Scutellaria platensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420949.1 · 2–75 bp · −
psbA · MW420949.1 · 381–1,439 bp · −
trnK-UUU · MW420949.1 · 1,676–4,255 bp · −
matK · MW420949.1 · 1,967–3,502 bp · −
rps16 · MW420949.1 · 5,175–6,344 bp · −
trnQ-UUC · MW420949.1 · 7,461–7,532 bp · −
trnS-GCU · MW420949.1 · 8,669–8,756 bp · −
atpA · MW420949.1 · 10,557–12,080 bp · −
atpF · MW420949.1 · 12,163–13,392 bp · −
atpH · MW420949.1 · 13,753–13,998 bp · −
atpI · MW420949.1 · 14,953–15,696 bp · −
rps2 · MW420949.1 · 16,044–16,754 bp · −
rpoC2 · MW420949.1 · 16,951–21,177 bp · −
rpoC1 · MW420949.1 · 21,332–24,167 bp · −
rpoB · MW420949.1 · 24,194–27,406 bp · −
psbM · MW420949.1 · 30,471–30,575 bp · −
trnD-GUC · MW420949.1 · 31,103–31,176 bp · −
trnY-GUA · MW420949.1 · 31,290–31,373 bp · −
trnE-UUC · MW420949.1 · 31,433–31,505 bp · −
trnS-UCA · MW420949.1 · 36,154–36,246 bp · −
trnfM-CAU · MW420949.1 · 37,256–37,329 bp · −
rps14 · MW420949.1 · 37,479–37,781 bp · −
psaB · MW420949.1 · 37,909–40,113 bp · −
psaA · MW420949.1 · 40,139–42,391 bp · −
ycf3 · MW420949.1 · 43,082–45,011 bp · −
rps4 · MW420949.1 · 46,264–46,869 bp · −
trnT-UGU · MW420949.1 · 47,201–47,273 bp · −
ndhJ · MW420949.1 · 49,563–50,039 bp · −
ndhK · MW420949.1 · 50,147–50,824 bp · −
ndhC · MW420949.1 · 50,877–51,239 bp · −
trnV-UAC · MW420949.1 · 52,238–52,890 bp · −
atpE · MW420949.1 · 53,359–53,760 bp · −
atpB · MW420949.1 · 53,757–55,244 bp · −
pabJ · MW420949.1 · 64,976–65,098 bp · −
psbL · MW420949.1 · 65,232–65,348 bp · −
psbF · MW420949.1 · 65,372–65,491 bp · −
psbE · MW420949.1 · 65,506–65,757 bp · −
trnW-CCA · MW420949.1 · 67,170–67,243 bp · −
trnP-UGG · MW420949.1 · 67,413–67,486 bp · −
rpl20 · MW420949.1 · 69,272–69,658 bp · −
rps12 · MW420949.1 · 70,443–70,568 bp · −
rps12 · MW420949.1 · 97,790–98,580 bp · −
clpP · MW420949.1 · 70,712–72,651 bp · −
psbN · MW420949.1 · 75,024–75,155 bp · −
rpoA · MW420949.1 · 78,519–79,532 bp · −
rps11 · MW420949.1 · 79,604–80,020 bp · −
rpl36 · MW420949.1 · 80,122–80,235 bp · −
infA · MW420949.1 · 80,331–80,564 bp · −
rps8 · MW420949.1 · 80,683–81,093 bp · −
rpl14 · MW420949.1 · 81,259–81,627 bp · −
rpl16 · MW420949.1 · 81,753–82,985 bp · −
rps3 · MW420949.1 · 83,140–83,802 bp · −
rpl22 · MW420949.1 · 83,804–84,259 bp · −
rps19 · MW420949.1 · 84,319–84,597 bp · −
rpl2 · MW420949.1 · 84,652–86,134 bp · −
rpl23 · MW420949.1 · 86,153–86,434 bp · −
trnI-CAU · MW420949.1 · 86,594–86,667 bp · −
trnL-CAA · MW420949.1 · 94,160–94,240 bp · −
ndhB · MW420949.1 · 94,783–96,994 bp · −
rps7 · MW420949.1 · 97,269–97,736 bp · −
ndhF · MW420949.1 · 109,760–112,000 bp · −
ndhD · MW420949.1 · 114,513–116,042 bp · −
psaC · MW420949.1 · 116,135–116,380 bp · −
ndhE · MW420949.1 · 116,642–116,947 bp · −
ndhG · MW420949.1 · 117,178–117,708 bp · −
ndhI · MW420949.1 · 118,073–118,573 bp · −
ndhA · MW420949.1 · 118,655–120,755 bp · −
ndhH · MW420949.1 · 120,757–121,938 bp · −
rps15 · MW420949.1 · 122,041–122,313 bp · −
ycf1 · MW420949.1 · 122,586–128,027 bp · −
trnR-ACG · MW420949.1 · 128,976–129,049 bp · −
rrn5 · MW420949.1 · 129,284–129,404 bp · −
rrn4.5 · MW420949.1 · 129,652–129,754 bp · −
rrn23 · MW420949.1 · 129,853–132,665 bp · −
trnA-UGC · MW420949.1 · 132,835–133,720 bp · −
trnI-GAU · MW420949.1 · 133,786–134,805 bp · −
rrn16 · MW420949.1 · 135,104–136,594 bp · −
trnV-GAC · MW420949.1 · 136,822–136,893 bp · −
ycf15 · MW420949.1 · 143,136–143,333 bp · −
ycf2 · MW420949.1 · 143,475–150,284 bp · −
psbK · MW420949.1 · 7,857–8,042 bp · +
psbI · MW420949.1 · 8,439–8,549 bp · +
trnG-CGA · MW420949.1 · 9,452–10,214 bp · +
trnR-UCU · MW420949.1 · 10,389–10,460 bp · +
trnC-GCA · MW420949.1 · 28,580–28,650 bp · +
petN · MW420949.1 · 29,361–29,450 bp · +
trnT-GGU · MW420949.1 · 32,093–32,164 bp · +
psbD · MW420949.1 · 33,479–34,540 bp · +
psbC · MW420949.1 · 34,488–35,909 bp · +
psbZ · MW420949.1 · 36,567–36,755 bp · +
trnG-GCC · MW420949.1 · 37,032–37,102 bp · +
trnS-GGA · MW420949.1 · 45,898–45,984 bp · +
trnL-UAA · MW420949.1 · 47,959–48,520 bp · +
trnF-GAA · MW420949.1 · 48,832–48,904 bp · +
trnM-CAU · MW420949.1 · 53,071–53,143 bp · +
rbcL · MW420949.1 · 56,009–57,451 bp · +
accD · MW420949.1 · 58,169–59,635 bp · +
psaI · MW420949.1 · 60,352–60,462 bp · +
ycf4 · MW420949.1 · 60,896–61,450 bp · +
cemA · MW420949.1 · 62,132–62,791 bp · +
petA · MW420949.1 · 62,998–63,960 bp · +
petL · MW420949.1 · 66,667–66,762 bp · +
petG · MW420949.1 · 66,938–67,051 bp · +
psbJ · MW420949.1 · 67,760–67,894 bp · +
rpl33 · MW420949.1 · 68,358–68,558 bp · +
rps18 · MW420949.1 · 68,733–69,038 bp · +
rps12 · MW420949.1 · 138,460–139,250 bp · +
psbB · MW420949.1 · 73,130–74,656 bp · +
psbT · MW420949.1 · 74,848–74,949 bp · +
psbH · MW420949.1 · 75,259–75,480 bp · +
petB · MW420949.1 · 75,605–76,973 bp · +
petD · MW420949.1 · 77,158–78,349 bp · +
ycf2 · MW420949.1 · 86,756–93,565 bp · +
ycf15 · MW420949.1 · 93,707–93,904 bp · +
trnV-GAC · MW420949.1 · 100,147–100,218 bp · +
rrn16 · MW420949.1 · 100,446–101,936 bp · +
trnI-GAU · MW420949.1 · 102,235–103,254 bp · +
trnA-UGC · MW420949.1 · 103,320–104,205 bp · +
rrn23 · MW420949.1 · 104,375–107,187 bp · +
rrn4.5 · MW420949.1 · 107,286–107,388 bp · +
rrn5 · MW420949.1 · 107,636–107,756 bp · +
trnR-ACG · MW420949.1 · 107,991–108,064 bp · +
trnN-GUU · MW420949.1 · 108,612–108,683 bp · +
rpl32 · MW420949.1 · 112,524–112,700 bp · +
trnL-UAG · MW420949.1 · 113,128–113,207 bp · +
ccsA · MW420949.1 · 113,302–114,276 bp · +
trnN-GUU · MW420949.1 · 128,357–128,428 bp · +
rps7 · MW420949.1 · 139,304–139,771 bp · +
ndhB · MW420949.1 · 140,046–142,257 bp · +
trnL-CAA · MW420949.1 · 142,800–142,880 bp · +
trnI-CAU · MW420949.1 · 150,373–150,446 bp · +
rpl23 · MW420949.1 · 150,606–150,887 bp · +
rpl2 · MW420949.1 · 150,906–152,388 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria platensis
ANNOTATED PLASTOME
MW420949.1
152,484 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38121 76242 114363 152484 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1676 4255 2580 Locate
matK gene − 1967 3502 1536 Locate
rps16 gene − 5175 6344 1170 Locate
trnQ-UUC gene − 7461 7532 72 Locate
psbK gene + 7857 8042 186 Locate
psbI gene + 8439 8549 111 Locate
trnS-GCU gene − 8669 8756 88 Locate
trnG-CGA gene + 9452 10214 763 Locate
trnR-UCU gene + 10389 10460 72 Locate
atpA gene − 10557 12080 1524 Locate
atpF gene − 12163 13392 1230 Locate
atpH gene − 13753 13998 246 Locate
atpI gene − 14953 15696 744 Locate
rps2 gene − 16044 16754 711 Locate
rpoC2 gene − 16951 21177 4227 Locate
rpoC1 gene − 21332 24167 2836 Locate
rpoB gene − 24194 27406 3213 Locate
trnC-GCA gene + 28580 28650 71 Locate
petN gene + 29361 29450 90 Locate
psbM gene − 30471 30575 105 Locate
trnD-GUC gene − 31103 31176 74 Locate
trnY-GUA gene − 31290 31373 84 Locate
trnE-UUC gene − 31433 31505 73 Locate
trnT-GGU gene + 32093 32164 72 Locate
psbD gene + 33479 34540 1062 Locate
psbC gene + 34488 35909 1422 Locate
trnS-UCA gene − 36154 36246 93 Locate
psbZ gene + 36567 36755 189 Locate
trnG-GCC gene + 37032 37102 71 Locate
trnfM-CAU gene − 37256 37329 74 Locate
rps14 gene − 37479 37781 303 Locate
psaB gene − 37909 40113 2205 Locate
psaA gene − 40139 42391 2253 Locate
ycf3 gene − 43082 45011 1930 Locate
trnS-GGA gene + 45898 45984 87 Locate
rps4 gene − 46264 46869 606 Locate
trnT-UGU gene − 47201 47273 73 Locate
trnL-UAA gene + 47959 48520 562 Locate
trnF-GAA gene + 48832 48904 73 Locate
ndhJ gene − 49563 50039 477 Locate
ndhK gene − 50147 50824 678 Locate
ndhC gene − 50877 51239 363 Locate
trnV-UAC gene − 52238 52890 653 Locate
trnM-CAU gene + 53071 53143 73 Locate
atpE gene − 53359 53760 402 Locate
atpB gene − 53757 55244 1488 Locate
rbcL gene + 56009 57451 1443 Locate
accD gene + 58169 59635 1467 Locate
psaI gene + 60352 60462 111 Locate
ycf4 gene + 60896 61450 555 Locate
cemA gene + 62132 62791 660 Locate
petA gene + 62998 63960 963 Locate
pabJ gene − 64976 65098 123 Locate
psbL gene − 65232 65348 117 Locate
psbF gene − 65372 65491 120 Locate
psbE gene − 65506 65757 252 Locate
petL gene + 66667 66762 96 Locate
petG gene + 66938 67051 114 Locate
trnW-CCA gene − 67170 67243 74 Locate
trnP-UGG gene − 67413 67486 74 Locate
psbJ gene + 67760 67894 135 Locate
rpl33 gene + 68358 68558 201 Locate
rps18 gene + 68733 69038 306 Locate
rpl20 gene − 69272 69658 387 Locate
rps12 gene − 70443 70568 126 Locate
clpP gene − 70712 72651 1940 Locate
psbB gene + 73130 74656 1527 Locate
psbT gene + 74848 74949 102 Locate
psbN gene − 75024 75155 132 Locate
psbH gene + 75259 75480 222 Locate
petB gene + 75605 76973 1369 Locate
petD gene + 77158 78349 1192 Locate
rpoA gene − 78519 79532 1014 Locate
rps11 gene − 79604 80020 417 Locate
rpl36 gene − 80122 80235 114 Locate
infA gene − 80331 80564 234 Locate
rps8 gene − 80683 81093 411 Locate
rpl14 gene − 81259 81627 369 Locate
rpl16 gene − 81753 82985 1233 Locate
rps3 gene − 83140 83802 663 Locate
rpl22 gene − 83804 84259 456 Locate
rps19 gene − 84319 84597 279 Locate
rpl2 gene − 84652 86134 1483 Locate
rpl23 gene − 86153 86434 282 Locate
trnI-CAU gene − 86594 86667 74 Locate
ycf2 gene + 86756 93565 6810 Locate
ycf15 gene + 93707 93904 198 Locate
trnL-CAA gene − 94160 94240 81 Locate
ndhB gene − 94783 96994 2212 Locate
rps7 gene − 97269 97736 468 Locate
rps12 gene − 97790 98580 791 Locate
trnV-GAC gene + 100147 100218 72 Locate
rrn16 gene + 100446 101936 1491 Locate
trnI-GAU gene + 102235 103254 1020 Locate
trnA-UGC gene + 103320 104205 886 Locate
rrn23 gene + 104375 107187 2813 Locate
rrn4.5 gene + 107286 107388 103 Locate
rrn5 gene + 107636 107756 121 Locate
trnR-ACG gene + 107991 108064 74 Locate
trnN-GUU gene + 108612 108683 72 Locate
ndhF gene − 109760 112000 2241 Locate
rpl32 gene + 112524 112700 177 Locate
trnL-UAG gene + 113128 113207 80 Locate
ccsA gene + 113302 114276 975 Locate
ndhD gene − 114513 116042 1530 Locate
psaC gene − 116135 116380 246 Locate
ndhE gene − 116642 116947 306 Locate
ndhG gene − 117178 117708 531 Locate
ndhI gene − 118073 118573 501 Locate
ndhA gene − 118655 120755 2101 Locate
ndhH gene − 120757 121938 1182 Locate
rps15 gene − 122041 122313 273 Locate
ycf1 gene − 122586 128027 5442 Locate
trnN-GUU gene + 128357 128428 72 Locate
trnR-ACG gene − 128976 129049 74 Locate
rrn5 gene − 129284 129404 121 Locate
rrn4.5 gene − 129652 129754 103 Locate
rrn23 gene − 129853 132665 2813 Locate
trnA-UGC gene − 132835 133720 886 Locate
trnI-GAU gene − 133786 134805 1020 Locate
rrn16 gene − 135104 136594 1491 Locate
trnV-GAC gene − 136822 136893 72 Locate
rps12 gene + 138460 139250 791 Locate
rps7 gene + 139304 139771 468 Locate
ndhB gene + 140046 142257 2212 Locate
trnL-CAA gene + 142800 142880 81 Locate
ycf15 gene − 143136 143333 198 Locate
ycf2 gene − 143475 150284 6810 Locate
trnI-CAU gene + 150373 150446 74 Locate
rpl23 gene + 150606 150887 282 Locate
rpl2 gene + 150906 152388 1483 Locate
Status Available
Accession MW420949.1
Length 152,484 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources