Scutellaria platystegia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059235.1 · 4–77 bp · −
psbA · PQ059235.1 · 374–1,432 bp · −
trnK-UUU · PQ059235.1 · 1,674–4,255 bp · −
matK · PQ059235.1 · 1,964–3,490 bp · −
rps16 · PQ059235.1 · 5,157–6,319 bp · −
trnQ-UUG · PQ059235.1 · 7,063–7,134 bp · −
trnS-GCU · PQ059235.1 · 8,263–8,350 bp · −
atpA · PQ059235.1 · 10,152–11,675 bp · −
atpF · PQ059235.1 · 11,757–12,986 bp · −
atpH · PQ059235.1 · 13,347–13,592 bp · −
atpI · PQ059235.1 · 14,580–15,323 bp · −
rps2 · PQ059235.1 · 15,669–16,379 bp · −
rpoC2 · PQ059235.1 · 16,594–20,799 bp · −
rpoC1 · PQ059235.1 · 20,954–23,790 bp · −
rpoB · PQ059235.1 · 23,817–27,029 bp · −
psbM · PQ059235.1 · 30,068–30,172 bp · −
trnD-GUC · PQ059235.1 · 30,698–30,771 bp · −
trnY-GUA · PQ059235.1 · 30,885–30,968 bp · −
trnE-UUC · PQ059235.1 · 31,028–31,100 bp · −
trnS-UGA · PQ059235.1 · 35,719–35,810 bp · −
trnfM-CAU · PQ059235.1 · 36,809–36,882 bp · −
rps14 · PQ059235.1 · 37,037–37,339 bp · −
psaB · PQ059235.1 · 37,468–39,672 bp · −
psaA · PQ059235.1 · 39,698–41,950 bp · −
ycf3 · PQ059235.1 · 42,657–44,580 bp · −
rps4 · PQ059235.1 · 45,825–46,430 bp · −
trnT-UGU · PQ059235.1 · 46,776–46,848 bp · −
ndhJ · PQ059235.1 · 49,109–49,585 bp · −
ndhK · PQ059235.1 · 49,694–50,455 bp · −
ndhC · PQ059235.1 · 50,425–50,787 bp · −
trnV-UAC · PQ059235.1 · 51,773–52,425 bp · −
atpE · PQ059235.1 · 52,880–53,281 bp · −
atpB · PQ059235.1 · 53,278–54,774 bp · −
psbJ · PQ059235.1 · 64,510–64,632 bp · −
psbL · PQ059235.1 · 64,766–64,987 bp · −
psbF · PQ059235.1 · 64,906–65,025 bp · −
psbE · PQ059235.1 · 65,040–65,291 bp · −
trnW-CCA · PQ059235.1 · 66,672–66,745 bp · −
trnP-UGG · PQ059235.1 · 66,915–66,988 bp · −
rpl20 · PQ059235.1 · 68,792–69,178 bp · −
rps12 · PQ059235.1 · 69,973–70,086 bp · −
rps12 · PQ059235.1 · 97,236–98,026 bp · −
clpP · PQ059235.1 · 70,228–72,156 bp · −
psbN · PQ059235.1 · 74,495–74,626 bp · −
rpoA · PQ059235.1 · 78,191–78,991 bp · −
rps11 · PQ059235.1 · 79,063–79,479 bp · −
rpl36 · PQ059235.1 · 79,581–79,694 bp · −
infA · PQ059235.1 · 79,789–80,022 bp · −
rps8 · PQ059235.1 · 80,146–80,556 bp · −
rpl14 · PQ059235.1 · 80,708–81,076 bp · −
rpl16 · PQ059235.1 · 81,203–82,436 bp · −
rps3 · PQ059235.1 · 82,592–83,254 bp · −
rpl22 · PQ059235.1 · 83,256–83,711 bp · −
rps19 · PQ059235.1 · 83,771–84,049 bp · −
rpl2 · PQ059235.1 · 84,104–85,585 bp · −
rpl23 · PQ059235.1 · 85,604–85,885 bp · −
trnI-CAU · PQ059235.1 · 86,045–86,118 bp · −
trnL-CAA · PQ059235.1 · 93,606–93,686 bp · −
ndhB · PQ059235.1 · 94,229–96,440 bp · −
rps7 · PQ059235.1 · 96,715–97,182 bp · −
trnN-GUU · PQ059235.1 · 108,062–108,133 bp · −
ndhF · PQ059235.1 · 109,190–111,451 bp · −
ndhD · PQ059235.1 · 113,801–115,303 bp · −
psaC · PQ059235.1 · 115,431–115,676 bp · −
ndhE · PQ059235.1 · 115,932–116,237 bp · −
ndhG · PQ059235.1 · 116,454–116,984 bp · −
ndhI · PQ059235.1 · 117,351–117,851 bp · −
ndhA · PQ059235.1 · 117,937–120,058 bp · −
ndhH · PQ059235.1 · 120,060–121,271 bp · −
rps15 · PQ059235.1 · 121,338–121,610 bp · −
ycf1 · PQ059235.1 · 121,808–127,444 bp · −
trnR-ACG · PQ059235.1 · 128,283–128,356 bp · −
rrn5 · PQ059235.1 · 128,591–128,711 bp · −
rrn4.5 · PQ059235.1 · 128,959–129,061 bp · −
rrn23 · PQ059235.1 · 129,160–131,971 bp · −
trnA-UGC · PQ059235.1 · 132,141–133,026 bp · −
trnI-GAU · PQ059235.1 · 133,091–134,111 bp · −
ycf68 · PQ059235.1 · 133,663–133,956 bp · −
rrn16 · PQ059235.1 · 134,410–135,900 bp · −
trnV-GAC · PQ059235.1 · 136,127–136,198 bp · −
ycf15 · PQ059235.1 · 142,450–142,647 bp · −
ycf2 · PQ059235.1 · 142,789–149,589 bp · −
psbK · PQ059235.1 · 7,459–7,644 bp · +
psbI · PQ059235.1 · 8,034–8,144 bp · +
trnG-UCC · PQ059235.1 · 9,053–9,809 bp · +
trnR-UCU · PQ059235.1 · 9,984–10,055 bp · +
trnC-GCA · PQ059235.1 · 28,189–28,259 bp · +
petN · PQ059235.1 · 28,975–29,064 bp · +
trnT-GGU · PQ059235.1 · 31,676–31,747 bp · +
psbD · PQ059235.1 · 33,053–34,114 bp · +
psbC · PQ059235.1 · 34,062–35,483 bp · +
psbZ · PQ059235.1 · 36,126–36,314 bp · +
trnG-GCC · PQ059235.1 · 36,593–36,663 bp · +
trnS-GGA · PQ059235.1 · 45,463–45,549 bp · +
trnL-UAA · PQ059235.1 · 47,529–48,088 bp · +
trnF-GAA · PQ059235.1 · 48,388–48,460 bp · +
trnM-CAU · PQ059235.1 · 52,614–52,686 bp · +
rbcL · PQ059235.1 · 55,525–56,988 bp · +
accD · PQ059235.1 · 57,702–59,180 bp · +
psaI · PQ059235.1 · 59,886–59,996 bp · +
ycf4 · PQ059235.1 · 60,430–60,984 bp · +
cemA · PQ059235.1 · 61,733–62,332 bp · +
petA · PQ059235.1 · 62,539–63,501 bp · +
petL · PQ059235.1 · 66,169–66,264 bp · +
petG · PQ059235.1 · 66,440–66,553 bp · +
psaJ · PQ059235.1 · 67,260–67,394 bp · +
rpl33 · PQ059235.1 · 67,877–68,077 bp · +
rps18 · PQ059235.1 · 68,252–68,557 bp · +
rps12 · PQ059235.1 · 137,770–138,560 bp · +
psbB · PQ059235.1 · 72,608–74,134 bp · +
psbT · PQ059235.1 · 74,327–74,434 bp · +
psbH · PQ059235.1 · 74,730–74,951 bp · +
petB · PQ059235.1 · 75,076–76,447 bp · +
petD · PQ059235.1 · 76,630–77,836 bp · +
ycf2 · PQ059235.1 · 86,207–93,007 bp · +
ycf15 · PQ059235.1 · 93,149–93,346 bp · +
trnV-GAC · PQ059235.1 · 99,598–99,669 bp · +
rrn16 · PQ059235.1 · 99,896–101,386 bp · +
trnI-GAU · PQ059235.1 · 101,685–102,705 bp · +
trnA-UGC · PQ059235.1 · 102,770–103,655 bp · +
rrn23 · PQ059235.1 · 103,825–106,636 bp · +
rrn4.5 · PQ059235.1 · 106,735–106,837 bp · +
rrn5 · PQ059235.1 · 107,085–107,205 bp · +
trnR-ACG · PQ059235.1 · 107,440–107,513 bp · +
rpl32 · PQ059235.1 · 111,779–111,955 bp · +
trnL-UAG · PQ059235.1 · 112,402–112,481 bp · +
ccsA · PQ059235.1 · 112,570–113,544 bp · +
trnN-GUU · PQ059235.1 · 127,663–127,734 bp · +
rps7 · PQ059235.1 · 138,614–139,081 bp · +
ndhB · PQ059235.1 · 139,356–141,567 bp · +
trnL-CAA · PQ059235.1 · 142,110–142,190 bp · +
trnI-CAU · PQ059235.1 · 149,678–149,751 bp · +
rpl23 · PQ059235.1 · 149,911–150,192 bp · +
rpl2 · PQ059235.1 · 150,211–151,692 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria platystegia
ANNOTATED PLASTOME
PQ059235.1
151,792 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37948 75896 113844 151792 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6319 1163 Locate
trnQ-UUG gene − 7063 7134 72 Locate
psbK gene + 7459 7644 186 Locate
psbI gene + 8034 8144 111 Locate
trnS-GCU gene − 8263 8350 88 Locate
trnG-UCC gene + 9053 9809 757 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11757 12986 1230 Locate
atpH gene − 13347 13592 246 Locate
atpI gene − 14580 15323 744 Locate
rps2 gene − 15669 16379 711 Locate
rpoC2 gene − 16594 20799 4206 Locate
rpoC1 gene − 20954 23790 2837 Locate
rpoB gene − 23817 27029 3213 Locate
trnC-GCA gene + 28189 28259 71 Locate
petN gene + 28975 29064 90 Locate
psbM gene − 30068 30172 105 Locate
trnD-GUC gene − 30698 30771 74 Locate
trnY-GUA gene − 30885 30968 84 Locate
trnE-UUC gene − 31028 31100 73 Locate
trnT-GGU gene + 31676 31747 72 Locate
psbD gene + 33053 34114 1062 Locate
psbC gene + 34062 35483 1422 Locate
trnS-UGA gene − 35719 35810 92 Locate
psbZ gene + 36126 36314 189 Locate
trnG-GCC gene + 36593 36663 71 Locate
trnfM-CAU gene − 36809 36882 74 Locate
rps14 gene − 37037 37339 303 Locate
psaB gene − 37468 39672 2205 Locate
psaA gene − 39698 41950 2253 Locate
ycf3 gene − 42657 44580 1924 Locate
trnS-GGA gene + 45463 45549 87 Locate
rps4 gene − 45825 46430 606 Locate
trnT-UGU gene − 46776 46848 73 Locate
trnL-UAA gene + 47529 48088 560 Locate
trnF-GAA gene + 48388 48460 73 Locate
ndhJ gene − 49109 49585 477 Locate
ndhK gene − 49694 50455 762 Locate
ndhC gene − 50425 50787 363 Locate
trnV-UAC gene − 51773 52425 653 Locate
trnM-CAU gene + 52614 52686 73 Locate
atpE gene − 52880 53281 402 Locate
atpB gene − 53278 54774 1497 Locate
rbcL gene + 55525 56988 1464 Locate
accD gene + 57702 59180 1479 Locate
psaI gene + 59886 59996 111 Locate
ycf4 gene + 60430 60984 555 Locate
cemA gene + 61733 62332 600 Locate
petA gene + 62539 63501 963 Locate
psbJ gene − 64510 64632 123 Locate
psbL gene − 64766 64987 222 Locate
psbF gene − 64906 65025 120 Locate
psbE gene − 65040 65291 252 Locate
petL gene + 66169 66264 96 Locate
petG gene + 66440 66553 114 Locate
trnW-CCA gene − 66672 66745 74 Locate
trnP-UGG gene − 66915 66988 74 Locate
psaJ gene + 67260 67394 135 Locate
rpl33 gene + 67877 68077 201 Locate
rps18 gene + 68252 68557 306 Locate
rpl20 gene − 68792 69178 387 Locate
rps12 gene − 69973 70086 114 Locate
clpP gene − 70228 72156 1929 Locate
psbB gene + 72608 74134 1527 Locate
psbT gene + 74327 74434 108 Locate
psbN gene − 74495 74626 132 Locate
psbH gene + 74730 74951 222 Locate
petB gene + 75076 76447 1372 Locate
petD gene + 76630 77836 1207 Locate
rpoA gene − 78191 78991 801 Locate
rps11 gene − 79063 79479 417 Locate
rpl36 gene − 79581 79694 114 Locate
infA gene − 79789 80022 234 Locate
rps8 gene − 80146 80556 411 Locate
rpl14 gene − 80708 81076 369 Locate
rpl16 gene − 81203 82436 1234 Locate
rps3 gene − 82592 83254 663 Locate
rpl22 gene − 83256 83711 456 Locate
rps19 gene − 83771 84049 279 Locate
rpl2 gene − 84104 85585 1482 Locate
rpl23 gene − 85604 85885 282 Locate
trnI-CAU gene − 86045 86118 74 Locate
ycf2 gene + 86207 93007 6801 Locate
ycf15 gene + 93149 93346 198 Locate
trnL-CAA gene − 93606 93686 81 Locate
ndhB gene − 94229 96440 2212 Locate
rps7 gene − 96715 97182 468 Locate
rps12 gene − 97236 98026 791 Locate
trnV-GAC gene + 99598 99669 72 Locate
rrn16 gene + 99896 101386 1491 Locate
trnI-GAU gene + 101685 102705 1021 Locate
trnA-UGC gene + 102770 103655 886 Locate
rrn23 gene + 103825 106636 2812 Locate
rrn4.5 gene + 106735 106837 103 Locate
rrn5 gene + 107085 107205 121 Locate
trnR-ACG gene + 107440 107513 74 Locate
trnN-GUU gene − 108062 108133 72 Locate
ndhF gene − 109190 111451 2262 Locate
rpl32 gene + 111779 111955 177 Locate
trnL-UAG gene + 112402 112481 80 Locate
ccsA gene + 112570 113544 975 Locate
ndhD gene − 113801 115303 1503 Locate
psaC gene − 115431 115676 246 Locate
ndhE gene − 115932 116237 306 Locate
ndhG gene − 116454 116984 531 Locate
ndhI gene − 117351 117851 501 Locate
ndhA gene − 117937 120058 2122 Locate
ndhH gene − 120060 121271 1212 Locate
rps15 gene − 121338 121610 273 Locate
ycf1 gene − 121808 127444 5637 Locate
trnN-GUU gene + 127663 127734 72 Locate
trnR-ACG gene − 128283 128356 74 Locate
rrn5 gene − 128591 128711 121 Locate
rrn4.5 gene − 128959 129061 103 Locate
rrn23 gene − 129160 131971 2812 Locate
trnA-UGC gene − 132141 133026 886 Locate
trnI-GAU gene − 133091 134111 1021 Locate
ycf68 gene − 133663 133956 294 Locate
rrn16 gene − 134410 135900 1491 Locate
trnV-GAC gene − 136127 136198 72 Locate
rps12 gene + 137770 138560 791 Locate
rps7 gene + 138614 139081 468 Locate
ndhB gene + 139356 141567 2212 Locate
trnL-CAA gene + 142110 142190 81 Locate
ycf15 gene − 142450 142647 198 Locate
ycf2 gene − 142789 149589 6801 Locate
trnI-CAU gene + 149678 149751 74 Locate
rpl23 gene + 149911 150192 282 Locate
rpl2 gene + 150211 151692 1482 Locate
Status Available
Accession PQ059235.1
Length 151,792 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources