Scutellaria pinnatifida subsp. alpina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059206.1 · 4–77 bp · −
psbA · PQ059206.1 · 374–1,432 bp · −
trnK-UUU · PQ059206.1 · 1,674–4,255 bp · −
matK · PQ059206.1 · 1,964–3,490 bp · −
rps16 · PQ059206.1 · 5,157–6,316 bp · −
trnQ-UUG · PQ059206.1 · 7,050–7,121 bp · −
trnS-GCU · PQ059206.1 · 8,253–8,340 bp · −
atpA · PQ059206.1 · 10,142–11,665 bp · −
atpF · PQ059206.1 · 11,747–12,975 bp · −
atpH · PQ059206.1 · 13,331–13,576 bp · −
atpI · PQ059206.1 · 14,564–15,307 bp · −
rps2 · PQ059206.1 · 15,653–16,363 bp · −
rpoC2 · PQ059206.1 · 16,579–20,784 bp · −
rpoC1 · PQ059206.1 · 20,939–23,775 bp · −
rpoB · PQ059206.1 · 23,802–27,014 bp · −
psbM · PQ059206.1 · 30,147–30,251 bp · −
trnD-GUC · PQ059206.1 · 30,777–30,850 bp · −
trnY-GUA · PQ059206.1 · 30,964–31,047 bp · −
trnE-UUC · PQ059206.1 · 31,107–31,179 bp · −
trnS-UGA · PQ059206.1 · 35,797–35,888 bp · −
trnfM-CAU · PQ059206.1 · 36,883–36,956 bp · −
rps14 · PQ059206.1 · 37,106–37,408 bp · −
psaB · PQ059206.1 · 37,537–39,741 bp · −
psaA · PQ059206.1 · 39,767–42,019 bp · −
ycf3 · PQ059206.1 · 42,724–44,647 bp · −
rps4 · PQ059206.1 · 45,892–46,497 bp · −
trnT-UGU · PQ059206.1 · 46,839–46,911 bp · −
ndhJ · PQ059206.1 · 49,174–49,650 bp · −
ndhK · PQ059206.1 · 49,759–50,520 bp · −
ndhC · PQ059206.1 · 50,490–50,852 bp · −
trnV-UAC · PQ059206.1 · 51,838–52,490 bp · −
atpE · PQ059206.1 · 52,945–53,346 bp · −
atpB · PQ059206.1 · 53,343–54,839 bp · −
psbJ · PQ059206.1 · 64,578–64,700 bp · −
psbL · PQ059206.1 · 64,834–64,950 bp · −
psbF · PQ059206.1 · 64,974–65,093 bp · −
psbE · PQ059206.1 · 65,108–65,359 bp · −
trnW-CCA · PQ059206.1 · 66,740–66,813 bp · −
trnP-UGG · PQ059206.1 · 66,983–67,056 bp · −
rpl20 · PQ059206.1 · 68,860–69,246 bp · −
rps12 · PQ059206.1 · 70,041–70,154 bp · −
rps12 · PQ059206.1 · 97,306–98,096 bp · −
clpP · PQ059206.1 · 70,296–72,224 bp · −
psbN · PQ059206.1 · 74,562–74,693 bp · −
rpoA · PQ059206.1 · 78,261–79,061 bp · −
rps11 · PQ059206.1 · 79,133–79,549 bp · −
rpl36 · PQ059206.1 · 79,651–79,764 bp · −
infA · PQ059206.1 · 79,859–80,092 bp · −
rps8 · PQ059206.1 · 80,215–80,625 bp · −
rpl14 · PQ059206.1 · 80,778–81,146 bp · −
rpl16 · PQ059206.1 · 81,273–82,506 bp · −
rps3 · PQ059206.1 · 82,662–83,324 bp · −
rpl22 · PQ059206.1 · 83,326–83,781 bp · −
rps19 · PQ059206.1 · 83,841–84,119 bp · −
rpl2 · PQ059206.1 · 84,174–85,655 bp · −
rpl23 · PQ059206.1 · 85,674–85,955 bp · −
trnI-CAU · PQ059206.1 · 86,115–86,188 bp · −
trnL-CAA · PQ059206.1 · 93,676–93,756 bp · −
ndhB · PQ059206.1 · 94,299–96,456 bp · −
rps7 · PQ059206.1 · 96,785–97,252 bp · −
trnN-GUU · PQ059206.1 · 108,126–108,197 bp · −
ndhF · PQ059206.1 · 109,254–111,515 bp · −
ndhD · PQ059206.1 · 113,878–115,407 bp · −
psaC · PQ059206.1 · 115,508–115,753 bp · −
ndhE · PQ059206.1 · 116,009–116,314 bp · −
ndhG · PQ059206.1 · 116,531–117,061 bp · −
ndhI · PQ059206.1 · 117,428–117,928 bp · −
ndhA · PQ059206.1 · 118,014–120,135 bp · −
ndhH · PQ059206.1 · 120,137–121,318 bp · −
rps15 · PQ059206.1 · 121,415–121,687 bp · −
ycf1 · PQ059206.1 · 121,883–127,519 bp · −
trnR-ACG · PQ059206.1 · 128,358–128,431 bp · −
rrn5 · PQ059206.1 · 128,666–128,786 bp · −
rrn4.5 · PQ059206.1 · 129,034–129,136 bp · −
rrn23 · PQ059206.1 · 129,235–132,046 bp · −
trnA-UGC · PQ059206.1 · 132,209–133,095 bp · −
trnI-GAU · PQ059206.1 · 133,160–134,180 bp · −
ycf68 · PQ059206.1 · 133,732–134,025 bp · −
rrn16 · PQ059206.1 · 134,479–135,969 bp · −
trnV-GAC · PQ059206.1 · 136,196–136,267 bp · −
ycf15 · PQ059206.1 · 142,519–142,716 bp · −
ycf2 · PQ059206.1 · 142,858–149,658 bp · −
psbK · PQ059206.1 · 7,446–7,631 bp · +
psbI · PQ059206.1 · 8,021–8,131 bp · +
trnG-UCC · PQ059206.1 · 9,043–9,799 bp · +
trnR-UCU · PQ059206.1 · 9,974–10,045 bp · +
trnC-GCA · PQ059206.1 · 28,176–28,246 bp · +
petN · PQ059206.1 · 28,963–29,052 bp · +
trnT-GGU · PQ059206.1 · 31,755–31,826 bp · +
psbD · PQ059206.1 · 33,132–34,193 bp · +
psbC · PQ059206.1 · 34,141–35,562 bp · +
psbZ · PQ059206.1 · 36,204–36,392 bp · +
trnG-GCC · PQ059206.1 · 36,667–36,737 bp · +
trnS-GGA · PQ059206.1 · 45,530–45,616 bp · +
trnL-UAA · PQ059206.1 · 47,592–48,151 bp · +
trnF-GAA · PQ059206.1 · 48,453–48,525 bp · +
trnM-CAU · PQ059206.1 · 52,679–52,751 bp · +
rbcL · PQ059206.1 · 55,590–57,053 bp · +
accD · PQ059206.1 · 57,768–59,246 bp · +
psaI · PQ059206.1 · 59,953–60,063 bp · +
ycf4 · PQ059206.1 · 60,497–61,051 bp · +
cemA · PQ059206.1 · 61,800–62,399 bp · +
petA · PQ059206.1 · 62,606–63,568 bp · +
petL · PQ059206.1 · 66,237–66,332 bp · +
petG · PQ059206.1 · 66,508–66,621 bp · +
psaJ · PQ059206.1 · 67,328–67,462 bp · +
rpl33 · PQ059206.1 · 67,945–68,145 bp · +
rps18 · PQ059206.1 · 68,320–68,625 bp · +
rps12 · PQ059206.1 · 137,839–138,629 bp · +
psbB · PQ059206.1 · 72,676–74,202 bp · +
psbT · PQ059206.1 · 74,394–74,501 bp · +
psbH · PQ059206.1 · 74,797–75,018 bp · +
petB · PQ059206.1 · 75,143–76,517 bp · +
petD · PQ059206.1 · 76,700–77,906 bp · +
ycf2 · PQ059206.1 · 86,277–93,077 bp · +
ycf15 · PQ059206.1 · 93,219–93,416 bp · +
trnV-GAC · PQ059206.1 · 99,668–99,739 bp · +
rrn16 · PQ059206.1 · 99,966–101,456 bp · +
trnI-GAU · PQ059206.1 · 101,755–102,775 bp · +
trnA-UGC · PQ059206.1 · 102,840–103,726 bp · +
rrn23 · PQ059206.1 · 103,889–106,700 bp · +
rrn4.5 · PQ059206.1 · 106,799–106,901 bp · +
rrn5 · PQ059206.1 · 107,149–107,269 bp · +
trnR-ACG · PQ059206.1 · 107,504–107,577 bp · +
rpl32 · PQ059206.1 · 111,843–112,019 bp · +
trnL-UAG · PQ059206.1 · 112,466–112,545 bp · +
ccsA · PQ059206.1 · 112,647–113,621 bp · +
trnN-GUU · PQ059206.1 · 127,738–127,809 bp · +
rps7 · PQ059206.1 · 138,683–139,150 bp · +
ndhB · PQ059206.1 · 139,479–141,636 bp · +
trnL-CAA · PQ059206.1 · 142,179–142,259 bp · +
trnI-CAU · PQ059206.1 · 149,747–149,820 bp · +
rpl23 · PQ059206.1 · 149,980–150,261 bp · +
rpl2 · PQ059206.1 · 150,280–151,761 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pinnatifida subsp. alpina
ANNOTATED PLASTOME
PQ059206.1
151,861 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37965 75930 113896 151861 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6316 1160 Locate
trnQ-UUG gene − 7050 7121 72 Locate
psbK gene + 7446 7631 186 Locate
psbI gene + 8021 8131 111 Locate
trnS-GCU gene − 8253 8340 88 Locate
trnG-UCC gene + 9043 9799 757 Locate
trnR-UCU gene + 9974 10045 72 Locate
atpA gene − 10142 11665 1524 Locate
atpF gene − 11747 12975 1229 Locate
atpH gene − 13331 13576 246 Locate
atpI gene − 14564 15307 744 Locate
rps2 gene − 15653 16363 711 Locate
rpoC2 gene − 16579 20784 4206 Locate
rpoC1 gene − 20939 23775 2837 Locate
rpoB gene − 23802 27014 3213 Locate
trnC-GCA gene + 28176 28246 71 Locate
petN gene + 28963 29052 90 Locate
psbM gene − 30147 30251 105 Locate
trnD-GUC gene − 30777 30850 74 Locate
trnY-GUA gene − 30964 31047 84 Locate
trnE-UUC gene − 31107 31179 73 Locate
trnT-GGU gene + 31755 31826 72 Locate
psbD gene + 33132 34193 1062 Locate
psbC gene + 34141 35562 1422 Locate
trnS-UGA gene − 35797 35888 92 Locate
psbZ gene + 36204 36392 189 Locate
trnG-GCC gene + 36667 36737 71 Locate
trnfM-CAU gene − 36883 36956 74 Locate
rps14 gene − 37106 37408 303 Locate
psaB gene − 37537 39741 2205 Locate
psaA gene − 39767 42019 2253 Locate
ycf3 gene − 42724 44647 1924 Locate
trnS-GGA gene + 45530 45616 87 Locate
rps4 gene − 45892 46497 606 Locate
trnT-UGU gene − 46839 46911 73 Locate
trnL-UAA gene + 47592 48151 560 Locate
trnF-GAA gene + 48453 48525 73 Locate
ndhJ gene − 49174 49650 477 Locate
ndhK gene − 49759 50520 762 Locate
ndhC gene − 50490 50852 363 Locate
trnV-UAC gene − 51838 52490 653 Locate
trnM-CAU gene + 52679 52751 73 Locate
atpE gene − 52945 53346 402 Locate
atpB gene − 53343 54839 1497 Locate
rbcL gene + 55590 57053 1464 Locate
accD gene + 57768 59246 1479 Locate
psaI gene + 59953 60063 111 Locate
ycf4 gene + 60497 61051 555 Locate
cemA gene + 61800 62399 600 Locate
petA gene + 62606 63568 963 Locate
psbJ gene − 64578 64700 123 Locate
psbL gene − 64834 64950 117 Locate
psbF gene − 64974 65093 120 Locate
psbE gene − 65108 65359 252 Locate
petL gene + 66237 66332 96 Locate
petG gene + 66508 66621 114 Locate
trnW-CCA gene − 66740 66813 74 Locate
trnP-UGG gene − 66983 67056 74 Locate
psaJ gene + 67328 67462 135 Locate
rpl33 gene + 67945 68145 201 Locate
rps18 gene + 68320 68625 306 Locate
rpl20 gene − 68860 69246 387 Locate
rps12 gene − 70041 70154 114 Locate
clpP gene − 70296 72224 1929 Locate
psbB gene + 72676 74202 1527 Locate
psbT gene + 74394 74501 108 Locate
psbN gene − 74562 74693 132 Locate
psbH gene + 74797 75018 222 Locate
petB gene + 75143 76517 1375 Locate
petD gene + 76700 77906 1207 Locate
rpoA gene − 78261 79061 801 Locate
rps11 gene − 79133 79549 417 Locate
rpl36 gene − 79651 79764 114 Locate
infA gene − 79859 80092 234 Locate
rps8 gene − 80215 80625 411 Locate
rpl14 gene − 80778 81146 369 Locate
rpl16 gene − 81273 82506 1234 Locate
rps3 gene − 82662 83324 663 Locate
rpl22 gene − 83326 83781 456 Locate
rps19 gene − 83841 84119 279 Locate
rpl2 gene − 84174 85655 1482 Locate
rpl23 gene − 85674 85955 282 Locate
trnI-CAU gene − 86115 86188 74 Locate
ycf2 gene + 86277 93077 6801 Locate
ycf15 gene + 93219 93416 198 Locate
trnL-CAA gene − 93676 93756 81 Locate
ndhB gene − 94299 96456 2158 Locate
rps7 gene − 96785 97252 468 Locate
rps12 gene − 97306 98096 791 Locate
trnV-GAC gene + 99668 99739 72 Locate
rrn16 gene + 99966 101456 1491 Locate
trnI-GAU gene + 101755 102775 1021 Locate
trnA-UGC gene + 102840 103726 887 Locate
rrn23 gene + 103889 106700 2812 Locate
rrn4.5 gene + 106799 106901 103 Locate
rrn5 gene + 107149 107269 121 Locate
trnR-ACG gene + 107504 107577 74 Locate
trnN-GUU gene − 108126 108197 72 Locate
ndhF gene − 109254 111515 2262 Locate
rpl32 gene + 111843 112019 177 Locate
trnL-UAG gene + 112466 112545 80 Locate
ccsA gene + 112647 113621 975 Locate
ndhD gene − 113878 115407 1530 Locate
psaC gene − 115508 115753 246 Locate
ndhE gene − 116009 116314 306 Locate
ndhG gene − 116531 117061 531 Locate
ndhI gene − 117428 117928 501 Locate
ndhA gene − 118014 120135 2122 Locate
ndhH gene − 120137 121318 1182 Locate
rps15 gene − 121415 121687 273 Locate
ycf1 gene − 121883 127519 5637 Locate
trnN-GUU gene + 127738 127809 72 Locate
trnR-ACG gene − 128358 128431 74 Locate
rrn5 gene − 128666 128786 121 Locate
rrn4.5 gene − 129034 129136 103 Locate
rrn23 gene − 129235 132046 2812 Locate
trnA-UGC gene − 132209 133095 887 Locate
trnI-GAU gene − 133160 134180 1021 Locate
ycf68 gene − 133732 134025 294 Locate
rrn16 gene − 134479 135969 1491 Locate
trnV-GAC gene − 136196 136267 72 Locate
rps12 gene + 137839 138629 791 Locate
rps7 gene + 138683 139150 468 Locate
ndhB gene + 139479 141636 2158 Locate
trnL-CAA gene + 142179 142259 81 Locate
ycf15 gene − 142519 142716 198 Locate
ycf2 gene − 142858 149658 6801 Locate
trnI-CAU gene + 149747 149820 74 Locate
rpl23 gene + 149980 150261 282 Locate
rpl2 gene + 150280 151761 1482 Locate
Status Available
Accession PQ059206.1
Length 151,861 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources