Scutellaria pinnatifida subsp. mucida chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420948.1 · 4–77 bp · −
psbA · MW420948.1 · 373–1,431 bp · −
trnK-UUU · MW420948.1 · 1,669–4,242 bp · −
matK · MW420948.1 · 1,955–3,481 bp · −
rps16 · MW420948.1 · 5,149–6,309 bp · −
trnQ-UUC · MW420948.1 · 7,054–7,125 bp · −
trnS-GCU · MW420948.1 · 8,254–8,341 bp · −
atpA · MW420948.1 · 10,157–11,680 bp · −
atpF · MW420948.1 · 11,762–12,991 bp · −
atpH · MW420948.1 · 13,352–13,597 bp · −
atpI · MW420948.1 · 14,585–15,328 bp · −
rps2 · MW420948.1 · 15,674–16,384 bp · −
rpoC2 · MW420948.1 · 16,600–20,805 bp · −
rpoC1 · MW420948.1 · 20,960–23,796 bp · −
rpoB · MW420948.1 · 23,823–27,035 bp · −
psbM · MW420948.1 · 30,074–30,178 bp · −
trnD-GUC · MW420948.1 · 30,704–30,777 bp · −
trnY-GUA · MW420948.1 · 30,891–30,974 bp · −
trnE-UUC · MW420948.1 · 31,034–31,106 bp · −
trnS-UCA · MW420948.1 · 35,724–35,816 bp · −
trnfM-CAU · MW420948.1 · 36,820–36,893 bp · −
rps14 · MW420948.1 · 37,048–37,350 bp · −
psaB · MW420948.1 · 37,479–39,683 bp · −
psaA · MW420948.1 · 39,709–41,961 bp · −
ycf3 · MW420948.1 · 42,668–44,589 bp · −
rps4 · MW420948.1 · 45,834–46,439 bp · −
trnT-UGU · MW420948.1 · 46,781–46,853 bp · −
ndhJ · MW420948.1 · 49,116–49,592 bp · −
ndhK · MW420948.1 · 49,701–50,378 bp · −
ndhC · MW420948.1 · 50,432–50,794 bp · −
trnV-UAC · MW420948.1 · 51,780–52,432 bp · −
atpE · MW420948.1 · 52,887–53,288 bp · −
atpB · MW420948.1 · 53,285–54,781 bp · −
pabJ · MW420948.1 · 64,519–64,641 bp · −
psbL · MW420948.1 · 64,775–64,891 bp · −
psbF · MW420948.1 · 64,915–65,034 bp · −
psbE · MW420948.1 · 65,049–65,300 bp · −
trnW-CCA · MW420948.1 · 66,681–66,754 bp · −
trnP-UGG · MW420948.1 · 66,924–66,997 bp · −
rpl20 · MW420948.1 · 68,801–69,187 bp · −
rps12 · MW420948.1 · 69,970–70,095 bp · −
rps12 · MW420948.1 · 97,244–98,034 bp · −
clpP · MW420948.1 · 70,237–72,164 bp · −
psbN · MW420948.1 · 74,502–74,633 bp · −
rpoA · MW420948.1 · 78,198–78,998 bp · −
rps11 · MW420948.1 · 79,070–79,486 bp · −
rpl36 · MW420948.1 · 79,588–79,701 bp · −
infA · MW420948.1 · 79,796–80,029 bp · −
rps8 · MW420948.1 · 80,153–80,563 bp · −
rpl14 · MW420948.1 · 80,716–81,084 bp · −
rpl16 · MW420948.1 · 81,211–82,444 bp · −
rps3 · MW420948.1 · 82,600–83,262 bp · −
rpl22 · MW420948.1 · 83,264–83,719 bp · −
rps19 · MW420948.1 · 83,779–84,057 bp · −
rpl2 · MW420948.1 · 84,112–85,593 bp · −
rpl23 · MW420948.1 · 85,612–85,893 bp · −
trnI-CAU · MW420948.1 · 86,053–86,126 bp · −
trnL-CAA · MW420948.1 · 93,614–93,694 bp · −
ndhB · MW420948.1 · 94,237–96,448 bp · −
rps7 · MW420948.1 · 96,723–97,190 bp · −
ndhF · MW420948.1 · 109,198–111,459 bp · −
ndhD · MW420948.1 · 113,822–115,351 bp · −
psaC · MW420948.1 · 115,452–115,697 bp · −
ndhE · MW420948.1 · 115,953–116,258 bp · −
ndhG · MW420948.1 · 116,475–117,005 bp · −
ndhI · MW420948.1 · 117,372–117,872 bp · −
ndhA · MW420948.1 · 117,958–120,079 bp · −
ndhH · MW420948.1 · 120,081–121,262 bp · −
rps15 · MW420948.1 · 121,359–121,631 bp · −
ycf1 · MW420948.1 · 121,829–127,354 bp · −
trnR-ACG · MW420948.1 · 128,304–128,377 bp · −
rrn5 · MW420948.1 · 128,612–128,732 bp · −
rrn4.5 · MW420948.1 · 128,980–129,082 bp · −
rrn23 · MW420948.1 · 129,181–131,992 bp · −
trnA-UGC · MW420948.1 · 132,162–133,047 bp · −
trnI-GAU · MW420948.1 · 133,113–134,132 bp · −
rrn16 · MW420948.1 · 134,431–135,921 bp · −
trnV-GAC · MW420948.1 · 136,148–136,219 bp · −
ycf15 · MW420948.1 · 142,471–142,668 bp · −
ycf2 · MW420948.1 · 142,810–149,610 bp · −
psbK · MW420948.1 · 7,450–7,635 bp · +
psbI · MW420948.1 · 8,025–8,135 bp · +
trnG-CGA · MW420948.1 · 9,057–9,814 bp · +
trnR-UCU · MW420948.1 · 9,989–10,060 bp · +
trnC-GCA · MW420948.1 · 28,196–28,266 bp · +
petN · MW420948.1 · 28,981–29,070 bp · +
trnT-GGU · MW420948.1 · 31,682–31,753 bp · +
psbD · MW420948.1 · 33,059–34,120 bp · +
psbC · MW420948.1 · 34,068–35,489 bp · +
psbZ · MW420948.1 · 36,132–36,320 bp · +
trnG-GCC · MW420948.1 · 36,601–36,671 bp · +
trnS-GGA · MW420948.1 · 45,472–45,558 bp · +
trnL-UAA · MW420948.1 · 47,534–48,094 bp · +
trnF-GAA · MW420948.1 · 48,395–48,467 bp · +
trnM-CAU · MW420948.1 · 52,621–52,693 bp · +
rbcL · MW420948.1 · 55,553–56,995 bp · +
accD · MW420948.1 · 57,709–59,187 bp · +
psaI · MW420948.1 · 59,894–60,004 bp · +
ycf4 · MW420948.1 · 60,438–60,992 bp · +
cemA · MW420948.1 · 61,652–62,341 bp · +
petA · MW420948.1 · 62,548–63,510 bp · +
petL · MW420948.1 · 66,178–66,273 bp · +
petG · MW420948.1 · 66,449–66,562 bp · +
psbJ · MW420948.1 · 67,269–67,403 bp · +
rpl33 · MW420948.1 · 67,887–68,087 bp · +
rps18 · MW420948.1 · 68,262–68,567 bp · +
rps12 · MW420948.1 · 137,791–138,581 bp · +
psbB · MW420948.1 · 72,616–74,142 bp · +
psbT · MW420948.1 · 74,334–74,441 bp · +
psbH · MW420948.1 · 74,737–74,958 bp · +
petB · MW420948.1 · 75,083–76,454 bp · +
petD · MW420948.1 · 76,637–77,843 bp · +
ycf2 · MW420948.1 · 86,215–93,015 bp · +
ycf15 · MW420948.1 · 93,157–93,354 bp · +
trnV-GAC · MW420948.1 · 99,606–99,677 bp · +
rrn16 · MW420948.1 · 99,904–101,394 bp · +
trnI-GAU · MW420948.1 · 101,693–102,712 bp · +
trnA-UGC · MW420948.1 · 102,778–103,663 bp · +
rrn23 · MW420948.1 · 103,833–106,644 bp · +
rrn4.5 · MW420948.1 · 106,743–106,845 bp · +
rrn5 · MW420948.1 · 107,093–107,213 bp · +
trnR-ACG · MW420948.1 · 107,448–107,521 bp · +
trnN-GUU · MW420948.1 · 108,070–108,141 bp · +
rpl32 · MW420948.1 · 111,787–111,963 bp · +
trnL-UAG · MW420948.1 · 112,410–112,489 bp · +
ccsA · MW420948.1 · 112,591–113,565 bp · +
trnN-GUU · MW420948.1 · 127,684–127,755 bp · +
rps7 · MW420948.1 · 138,635–139,102 bp · +
ndhB · MW420948.1 · 139,377–141,588 bp · +
trnL-CAA · MW420948.1 · 142,131–142,211 bp · +
trnI-CAU · MW420948.1 · 149,699–149,772 bp · +
rpl23 · MW420948.1 · 149,932–150,213 bp · +
rpl2 · MW420948.1 · 150,232–151,713 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pinnatifida subsp. mucida
ANNOTATED PLASTOME
MW420948.1
151,813 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37953 75906 113860 151813 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 373 1431 1059 Locate
trnK-UUU gene − 1669 4242 2574 Locate
matK gene − 1955 3481 1527 Locate
rps16 gene − 5149 6309 1161 Locate
trnQ-UUC gene − 7054 7125 72 Locate
psbK gene + 7450 7635 186 Locate
psbI gene + 8025 8135 111 Locate
trnS-GCU gene − 8254 8341 88 Locate
trnG-CGA gene + 9057 9814 758 Locate
trnR-UCU gene + 9989 10060 72 Locate
atpA gene − 10157 11680 1524 Locate
atpF gene − 11762 12991 1230 Locate
atpH gene − 13352 13597 246 Locate
atpI gene − 14585 15328 744 Locate
rps2 gene − 15674 16384 711 Locate
rpoC2 gene − 16600 20805 4206 Locate
rpoC1 gene − 20960 23796 2837 Locate
rpoB gene − 23823 27035 3213 Locate
trnC-GCA gene + 28196 28266 71 Locate
petN gene + 28981 29070 90 Locate
psbM gene − 30074 30178 105 Locate
trnD-GUC gene − 30704 30777 74 Locate
trnY-GUA gene − 30891 30974 84 Locate
trnE-UUC gene − 31034 31106 73 Locate
trnT-GGU gene + 31682 31753 72 Locate
psbD gene + 33059 34120 1062 Locate
psbC gene + 34068 35489 1422 Locate
trnS-UCA gene − 35724 35816 93 Locate
psbZ gene + 36132 36320 189 Locate
trnG-GCC gene + 36601 36671 71 Locate
trnfM-CAU gene − 36820 36893 74 Locate
rps14 gene − 37048 37350 303 Locate
psaB gene − 37479 39683 2205 Locate
psaA gene − 39709 41961 2253 Locate
ycf3 gene − 42668 44589 1922 Locate
trnS-GGA gene + 45472 45558 87 Locate
rps4 gene − 45834 46439 606 Locate
trnT-UGU gene − 46781 46853 73 Locate
trnL-UAA gene + 47534 48094 561 Locate
trnF-GAA gene + 48395 48467 73 Locate
ndhJ gene − 49116 49592 477 Locate
ndhK gene − 49701 50378 678 Locate
ndhC gene − 50432 50794 363 Locate
trnV-UAC gene − 51780 52432 653 Locate
trnM-CAU gene + 52621 52693 73 Locate
atpE gene − 52887 53288 402 Locate
atpB gene − 53285 54781 1497 Locate
rbcL gene + 55553 56995 1443 Locate
accD gene + 57709 59187 1479 Locate
psaI gene + 59894 60004 111 Locate
ycf4 gene + 60438 60992 555 Locate
cemA gene + 61652 62341 690 Locate
petA gene + 62548 63510 963 Locate
pabJ gene − 64519 64641 123 Locate
psbL gene − 64775 64891 117 Locate
psbF gene − 64915 65034 120 Locate
psbE gene − 65049 65300 252 Locate
petL gene + 66178 66273 96 Locate
petG gene + 66449 66562 114 Locate
trnW-CCA gene − 66681 66754 74 Locate
trnP-UGG gene − 66924 66997 74 Locate
psbJ gene + 67269 67403 135 Locate
rpl33 gene + 67887 68087 201 Locate
rps18 gene + 68262 68567 306 Locate
rpl20 gene − 68801 69187 387 Locate
rps12 gene − 69970 70095 126 Locate
clpP gene − 70237 72164 1928 Locate
psbB gene + 72616 74142 1527 Locate
psbT gene + 74334 74441 108 Locate
psbN gene − 74502 74633 132 Locate
psbH gene + 74737 74958 222 Locate
petB gene + 75083 76454 1372 Locate
petD gene + 76637 77843 1207 Locate
rpoA gene − 78198 78998 801 Locate
rps11 gene − 79070 79486 417 Locate
rpl36 gene − 79588 79701 114 Locate
infA gene − 79796 80029 234 Locate
rps8 gene − 80153 80563 411 Locate
rpl14 gene − 80716 81084 369 Locate
rpl16 gene − 81211 82444 1234 Locate
rps3 gene − 82600 83262 663 Locate
rpl22 gene − 83264 83719 456 Locate
rps19 gene − 83779 84057 279 Locate
rpl2 gene − 84112 85593 1482 Locate
rpl23 gene − 85612 85893 282 Locate
trnI-CAU gene − 86053 86126 74 Locate
ycf2 gene + 86215 93015 6801 Locate
ycf15 gene + 93157 93354 198 Locate
trnL-CAA gene − 93614 93694 81 Locate
ndhB gene − 94237 96448 2212 Locate
rps7 gene − 96723 97190 468 Locate
rps12 gene − 97244 98034 791 Locate
trnV-GAC gene + 99606 99677 72 Locate
rrn16 gene + 99904 101394 1491 Locate
trnI-GAU gene + 101693 102712 1020 Locate
trnA-UGC gene + 102778 103663 886 Locate
rrn23 gene + 103833 106644 2812 Locate
rrn4.5 gene + 106743 106845 103 Locate
rrn5 gene + 107093 107213 121 Locate
trnR-ACG gene + 107448 107521 74 Locate
trnN-GUU gene + 108070 108141 72 Locate
ndhF gene − 109198 111459 2262 Locate
rpl32 gene + 111787 111963 177 Locate
trnL-UAG gene + 112410 112489 80 Locate
ccsA gene + 112591 113565 975 Locate
ndhD gene − 113822 115351 1530 Locate
psaC gene − 115452 115697 246 Locate
ndhE gene − 115953 116258 306 Locate
ndhG gene − 116475 117005 531 Locate
ndhI gene − 117372 117872 501 Locate
ndhA gene − 117958 120079 2122 Locate
ndhH gene − 120081 121262 1182 Locate
rps15 gene − 121359 121631 273 Locate
ycf1 gene − 121829 127354 5526 Locate
trnN-GUU gene + 127684 127755 72 Locate
trnR-ACG gene − 128304 128377 74 Locate
rrn5 gene − 128612 128732 121 Locate
rrn4.5 gene − 128980 129082 103 Locate
rrn23 gene − 129181 131992 2812 Locate
trnA-UGC gene − 132162 133047 886 Locate
trnI-GAU gene − 133113 134132 1020 Locate
rrn16 gene − 134431 135921 1491 Locate
trnV-GAC gene − 136148 136219 72 Locate
rps12 gene + 137791 138581 791 Locate
rps7 gene + 138635 139102 468 Locate
ndhB gene + 139377 141588 2212 Locate
trnL-CAA gene + 142131 142211 81 Locate
ycf15 gene − 142471 142668 198 Locate
ycf2 gene − 142810 149610 6801 Locate
trnI-CAU gene + 149699 149772 74 Locate
rpl23 gene + 149932 150213 282 Locate
rpl2 gene + 150232 151713 1482 Locate
Status Available
Accession MW420948.1
Length 151,813 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources