063 7134 72 Locate
psbK gene + 7459 7644 186 Locate
psbI gene + 8034 8144 111 Locate
trnS-GCU gene − 8263 8350 88 Locate
trnG-UCC gene + 9053 9809 757 Locate
trnR-UCU gene + 9975 10046 72 Locate
atpA gene − 10143 11666 1524 Locate
atpF gene − 11748 12976 1229 Locate
atpH gene − 13337 13582 246 Locate
atpI gene − 14570 15313 744 Locate
rps2 gene − 15659 16369 711 Locate
rpoC2 gene − 16584 20789 4206 Locate
rpoC1 gene − 20944 23780 2837 Locate
rpoB gene − 23807 27019 3213 Locate
trnC-GCA gene + 28180 28250 71 Locate
petN gene + 28966 29055 90 Locate
psbM gene − 30084 30188 105 Locate
trnD-GUC gene − 30714 30787 74 Locate
trnY-GUA gene − 30901 30984 84 Locate
trnE-UUC gene − 31044 31116 73 Locate
trnT-GGU gene + 31692 31763 72 Locate
psbD gene + 33068 34129 1062 Locate
psbC gene + 34077 35498 1422 Locate
trnS-UGA gene − 35734 35825 92 Locate
psbZ gene + 36141 36329 189 Locate
trnG-GCC gene + 36606 36676 71 Locate
trnfM-CAU gene − 36822 36895 74 Locate
rps14 gene − 37045 37347 303 Locate
psaB gene − 37476 39680 2205 Locate
psaA gene − 39706 41958 2253 Locate
ycf3 gene − 42649 44572 1924 Locate
trnS-GGA gene + 45455 45541 87 Locate
rps4 gene − 45817 46422 606 Locate
trnT-UGU gene − 46768 46840 73 Locate
trnL-UAA gene + 47522 48082 561 Locate
trnF-GAA gene + 48384 48456 73 Locate
ndhJ gene − 49105 49581 477 Locate
ndhK gene − 49690 50367 678 Locate
ndhC gene − 50421 50783 363 Locate
trnV-UAC gene − 51769 52421 653 Locate
trnM-CAU gene + 52610 52682 73 Locate
atpE gene − 52876 53277 402 Locate
atpB gene − 53274 54770 1497 Locate
rbcL gene + 55521 56984 1464 Locate
accD gene + 57698 59176 1479 Locate
psaI gene + 59883 59993 111 Locate
ycf4 gene + 60427 60981 555 Locate
cemA gene + 61729 62328 600 Locate
petA gene + 62535 63497 963 Locate
psbJ gene − 64507 64629 123 Locate
psbL gene − 64763 64984 222 Locate
psbF gene − 64903 65022 120 Locate
psbE gene − 65037 65288 252 Locate
petL gene + 66165 66260 96 Locate
petG gene + 66436 66549 114 Locate
trnW-CCA gene − 66668 66741 74 Locate
trnP-UGG gene − 66911 66984 74 Locate
psaJ gene + 67256 67390 135 Locate
rpl33 gene + 67867 68067 201 Locate
rps18 gene + 68242 68547 306 Locate
rpl20 gene − 68782 69168 387 Locate
rps12 gene − 69963 70076 114 Locate
clpP gene − 70218 72146 1929 Locate
psbB gene + 72598 74124 1527 Locate
psbT gene + 74316 74423 108 Locate
psbN gene − 74484 74615 132 Locate
psbH gene + 74719 74940 222 Locate
petB gene + 75065 76432 1368 Locate
petD gene + 76615 77821 1207 Locate
rpoA gene − 78176 78976 801 Locate
rps11 gene − 79048 79464 417 Locate
rpl36 gene − 79566 79679 114 Locate
infA gene − 79774 80007 234 Locate
rps8 gene − 80131 80541 411 Locate
rpl14 gene − 80694 81062 369 Locate
rpl16 gene − 81189 82422 1234 Locate
rps3 gene − 82578 83240 663 Locate
rpl22 gene − 83242 83697 456 Locate
rps19 gene − 83757 84035 279 Locate
rpl2 gene − 84090 85571 1482 Locate
rpl23 gene − 85590 85871 282 Locate
trnI-CAU gene − 86031 86104 74 Locate
ycf2 gene + 86193 92993 6801 Locate
ycf15 gene + 93084 93332 249 Locate
trnL-CAA gene − 93592 93672 81 Locate
ndhB gene − 94215 96372 2158 Locate
rps7 gene − 96701 97168 468 Locate
rps12 gene − 97222 98012 791 Locate
trnV-GAC gene + 99584 99655 72 Locate
rrn16 gene + 99882 101372 1491 Locate
trnI-GAU gene + 101671 102692 1022 Locate
trnA-UGC gene + 102757 103645 889 Locate
rrn23 gene + 103815 106626 2812 Locate
rrn4.5 gene + 106725 106827 103 Locate
rrn5 gene + 107075 107195 121 Locate
trnR-ACG gene + 107430 107503 74 Locate
trnN-GUU gene − 108052 108123 72 Locate
ndhF gene − 109180 111441 2262 Locate
rpl32 gene + 111769 111945 177 Locate
trnL-UAG gene + 112392 112471 80 Locate
ccsA gene + 112573 113547 975 Locate
ndhD gene − 113821 115350 1530 Locate
psaC gene − 115451 115696 246 Locate
ndhE gene − 115952 116257 306 Locate
ndhG gene − 116474 117004 531 Locate
ndhI gene − 117371 117871 501 Locate
ndhA gene − 117957 120078 2122 Locate
ndhH gene − 120080 121291 1212 Locate
rps15 gene − 121358 121630 273 Locate
ycf1 gene − 121826 127462 5637 Locate
trnN-GUU gene + 127681 127752 72 Locate
trnR-ACG gene − 128301 128374 74 Locate
rrn5 gene − 128609 128729 121 Locate
rrn4.5 gene − 128977 129079 103 Locate
rrn23 gene − 129178 131989 2812 Locate
trnA-UGC gene − 132159 133047 889 Locate
trnI-GAU gene − 133112 134133 1022 Locate
ycf68 gene − 133685 133978 294 Locate
rrn16 gene − 134432 135922 1491 Locate
trnV-GAC gene − 136149 136220 72 Locate
rps12 gene + 137792 138582 791 Locate
rps7 gene + 138636 139103 468 Locate
ndhB gene + 139432 141589 2158 Locate
trnL-CAA gene + 142132 142212 81 Locate
ycf15 gene − 142472 142720 249 Locate
ycf2 gene − 142811 149611 6801 Locate
trnI-CAU gene + 149700 149773 74 Locate
rpl23 gene + 149933 150214 282 Locate
rpl2 gene + 150233 151714 1482 Locate
Status Available
Accession PZ130071.1
Length 151,814 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources