Scutellaria pinnatifida chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059326.1 · 4–77 bp · −
psbA · PQ059326.1 · 374–1,432 bp · −
trnK-UUU · PQ059326.1 · 1,674–4,255 bp · −
matK · PQ059326.1 · 1,964–3,490 bp · −
rps16 · PQ059326.1 · 5,158–6,320 bp · −
trnQ-UUG · PQ059326.1 · 7,056–7,127 bp · −
trnS-GCU · PQ059326.1 · 8,257–8,344 bp · −
atpA · PQ059326.1 · 10,146–11,669 bp · −
atpF · PQ059326.1 · 11,751–12,980 bp · −
atpH · PQ059326.1 · 13,336–13,581 bp · −
atpI · PQ059326.1 · 14,569–15,312 bp · −
rps2 · PQ059326.1 · 15,658–16,368 bp · −
rpoC2 · PQ059326.1 · 16,584–20,789 bp · −
rpoC1 · PQ059326.1 · 20,944–23,780 bp · −
rpoB · PQ059326.1 · 23,807–27,019 bp · −
psbM · PQ059326.1 · 30,062–30,166 bp · −
trnD-GUC · PQ059326.1 · 30,692–30,765 bp · −
trnY-GUA · PQ059326.1 · 30,879–30,962 bp · −
trnE-UUC · PQ059326.1 · 31,022–31,094 bp · −
trnS-UGA · PQ059326.1 · 35,712–35,803 bp · −
trnfM-CAU · PQ059326.1 · 36,801–36,874 bp · −
rps14 · PQ059326.1 · 37,029–37,331 bp · −
psaB · PQ059326.1 · 37,460–39,664 bp · −
psaA · PQ059326.1 · 39,690–41,942 bp · −
ycf3 · PQ059326.1 · 42,647–44,571 bp · −
rps4 · PQ059326.1 · 45,816–46,421 bp · −
trnT-UGU · PQ059326.1 · 46,763–46,835 bp · −
ndhJ · PQ059326.1 · 49,099–49,575 bp · −
ndhK · PQ059326.1 · 49,684–50,361 bp · −
ndhC · PQ059326.1 · 50,415–50,777 bp · −
trnV-UAC · PQ059326.1 · 51,763–52,415 bp · −
atpE · PQ059326.1 · 52,870–53,271 bp · −
atpB · PQ059326.1 · 53,268–54,764 bp · −
psbJ · PQ059326.1 · 64,519–64,641 bp · −
psbL · PQ059326.1 · 64,775–64,996 bp · −
psbF · PQ059326.1 · 64,915–65,034 bp · −
psbE · PQ059326.1 · 65,049–65,300 bp · −
trnW-CCA · PQ059326.1 · 66,681–66,754 bp · −
trnP-UGG · PQ059326.1 · 66,924–66,997 bp · −
rpl20 · PQ059326.1 · 68,802–69,188 bp · −
rps12 · PQ059326.1 · 69,983–70,096 bp · −
rps12 · PQ059326.1 · 97,243–98,033 bp · −
clpP · PQ059326.1 · 70,238–72,166 bp · −
psbN · PQ059326.1 · 74,504–74,635 bp · −
rpoA · PQ059326.1 · 78,197–78,997 bp · −
rps11 · PQ059326.1 · 79,069–79,485 bp · −
rpl36 · PQ059326.1 · 79,587–79,700 bp · −
infA · PQ059326.1 · 79,795–80,028 bp · −
rps8 · PQ059326.1 · 80,152–80,562 bp · −
rpl14 · PQ059326.1 · 80,715–81,083 bp · −
rpl16 · PQ059326.1 · 81,210–82,443 bp · −
rps3 · PQ059326.1 · 82,599–83,261 bp · −
rpl22 · PQ059326.1 · 83,263–83,718 bp · −
rps19 · PQ059326.1 · 83,778–84,056 bp · −
rpl2 · PQ059326.1 · 84,111–85,592 bp · −
rpl23 · PQ059326.1 · 85,611–85,892 bp · −
trnI-CAU · PQ059326.1 · 86,052–86,125 bp · −
trnL-CAA · PQ059326.1 · 93,613–93,693 bp · −
ndhB · PQ059326.1 · 94,236–96,447 bp · −
rps7 · PQ059326.1 · 96,722–97,189 bp · −
trnN-GUU · PQ059326.1 · 108,063–108,134 bp · −
ndhF · PQ059326.1 · 109,191–111,452 bp · −
ndhD · PQ059326.1 · 113,817–115,319 bp · −
psaC · PQ059326.1 · 115,447–115,692 bp · −
ndhE · PQ059326.1 · 115,948–116,253 bp · −
ndhG · PQ059326.1 · 116,470–117,000 bp · −
ndhI · PQ059326.1 · 117,367–117,867 bp · −
ndhA · PQ059326.1 · 117,953–120,074 bp · −
ndhH · PQ059326.1 · 120,076–121,257 bp · −
rps15 · PQ059326.1 · 121,354–121,626 bp · −
ycf1 · PQ059326.1 · 121,824–127,460 bp · −
trnR-ACG · PQ059326.1 · 128,299–128,372 bp · −
rrn5 · PQ059326.1 · 128,607–128,727 bp · −
rrn4.5 · PQ059326.1 · 128,975–129,077 bp · −
rrn23 · PQ059326.1 · 129,176–131,987 bp · −
trnA-UGC · PQ059326.1 · 132,150–133,036 bp · −
trnI-GAU · PQ059326.1 · 133,101–134,121 bp · −
ycf68 · PQ059326.1 · 133,673–133,966 bp · −
rrn16 · PQ059326.1 · 134,420–135,910 bp · −
trnV-GAC · PQ059326.1 · 136,137–136,208 bp · −
ycf15 · PQ059326.1 · 142,460–142,708 bp · −
ycf2 · PQ059326.1 · 142,799–149,599 bp · −
psbK · PQ059326.1 · 7,452–7,637 bp · +
psbI · PQ059326.1 · 8,027–8,137 bp · +
trnG-UCC · PQ059326.1 · 9,048–9,804 bp · +
trnR-UCU · PQ059326.1 · 9,978–10,049 bp · +
trnC-GCA · PQ059326.1 · 28,180–28,250 bp · +
petN · PQ059326.1 · 28,969–29,058 bp · +
trnT-GGU · PQ059326.1 · 31,670–31,741 bp · +
psbD · PQ059326.1 · 33,046–34,107 bp · +
psbC · PQ059326.1 · 34,055–35,476 bp · +
psbZ · PQ059326.1 · 36,119–36,307 bp · +
trnG-GCC · PQ059326.1 · 36,583–36,653 bp · +
trnS-GGA · PQ059326.1 · 45,454–45,540 bp · +
trnL-UAA · PQ059326.1 · 47,516–48,075 bp · +
trnF-GAA · PQ059326.1 · 48,378–48,450 bp · +
trnM-CAU · PQ059326.1 · 52,604–52,676 bp · +
rbcL · PQ059326.1 · 55,515–56,978 bp · +
accD · PQ059326.1 · 57,709–59,187 bp · +
psaI · PQ059326.1 · 59,894–60,004 bp · +
ycf4 · PQ059326.1 · 60,438–60,992 bp · +
cemA · PQ059326.1 · 61,741–62,340 bp · +
petA · PQ059326.1 · 62,547–63,509 bp · +
petL · PQ059326.1 · 66,178–66,273 bp · +
petG · PQ059326.1 · 66,449–66,562 bp · +
psaJ · PQ059326.1 · 67,269–67,403 bp · +
rpl33 · PQ059326.1 · 67,887–68,087 bp · +
rps18 · PQ059326.1 · 68,262–68,567 bp · +
rps12 · PQ059326.1 · 137,780–138,570 bp · +
psbB · PQ059326.1 · 72,618–74,144 bp · +
psbT · PQ059326.1 · 74,336–74,443 bp · +
psbH · PQ059326.1 · 74,739–74,960 bp · +
petB · PQ059326.1 · 75,085–76,453 bp · +
petD · PQ059326.1 · 76,636–77,842 bp · +
ycf2 · PQ059326.1 · 86,214–93,014 bp · +
ycf15 · PQ059326.1 · 93,105–93,353 bp · +
trnV-GAC · PQ059326.1 · 99,605–99,676 bp · +
rrn16 · PQ059326.1 · 99,903–101,393 bp · +
trnI-GAU · PQ059326.1 · 101,692–102,712 bp · +
trnA-UGC · PQ059326.1 · 102,777–103,663 bp · +
rrn23 · PQ059326.1 · 103,826–106,637 bp · +
rrn4.5 · PQ059326.1 · 106,736–106,838 bp · +
rrn5 · PQ059326.1 · 107,086–107,206 bp · +
trnR-ACG · PQ059326.1 · 107,441–107,514 bp · +
rpl32 · PQ059326.1 · 111,781–111,957 bp · +
trnL-UAG · PQ059326.1 · 112,405–112,484 bp · +
ccsA · PQ059326.1 · 112,586–113,560 bp · +
trnN-GUU · PQ059326.1 · 127,679–127,750 bp · +
rps7 · PQ059326.1 · 138,624–139,091 bp · +
ndhB · PQ059326.1 · 139,366–141,577 bp · +
trnL-CAA · PQ059326.1 · 142,120–142,200 bp · +
trnI-CAU · PQ059326.1 · 149,688–149,761 bp · +
rpl23 · PQ059326.1 · 149,921–150,202 bp · +
rpl2 · PQ059326.1 · 150,221–151,702 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria pinnatifida
ANNOTATED PLASTOME
PQ059326.1
151,802 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37950 75901 113852 151802 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5158 6320 1163 Locate
trnQ-UUG gene − 7056 7127 72 Locate
psbK gene + 7452 7637 186 Locate
psbI gene + 8027 8137 111 Locate
trnS-GCU gene − 8257 8344 88 Locate
trnG-UCC gene + 9048 9804 757 Locate
trnR-UCU gene + 9978 10049 72 Locate
atpA gene − 10146 11669 1524 Locate
atpF gene − 11751 12980 1230 Locate
atpH gene − 13336 13581 246 Locate
atpI gene − 14569 15312 744 Locate
rps2 gene − 15658 16368 711 Locate
rpoC2 gene − 16584 20789 4206 Locate
rpoC1 gene − 20944 23780 2837 Locate
rpoB gene − 23807 27019 3213 Locate
trnC-GCA gene + 28180 28250 71 Locate
petN gene + 28969 29058 90 Locate
psbM gene − 30062 30166 105 Locate
trnD-GUC gene − 30692 30765 74 Locate
trnY-GUA gene − 30879 30962 84 Locate
trnE-UUC gene − 31022 31094 73 Locate
trnT-GGU gene + 31670 31741 72 Locate
psbD gene + 33046 34107 1062 Locate
psbC gene + 34055 35476 1422 Locate
trnS-UGA gene − 35712 35803 92 Locate
psbZ gene + 36119 36307 189 Locate
trnG-GCC gene + 36583 36653 71 Locate
trnfM-CAU gene − 36801 36874 74 Locate
rps14 gene − 37029 37331 303 Locate
psaB gene − 37460 39664 2205 Locate
psaA gene − 39690 41942 2253 Locate
ycf3 gene − 42647 44571 1925 Locate
trnS-GGA gene + 45454 45540 87 Locate
rps4 gene − 45816 46421 606 Locate
trnT-UGU gene − 46763 46835 73 Locate
trnL-UAA gene + 47516 48075 560 Locate
trnF-GAA gene + 48378 48450 73 Locate
ndhJ gene − 49099 49575 477 Locate
ndhK gene − 49684 50361 678 Locate
ndhC gene − 50415 50777 363 Locate
trnV-UAC gene − 51763 52415 653 Locate
trnM-CAU gene + 52604 52676 73 Locate
atpE gene − 52870 53271 402 Locate
atpB gene − 53268 54764 1497 Locate
rbcL gene + 55515 56978 1464 Locate
accD gene + 57709 59187 1479 Locate
psaI gene + 59894 60004 111 Locate
ycf4 gene + 60438 60992 555 Locate
cemA gene + 61741 62340 600 Locate
petA gene + 62547 63509 963 Locate
psbJ gene − 64519 64641 123 Locate
psbL gene − 64775 64996 222 Locate
psbF gene − 64915 65034 120 Locate
psbE gene − 65049 65300 252 Locate
petL gene + 66178 66273 96 Locate
petG gene + 66449 66562 114 Locate
trnW-CCA gene − 66681 66754 74 Locate
trnP-UGG gene − 66924 66997 74 Locate
psaJ gene + 67269 67403 135 Locate
rpl33 gene + 67887 68087 201 Locate
rps18 gene + 68262 68567 306 Locate
rpl20 gene − 68802 69188 387 Locate
rps12 gene − 69983 70096 114 Locate
clpP gene − 70238 72166 1929 Locate
psbB gene + 72618 74144 1527 Locate
psbT gene + 74336 74443 108 Locate
psbN gene − 74504 74635 132 Locate
psbH gene + 74739 74960 222 Locate
petB gene + 75085 76453 1369 Locate
petD gene + 76636 77842 1207 Locate
rpoA gene − 78197 78997 801 Locate
rps11 gene − 79069 79485 417 Locate
rpl36 gene − 79587 79700 114 Locate
infA gene − 79795 80028 234 Locate
rps8 gene − 80152 80562 411 Locate
rpl14 gene − 80715 81083 369 Locate
rpl16 gene − 81210 82443 1234 Locate
rps3 gene − 82599 83261 663 Locate
rpl22 gene − 83263 83718 456 Locate
rps19 gene − 83778 84056 279 Locate
rpl2 gene − 84111 85592 1482 Locate
rpl23 gene − 85611 85892 282 Locate
trnI-CAU gene − 86052 86125 74 Locate
ycf2 gene + 86214 93014 6801 Locate
ycf15 gene + 93105 93353 249 Locate
trnL-CAA gene − 93613 93693 81 Locate
ndhB gene − 94236 96447 2212 Locate
rps7 gene − 96722 97189 468 Locate
rps12 gene − 97243 98033 791 Locate
trnV-GAC gene + 99605 99676 72 Locate
rrn16 gene + 99903 101393 1491 Locate
trnI-GAU gene + 101692 102712 1021 Locate
trnA-UGC gene + 102777 103663 887 Locate
rrn23 gene + 103826 106637 2812 Locate
rrn4.5 gene + 106736 106838 103 Locate
rrn5 gene + 107086 107206 121 Locate
trnR-ACG gene + 107441 107514 74 Locate
trnN-GUU gene − 108063 108134 72 Locate
ndhF gene − 109191 111452 2262 Locate
rpl32 gene + 111781 111957 177 Locate
trnL-UAG gene + 112405 112484 80 Locate
ccsA gene + 112586 113560 975 Locate
ndhD gene − 113817 115319 1503 Locate
psaC gene − 115447 115692 246 Locate
ndhE gene − 115948 116253 306 Locate
ndhG gene − 116470 117000 531 Locate
ndhI gene − 117367 117867 501 Locate
ndhA gene − 117953 120074 2122 Locate
ndhH gene − 120076 121257 1182 Locate
rps15 gene − 121354 121626 273 Locate
ycf1 gene − 121824 127460 5637 Locate
trnN-GUU gene + 127679 127750 72 Locate
trnR-ACG gene − 128299 128372 74 Locate
rrn5 gene − 128607 128727 121 Locate
rrn4.5 gene − 128975 129077 103 Locate
rrn23 gene − 129176 131987 2812 Locate
trnA-UGC gene − 132150 133036 887 Locate
trnI-GAU gene − 133101 134121 1021 Locate
ycf68 gene − 133673 133966 294 Locate
rrn16 gene − 134420 135910 1491 Locate
trnV-GAC gene − 136137 136208 72 Locate
rps12 gene + 137780 138570 791 Locate
rps7 gene + 138624 139091 468 Locate
ndhB gene + 139366 141577 2212 Locate
trnL-CAA gene + 142120 142200 81 Locate
ycf15 gene − 142460 142708 249 Locate
ycf2 gene − 142799 149599 6801 Locate
trnI-CAU gene + 149688 149761 74 Locate
rpl23 gene + 149921 150202 282 Locate
rpl2 gene + 150221 151702 1482 Locate
Status Available
Accession PQ059326.1
Length 151,802 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources